Wall clock time and date at job start Tue Mar 31 2020 10:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38168 * 120.80184 * 2 1 4 4 C 1.39095 * 119.22649 * 180.23404 * 3 2 1 5 5 N 1.39318 * 119.57280 * 179.74727 * 4 3 2 6 6 C 1.34769 * 120.00255 * 174.91903 * 5 4 3 7 7 O 1.21589 * 120.00088 * 5.09254 * 6 5 4 8 8 N 1.34777 * 120.00344 * 185.08754 * 6 5 4 9 9 C 1.46498 * 120.00085 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47494 * 34.99945 * 9 8 6 11 11 C 1.52997 * 109.47116 * 274.99983 * 9 8 6 12 12 C 1.50703 * 109.46850 * 155.00314 * 9 8 6 13 13 H 1.07998 * 120.00388 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99546 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00348 * 0.02562 * 14 12 9 16 16 Si 1.86806 * 119.99475 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.46979 * 60.00355 * 16 14 12 18 18 H 1.48504 * 109.46971 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47337 * 300.00146 * 16 14 12 20 20 N 1.32422 * 120.85972 * 359.47397 * 4 3 2 21 21 C 1.31773 * 121.75443 * 0.54067 * 20 4 3 22 22 C 1.39193 * 120.68178 * 359.72704 * 21 20 4 23 23 C 1.48436 * 120.45923 * 179.97438 * 22 21 20 24 24 N 1.34051 * 126.67825 * 179.71033 * 23 22 21 25 25 N 1.28990 * 107.26610 * 179.86652 * 24 23 22 26 26 N 1.28724 * 108.94771 * 0.39785 * 25 24 23 27 27 H 0.97006 * 125.34109 * 179.77930 * 26 25 24 28 28 N 1.28867 * 109.32301 * 359.74541 * 26 25 24 29 29 H 1.08995 * 109.47249 * 89.99793 * 1 2 3 30 30 H 1.09006 * 109.46780 * 209.99962 * 1 2 3 31 31 H 1.08996 * 109.47095 * 329.99309 * 1 2 3 32 32 H 1.08001 * 120.38738 * 359.95549 * 3 2 1 33 33 H 0.96998 * 119.99614 * 354.92553 * 5 4 3 34 34 H 0.96998 * 119.99572 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47257 * 60.00552 * 11 9 8 36 36 H 1.09003 * 109.47259 * 179.97438 * 11 9 8 37 37 H 1.08994 * 109.47761 * 300.00231 * 11 9 8 38 38 H 0.97006 * 120.00170 * 179.97438 * 15 14 12 39 39 H 1.08001 * 119.65226 * 179.74981 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2145 1.1868 0.0000 4 6 3.6049 1.1485 -0.0050 5 7 4.3255 2.3409 -0.0103 6 6 5.6694 2.3165 0.0882 7 8 6.2598 1.2536 0.0885 8 7 6.3589 3.4704 0.1863 9 6 7.8198 3.4439 0.2929 10 1 8.2128 2.6205 -0.3034 11 6 8.2210 3.2504 1.7566 12 6 8.3841 4.7458 -0.2147 13 1 7.7209 5.5161 -0.5797 14 6 9.7471 4.9540 -0.2121 15 7 10.5547 4.0162 0.2328 16 14 10.4466 6.5675 -0.8419 17 1 9.9108 7.6897 -0.0303 18 1 11.9275 6.5408 -0.7338 19 1 10.0579 6.7546 -2.2628 20 7 4.2527 -0.0064 0.0008 21 6 3.6146 -1.1594 0.0008 22 6 2.2233 -1.2012 0.0004 23 6 1.5097 -2.5028 -0.0002 24 7 0.1820 -2.6880 0.0048 25 7 -0.0270 -3.9608 -0.0007 26 7 1.1067 -4.5706 -0.0003 27 1 1.2261 -5.5333 -0.0008 28 7 2.0583 -3.7016 -0.0001 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6940 2.1331 -0.0007 33 1 3.8599 3.1885 -0.0849 34 1 5.8879 4.3183 0.1864 35 1 7.8128 2.3087 2.1237 36 1 9.3079 3.2302 1.8358 37 1 7.8281 4.0737 2.3530 38 1 11.5136 4.1626 0.2343 39 1 4.1771 -2.0813 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592023903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:25 Heat of formation + Delta-G solvation = 123.138720 kcal Electronic energy + Delta-G solvation = -25173.743216 eV Core-core repulsion = 21347.375256 eV Total energy + Delta-G solvation = -3826.367960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.42738 -41.89834 -40.43672 -37.13506 -36.16122 -35.45307 -34.71668 -34.24373 -34.06166 -31.40990 -30.09536 -28.87307 -27.31189 -26.02451 -25.19795 -24.22254 -23.38333 -22.31041 -21.39476 -20.21015 -19.80136 -18.76703 -18.11809 -17.87119 -17.44223 -16.95232 -16.87468 -16.50501 -15.89898 -15.38202 -15.22396 -15.10802 -14.91551 -14.34543 -14.06132 -13.87972 -13.65567 -13.56865 -13.25791 -12.98108 -12.86750 -12.81860 -12.71274 -12.48112 -12.29956 -12.22782 -12.12809 -11.75172 -11.40365 -11.34399 -11.08589 -10.57763 -10.40704 -10.13598 -9.78911 -9.12883 -8.14648 -6.32107 -0.41351 0.17768 0.29693 1.26334 1.44693 1.46950 1.49840 1.56195 1.61413 2.25626 2.43685 2.67225 2.91041 3.13866 3.15905 3.22322 3.60545 3.73507 3.94506 4.18950 4.22220 4.45269 4.59028 4.74647 4.78371 4.83194 4.94604 4.95883 5.03788 5.12634 5.36090 5.40508 5.51815 5.61012 5.64632 5.67881 5.76810 5.85690 6.10084 6.13647 6.75485 6.93315 7.15734 7.34356 7.39633 7.76597 8.91724 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.035067 B = 0.002342 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.281067 B =11955.085409 C =12497.040670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.031 3.969 3 C -0.199 4.199 4 C 0.385 3.615 5 N -0.654 5.654 6 C 0.681 3.319 7 O -0.584 6.584 8 N -0.714 5.714 9 C 0.290 3.710 10 H -0.003 1.003 11 C -0.133 4.133 12 C -0.545 4.545 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.271 1.271 20 N -0.525 5.525 21 C 0.171 3.829 22 C -0.125 4.125 23 C 0.227 3.773 24 N -0.281 5.281 25 N -0.056 5.056 26 N -0.200 5.200 27 H 0.494 0.506 28 N -0.305 5.305 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.433 0.567 34 H 0.404 0.596 35 H 0.008 0.992 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.464 -9.532 -0.188 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.021 3.979 3 C -0.223 4.223 4 C 0.152 3.848 5 N -0.304 5.304 6 C 0.381 3.619 7 O -0.459 6.459 8 N -0.368 5.368 9 C 0.186 3.814 10 H 0.015 0.985 11 C -0.192 4.192 12 C -0.583 4.583 13 H 0.095 0.905 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.214 1.214 19 H -0.196 1.196 20 N -0.239 5.239 21 C 0.010 3.990 22 C -0.133 4.133 23 C -0.053 4.053 24 N -0.153 5.153 25 N -0.051 5.051 26 N -0.051 5.051 27 H 0.352 0.648 28 N -0.157 5.157 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.201 0.799 33 H 0.274 0.726 34 H 0.239 0.761 35 H 0.027 0.973 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -23.234 -10.808 -0.131 25.625 hybrid contribution 0.359 0.749 -0.281 0.877 sum -22.876 -10.058 -0.412 24.993 Atomic orbital electron populations 1.21204 0.86809 1.05488 1.04438 1.20381 0.98406 0.89798 0.89297 1.21523 0.90191 1.01119 1.09458 1.18746 0.88749 0.85621 0.91645 1.42664 1.05171 1.08203 1.74389 1.16407 0.81730 0.85095 0.78701 1.90984 1.68414 1.30469 1.56029 1.45464 1.08577 1.06301 1.76470 1.18225 0.74103 0.96132 0.92901 0.98471 1.21915 1.02601 0.96847 0.97877 1.21505 0.92689 1.00932 1.43198 0.90531 1.25823 0.97235 1.00581 0.95090 1.70059 1.04001 1.35094 1.46501 0.85360 0.76777 0.79023 0.78923 1.18703 1.21398 1.19602 1.67749 1.40553 0.97992 1.17652 1.22792 0.90308 0.95443 0.90491 1.18157 0.93020 0.88386 1.13746 1.23310 0.88091 0.92268 1.01603 1.76081 1.14064 1.05869 1.19303 1.78839 1.10789 1.00779 1.14698 1.47736 1.00202 1.13079 1.44071 0.64751 1.74956 1.18997 0.99229 1.22550 0.89152 0.88887 0.88603 0.79868 0.72650 0.76058 0.97273 0.91462 0.93978 0.92570 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.28 71.23 0.66 -1.03 16 2 C 0.03 0.61 5.94 -19.49 -0.12 0.50 16 3 C -0.20 -3.94 9.62 22.46 0.22 -3.72 16 4 C 0.38 11.40 7.42 132.94 0.99 12.38 16 5 N -0.65 -19.23 5.39 -322.18 -1.74 -20.97 16 6 C 0.68 28.38 8.49 179.06 1.52 29.90 16 7 O -0.58 -30.57 14.26 -4.00 -0.06 -30.63 16 8 N -0.71 -29.50 5.07 -461.42 -2.34 -31.85 16 9 C 0.29 15.17 2.56 44.25 0.11 15.28 16 10 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 11 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 12 C -0.54 -28.59 8.73 25.60 0.22 -28.36 16 13 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 14 C 0.01 0.68 5.30 84.66 0.45 1.13 16 15 N -0.92 -52.98 11.32 21.45 0.24 -52.73 16 16 Si 0.97 41.71 29.54 68.60 2.03 43.74 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 N -0.52 -19.06 7.86 -192.24 -1.51 -20.57 16 21 C 0.17 5.07 10.86 84.93 0.92 5.99 16 22 C -0.13 -3.03 5.89 -19.94 -0.12 -3.15 16 23 C 0.23 5.02 7.82 137.36 1.07 6.09 16 24 N -0.28 -5.71 9.23 -52.19 -0.48 -6.19 16 25 N -0.06 -0.95 13.47 37.02 0.50 -0.45 16 26 N -0.20 -2.55 7.90 37.02 0.29 -2.25 16 27 H 0.49 1.36 8.96 -347.53 -3.12 -1.75 16 28 N -0.30 -5.94 12.10 -52.13 -0.63 -6.57 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.51 5.29 -2.38 -0.01 1.50 16 31 H 0.10 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.43 8.21 8.71 -92.71 -0.81 7.41 16 34 H 0.40 13.35 8.56 -92.71 -0.79 12.55 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 39 H 0.16 4.54 7.89 -2.91 -0.02 4.52 16 Total: -1.00 -79.62 338.31 -0.66 -80.28 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -3.56 Total: 19.39 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 6.60 Total: 28.80 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -5.67 Total: -141.58 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.06 Total: -30.63 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -79.62 -0.66 -80.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592023903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.419 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds