Wall clock time and date at job start Tue Mar 31 2020 11:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99450 * 2 1 4 4 N 1.46504 * 109.47477 * 124.99771 * 3 2 1 5 5 C 1.46504 * 119.99952 * 85.01786 * 4 3 2 6 6 C 1.50698 * 109.47015 * 95.46119 * 5 4 3 7 7 H 1.08002 * 120.00117 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99634 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99395 * 179.97438 * 8 6 5 10 10 Si 1.86791 * 120.00209 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47617 * 89.99875 * 10 8 6 12 12 H 1.48498 * 109.47192 * 210.00039 * 10 8 6 13 13 H 1.48498 * 109.47293 * 329.99572 * 10 8 6 14 14 C 1.34767 * 119.99753 * 264.74691 * 4 3 2 15 15 O 1.21566 * 120.00442 * 5.58156 * 14 4 3 16 16 C 1.47842 * 120.00029 * 185.58494 * 14 4 3 17 17 N 1.34574 * 126.01837 * 354.81325 * 16 14 4 18 18 C 1.30866 * 107.28777 * 179.87142 * 17 16 14 19 19 C 1.50699 * 126.20739 * 180.14435 * 18 17 16 20 20 N 1.34894 * 107.58644 * 0.39096 * 18 17 16 21 21 C 1.40100 * 125.76801 * 179.75211 * 20 18 17 22 22 N 1.33636 * 125.59742 * 179.97438 * 21 20 18 23 23 C 1.30804 * 109.79202 * 179.97438 * 22 21 20 24 24 N 1.34435 * 108.19883 * 0.02562 * 23 22 21 25 25 H 0.96999 * 126.77733 * 179.97438 * 24 23 22 26 26 N 1.31153 * 125.59822 * 359.66578 * 21 20 18 27 27 N 1.28851 * 108.46204 * 359.75459 * 20 18 17 28 28 H 1.07992 * 120.00132 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99239 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00460 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47308 * 4.99237 * 3 2 1 32 32 H 1.09006 * 109.47103 * 244.99640 * 3 2 1 33 33 H 1.09001 * 109.47177 * 215.46321 * 5 4 3 34 34 H 1.09001 * 109.46673 * 335.45827 * 5 4 3 35 35 H 0.97009 * 119.99968 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47108 * 270.29647 * 19 18 17 37 37 H 1.09007 * 109.46961 * 30.29041 * 19 18 17 38 38 H 1.08998 * 109.47425 * 150.28696 * 19 18 17 39 39 H 1.07995 * 125.90227 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3322 1.1315 5 6 4.3219 0.7276 1.0023 6 6 5.3235 1.7902 0.6303 7 1 5.0028 2.8136 0.5023 8 6 6.6494 1.4560 0.4532 9 7 7.5234 2.3833 0.1280 10 14 7.2040 -0.3140 0.6738 11 1 7.1079 -1.0284 -0.6245 12 1 8.6110 -0.3364 1.1481 13 1 6.3340 -0.9844 1.6732 14 6 2.6296 1.9180 2.2892 15 8 1.4960 2.3338 2.4300 16 6 3.6089 2.0552 3.3882 17 7 4.8582 1.5551 3.4020 18 6 5.4002 1.8939 4.5439 19 6 6.7955 1.5557 5.0022 20 7 4.4816 2.5961 5.2387 21 6 4.6615 3.1393 6.5175 22 7 3.7491 3.8350 7.2025 23 6 4.2424 4.1934 8.3597 24 7 5.5011 3.7283 8.4417 25 1 6.1143 3.8401 9.1850 26 7 5.7512 3.0438 7.2411 27 7 3.4107 2.6826 4.5274 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3584 2.1317 0.0894 32 1 2.6213 1.4027 -0.9314 33 1 4.6085 0.2743 1.9513 34 1 4.2987 -0.0377 0.2265 35 1 8.4563 2.1483 0.0038 36 1 6.7830 0.6030 5.5317 37 1 7.4542 1.4817 4.1368 38 1 7.1584 2.3376 5.6692 39 1 3.7276 4.7642 9.1183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327875028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:20 Heat of formation + Delta-G solvation = 188.134452 kcal Electronic energy + Delta-G solvation = -26607.665492 eV Core-core repulsion = 22784.115958 eV Total energy + Delta-G solvation = -3823.549534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.84566 -43.33577 -40.75683 -37.28231 -36.06184 -34.93894 -34.41810 -33.93475 -33.42711 -31.83670 -29.89251 -29.24596 -28.09057 -25.49828 -24.86191 -24.30475 -22.91945 -21.76582 -20.98108 -20.29952 -19.74942 -18.96512 -18.67064 -18.25992 -17.67283 -17.45435 -16.63618 -16.24395 -15.99499 -15.79016 -15.59892 -15.15479 -14.91541 -14.34518 -14.28338 -14.10513 -14.01514 -13.91868 -13.30621 -13.09212 -12.81109 -12.66503 -12.54078 -12.36975 -12.14965 -11.88051 -11.64288 -11.48350 -11.45280 -11.37603 -11.15711 -10.99896 -10.59421 -10.34903 -10.31746 -9.53299 -8.13787 -6.14802 -0.40889 0.34443 0.54652 0.95368 1.26005 1.45671 1.47821 1.61578 1.74175 1.78195 2.01174 2.27577 2.48709 2.86732 2.94878 3.22429 3.24416 3.60137 3.87924 4.01998 4.20410 4.39709 4.49643 4.55532 4.56626 4.67259 4.71010 4.73438 4.80110 4.92940 4.98280 5.08806 5.30310 5.51344 5.58666 5.68892 5.72275 5.85845 6.05211 6.18991 6.45119 6.59060 6.79902 6.89277 7.10195 7.46499 9.03717 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.005304 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.015575 B = 5278.133789 C = 7187.152974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C 0.140 3.860 4 N -0.568 5.568 5 C 0.209 3.791 6 C -0.500 4.500 7 H 0.016 0.984 8 C 0.031 3.969 9 N -0.951 5.951 10 Si 0.932 3.068 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.241 1.241 14 C 0.609 3.391 15 O -0.563 6.563 16 C 0.152 3.848 17 N -0.440 5.440 18 C 0.230 3.770 19 C -0.066 4.066 20 N -0.236 5.236 21 C 0.429 3.571 22 N -0.575 5.575 23 C 0.315 3.685 24 N -0.444 5.444 25 H 0.474 0.526 26 N -0.298 5.298 27 N -0.260 5.260 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 -2.324 18.752 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.018 3.982 4 N -0.297 5.297 5 C 0.088 3.912 6 C -0.539 4.539 7 H 0.034 0.966 8 C -0.167 4.167 9 N -0.592 5.592 10 Si 0.756 3.244 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.164 1.164 14 C 0.393 3.607 15 O -0.441 6.441 16 C -0.129 4.129 17 N -0.164 5.164 18 C -0.045 4.045 19 C -0.125 4.125 20 N -0.030 5.030 21 C 0.060 3.940 22 N -0.306 5.306 23 C 0.018 3.982 24 N -0.167 5.167 25 H 0.327 0.673 26 N -0.135 5.135 27 N -0.097 5.097 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.313 0.687 Dipole moment (debyes) X Y Z Total from point charges -2.967 -2.270 18.253 18.631 hybrid contribution 1.001 0.133 0.272 1.046 sum -1.966 -2.136 18.525 18.751 Atomic orbital electron populations 1.24025 0.95191 1.02894 0.97851 1.23221 0.96765 0.97962 1.02232 1.20727 0.91902 0.97050 0.88494 1.47777 1.17108 1.53972 1.10840 1.20098 0.78150 0.93590 0.99405 1.21126 0.93051 0.93910 1.45797 0.96578 1.25470 0.95957 1.01368 0.93864 1.70070 1.03253 1.35585 1.50339 0.85938 0.78265 0.80501 0.79723 1.19534 1.20638 1.16381 1.16394 0.84372 0.78511 0.81415 1.90695 1.19875 1.51812 1.81708 1.23850 0.93520 1.01133 0.94390 1.71956 1.05474 1.23059 1.15932 1.26239 0.97276 0.93391 0.87592 1.20618 0.83692 1.04984 1.03196 1.43355 1.09829 1.38795 1.10992 1.19561 0.90806 0.98099 0.85493 1.70277 1.33039 1.19783 1.07490 1.27302 0.83074 0.93555 0.94281 1.47962 1.14528 1.39887 1.14322 0.67342 1.78142 1.18103 1.21146 0.96088 1.74463 1.09128 1.21434 1.04666 0.88511 0.85970 0.86416 0.90418 0.88832 0.91290 0.93816 0.92735 0.86443 0.88910 0.87374 0.68654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 14.32 67.78 0.97 -3.42 16 2 C -0.18 -5.81 9.84 25.65 0.25 -5.56 16 3 C 0.14 5.37 5.84 85.63 0.50 5.87 16 4 N -0.57 -26.21 2.46 -833.89 -2.05 -28.25 16 5 C 0.21 10.04 3.84 85.63 0.33 10.36 16 6 C -0.50 -28.44 8.56 25.60 0.22 -28.23 16 7 H 0.02 1.06 8.06 -2.91 -0.02 1.03 16 8 C 0.03 1.73 5.47 84.66 0.46 2.19 16 9 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 10 Si 0.93 42.15 27.47 68.60 1.88 44.04 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 14 C 0.61 30.35 7.63 86.79 0.66 31.01 16 15 O -0.56 -29.13 16.64 -3.92 -0.07 -29.19 16 16 C 0.15 7.50 7.57 137.10 1.04 8.54 16 17 N -0.44 -20.72 6.99 -180.71 -1.26 -21.98 16 18 C 0.23 9.21 7.94 138.07 1.10 10.30 16 19 C -0.07 -1.94 9.84 71.24 0.70 -1.24 16 20 N -0.24 -9.54 3.52 -188.45 -0.66 -10.20 16 21 C 0.43 13.66 8.74 260.69 2.28 15.94 16 22 N -0.57 -15.73 11.20 -200.94 -2.25 -17.98 16 23 C 0.32 3.54 13.12 180.37 2.37 5.91 16 24 N -0.44 -4.58 7.44 -60.51 -0.45 -5.03 16 25 H 0.47 0.00 8.96 -213.10 -1.91 -1.91 16 26 N -0.30 -6.88 10.41 -58.74 -0.61 -7.49 16 27 N -0.26 -12.29 12.03 -52.42 -0.63 -12.92 16 28 H 0.10 2.64 7.84 -2.91 -0.02 2.62 16 29 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 31 H 0.08 3.03 7.00 -2.39 -0.02 3.02 16 32 H 0.09 3.48 8.11 -2.38 -0.02 3.46 16 33 H 0.07 3.37 4.66 -2.39 -0.01 3.36 16 34 H 0.04 1.94 7.46 -2.39 -0.02 1.93 16 35 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 36 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 38 H 0.11 2.77 6.33 -2.39 -0.02 2.76 16 39 H 0.30 -0.96 8.06 -2.91 -0.02 -0.98 16 Total: -1.00 -90.38 342.75 4.22 -86.16 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -0.85 Total: 9.13 kcal Atomic # 6 Polarization: 40.81 SS G_CDS: 10.87 Total: 51.68 kcal Atomic # 7 Polarization: -154.20 SS G_CDS: -7.62 Total: -161.81 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.07 Total: -29.19 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 1.88 Total: 44.04 kcal Total: -90.38 4.22 -86.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327875028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.291 kcal (2) G-P(sol) polarization free energy of solvation -90.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds