Wall clock time and date at job start Tue Mar 31 2020 10:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38168 * 120.80184 * 2 1 4 4 C 1.39095 * 119.22649 * 180.23404 * 3 2 1 5 5 N 1.39318 * 119.57280 * 179.74727 * 4 3 2 6 6 C 1.34769 * 120.00255 * 174.91903 * 5 4 3 7 7 O 1.21589 * 120.00088 * 5.09254 * 6 5 4 8 8 N 1.34777 * 120.00344 * 185.08754 * 6 5 4 9 9 C 1.46498 * 120.00085 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47494 * 34.99945 * 9 8 6 11 11 C 1.52997 * 109.47116 * 274.99983 * 9 8 6 12 12 C 1.50703 * 109.46850 * 155.00314 * 9 8 6 13 13 H 1.07998 * 120.00388 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99546 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00348 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99475 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.46979 * 60.00355 * 16 14 12 18 18 H 1.48504 * 109.46971 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47337 * 300.00146 * 16 14 12 20 20 N 1.32422 * 120.85972 * 359.47397 * 4 3 2 21 21 C 1.31773 * 121.75443 * 0.54067 * 20 4 3 22 22 C 1.39193 * 120.68178 * 359.72704 * 21 20 4 23 23 C 1.48436 * 120.45923 * 179.97438 * 22 21 20 24 24 N 1.34051 * 126.67825 * 179.71033 * 23 22 21 25 25 N 1.28990 * 107.26610 * 179.86652 * 24 23 22 26 26 N 1.28724 * 108.94771 * 0.39785 * 25 24 23 27 27 H 0.97006 * 125.34109 * 179.77930 * 26 25 24 28 28 N 1.28867 * 109.32301 * 359.74541 * 26 25 24 29 29 H 1.08995 * 109.47249 * 89.99793 * 1 2 3 30 30 H 1.09006 * 109.46780 * 209.99962 * 1 2 3 31 31 H 1.08996 * 109.47095 * 329.99309 * 1 2 3 32 32 H 1.08001 * 120.38738 * 359.95549 * 3 2 1 33 33 H 0.96998 * 119.99614 * 354.92553 * 5 4 3 34 34 H 0.96998 * 119.99572 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47257 * 60.00552 * 11 9 8 36 36 H 1.09003 * 109.47259 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.47761 * 300.00231 * 11 9 8 38 38 H 0.97006 * 120.00170 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.65226 * 179.74981 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2145 1.1868 0.0000 4 6 3.6049 1.1485 -0.0050 5 7 4.3255 2.3409 -0.0103 6 6 5.6694 2.3165 0.0882 7 8 6.2598 1.2536 0.0885 8 7 6.3589 3.4704 0.1863 9 6 7.8198 3.4439 0.2929 10 1 8.2128 2.6205 -0.3034 11 6 8.2210 3.2504 1.7566 12 6 8.3841 4.7458 -0.2147 13 1 7.7209 5.5161 -0.5797 14 6 9.7471 4.9540 -0.2121 15 7 10.5547 4.0162 0.2328 16 14 10.4466 6.5675 -0.8419 17 1 9.9108 7.6897 -0.0303 18 1 11.9275 6.5408 -0.7338 19 1 10.0579 6.7546 -2.2628 20 7 4.2527 -0.0064 0.0008 21 6 3.6146 -1.1594 0.0008 22 6 2.2233 -1.2012 0.0004 23 6 1.5097 -2.5028 -0.0002 24 7 0.1820 -2.6880 0.0048 25 7 -0.0270 -3.9608 -0.0007 26 7 1.1067 -4.5706 -0.0003 27 1 1.2261 -5.5333 -0.0008 28 7 2.0583 -3.7016 -0.0001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6940 2.1331 -0.0007 33 1 3.8599 3.1885 -0.0849 34 1 5.8879 4.3183 0.1864 35 1 7.8128 2.3087 2.1237 36 1 9.3079 3.2302 1.8358 37 1 7.8281 4.0737 2.3530 38 1 11.5136 4.1626 0.2343 39 1 4.1771 -2.0813 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592023903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:26 Heat of formation + Delta-G solvation = 149.236497 kcal Electronic energy + Delta-G solvation = -25172.611531 eV Core-core repulsion = 21347.375256 eV Total energy + Delta-G solvation = -3825.236276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.64289 -40.71922 -39.01150 -35.70636 -34.72709 -34.29459 -33.70935 -33.24637 -32.32853 -30.06585 -28.50879 -28.00451 -25.26190 -25.10307 -24.31374 -22.99885 -22.29046 -20.84854 -19.84629 -19.29237 -18.34371 -17.45725 -17.34239 -16.59900 -16.19040 -15.65166 -15.15508 -15.02492 -14.58503 -14.23009 -14.04768 -13.90058 -13.31826 -13.20125 -12.91453 -12.72639 -12.39398 -12.36354 -12.08461 -11.81632 -11.61109 -11.44340 -11.09133 -10.97354 -10.95842 -10.74292 -10.35375 -10.22449 -10.16510 -9.83913 -9.50106 -9.04259 -8.85524 -8.54392 -8.18614 -7.81717 -6.11595 -4.20976 0.54778 0.98130 1.23396 2.03440 2.20234 2.87442 3.25992 3.31505 3.32707 3.52190 3.64729 3.99511 4.12742 4.29372 4.41598 4.61023 4.75016 4.96917 5.07943 5.17401 5.21042 5.26791 5.40816 5.56255 5.60426 5.75883 5.93140 6.15037 6.27631 6.31015 6.72526 6.83778 6.99598 7.03961 7.19313 7.47805 7.61105 7.75473 7.93177 7.95145 8.15728 8.19200 8.73323 8.86822 9.27742 9.47716 10.94371 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.035067 B = 0.002342 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.281067 B =11955.085409 C =12497.040670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.033 3.967 3 C -0.227 4.227 4 C 0.417 3.583 5 N -0.672 5.672 6 C 0.679 3.321 7 O -0.532 6.532 8 N -0.720 5.720 9 C 0.282 3.718 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.882 5.882 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.276 1.276 20 N -0.473 5.473 21 C 0.190 3.810 22 C -0.135 4.135 23 C 0.243 3.757 24 N -0.274 5.274 25 N -0.056 5.056 26 N -0.228 5.228 27 H 0.475 0.525 28 N -0.298 5.298 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.411 0.589 34 H 0.385 0.615 35 H 0.016 0.984 36 H 0.090 0.910 37 H 0.025 0.975 38 H 0.265 0.735 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.554 -10.876 0.087 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.023 3.977 3 C -0.251 4.251 4 C 0.183 3.817 5 N -0.319 5.319 6 C 0.378 3.622 7 O -0.403 6.403 8 N -0.373 5.373 9 C 0.180 3.820 10 H 0.068 0.932 11 C -0.207 4.207 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 N -0.187 5.187 21 C 0.027 3.973 22 C -0.143 4.143 23 C -0.037 4.037 24 N -0.147 5.147 25 N -0.051 5.051 26 N -0.073 5.073 27 H 0.329 0.671 28 N -0.150 5.150 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.247 0.753 34 H 0.217 0.783 35 H 0.035 0.965 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.216 -12.147 0.147 23.585 hybrid contribution -0.407 1.392 -0.364 1.495 sum -20.623 -10.755 -0.217 23.260 Atomic orbital electron populations 1.21171 0.89176 1.04596 1.03593 1.19991 0.96920 0.90501 0.90292 1.21214 0.92145 0.99272 1.12516 1.18456 0.87372 0.86444 0.89435 1.43162 1.07288 1.06750 1.74676 1.16303 0.80171 0.86202 0.79476 1.91017 1.66598 1.28721 1.53945 1.45913 1.10170 1.05072 1.76123 1.18677 0.71499 0.98005 0.93825 0.93213 1.22103 1.04223 0.96716 0.97636 1.21164 0.92126 1.00631 1.43368 0.92130 1.24881 0.96772 0.97066 0.94985 1.69894 1.03805 1.32935 1.45338 0.86492 0.77909 0.83236 0.79335 1.20185 1.21135 1.20201 1.67962 1.38146 0.96377 1.16223 1.22841 0.89270 0.96189 0.89025 1.18051 0.93672 0.87088 1.15515 1.23409 0.87718 0.92263 1.00289 1.76075 1.14503 1.05195 1.18933 1.78886 1.10416 1.01102 1.14653 1.47686 1.01223 1.12296 1.46134 0.67139 1.74983 1.18193 0.99048 1.22754 0.90192 0.88100 0.91168 0.84063 0.75331 0.78323 0.96526 0.89105 0.95551 0.92479 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.28 36.00 0.33 -0.77 16 2 C 0.03 0.36 5.94 -104.04 -0.62 -0.26 16 3 C -0.23 -2.55 9.62 -39.29 -0.38 -2.93 16 4 C 0.42 6.30 7.42 -154.71 -1.15 5.15 16 5 N -0.67 -10.13 5.39 -15.80 -0.09 -10.22 16 6 C 0.68 13.87 8.49 -86.92 -0.74 13.14 16 7 O -0.53 -13.23 14.26 5.29 0.08 -13.15 16 8 N -0.72 -14.80 5.07 -59.82 -0.30 -15.10 16 9 C 0.28 7.15 2.56 -69.08 -0.18 6.98 16 10 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 11 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 12 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.88 -24.82 11.32 55.43 0.63 -24.19 16 16 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 N -0.47 -8.30 7.86 -12.11 -0.10 -8.40 16 21 C 0.19 2.72 10.86 -17.22 -0.19 2.53 16 22 C -0.14 -1.68 5.89 -104.73 -0.62 -2.30 16 23 C 0.24 2.81 7.82 -156.29 -1.22 1.59 16 24 N -0.27 -3.03 9.23 32.15 0.30 -2.73 16 25 N -0.06 -0.52 13.47 60.35 0.81 0.29 16 26 N -0.23 -1.64 7.90 60.35 0.48 -1.16 16 27 H 0.47 1.11 8.96 -340.36 -3.05 -1.94 16 28 N -0.30 -3.05 12.10 32.17 0.39 -2.66 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.96 5.29 -51.93 -0.27 0.68 16 31 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.41 4.36 8.71 -40.82 -0.36 4.00 16 34 H 0.38 6.59 8.56 -40.82 -0.35 6.24 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.17 2.13 7.89 -52.49 -0.41 1.71 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -35.04 338.31 -9.34 -44.37 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.81 Total: 5.24 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -4.80 Total: 7.14 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 2.12 Total: -64.17 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.08 Total: -13.15 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.04 -9.34 -44.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592023903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.609 kcal (2) G-P(sol) polarization free energy of solvation -35.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds