Wall clock time and date at job start Tue Mar 31 2020 11:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 115.54820 * 2 1 4 4 C 1.52992 * 117.50056 * 214.29223 * 2 1 3 5 5 H 1.09005 * 117.50253 * 145.02059 * 4 2 1 6 6 C 1.50699 * 117.50139 * 0.02562 * 4 2 1 7 7 O 1.21293 * 120.00132 * 290.88669 * 6 4 2 8 8 N 1.34784 * 120.00365 * 110.88300 * 6 4 2 9 9 C 1.37091 * 119.99574 * 5.41143 * 8 6 4 10 10 H 1.08000 * 120.00406 * 322.34972 * 9 8 6 11 11 C 1.38958 * 119.99835 * 142.35420 * 9 8 6 12 12 N 1.31413 * 119.99979 * 162.85936 * 11 9 8 13 13 Si 1.86798 * 119.99814 * 342.85938 * 11 9 8 14 14 H 1.48501 * 109.47088 * 90.58940 * 13 11 9 15 15 H 1.48496 * 109.47255 * 210.59121 * 13 11 9 16 16 H 1.48498 * 109.47185 * 330.59037 * 13 11 9 17 17 C 1.46500 * 120.00065 * 185.41227 * 8 6 4 18 18 C 1.50699 * 109.47081 * 89.99975 * 17 8 6 19 19 O 1.20829 * 119.99999 * 359.97438 * 18 17 8 20 20 O 1.34226 * 120.00060 * 180.02562 * 18 17 8 21 21 C 1.52993 * 60.00180 * 252.51233 * 4 2 1 22 22 H 1.08993 * 117.51928 * 107.48494 * 21 4 2 23 23 C 1.50707 * 117.49791 * 252.51472 * 21 4 2 24 24 C 1.38234 * 120.00174 * 180.54841 * 23 21 4 25 25 C 1.38230 * 120.00118 * 179.97438 * 24 23 21 26 26 C 1.38239 * 119.99976 * 0.06832 * 25 24 23 27 27 C 1.38233 * 119.99717 * 359.91206 * 26 25 24 28 28 C 1.38230 * 120.00425 * 0.04462 * 27 26 25 29 29 H 1.08987 * 109.47031 * 280.57904 * 1 2 3 30 30 H 1.09001 * 109.46972 * 40.58597 * 1 2 3 31 31 H 1.09000 * 109.46468 * 160.58092 * 1 2 3 32 32 H 1.08994 * 109.47171 * 211.18851 * 3 2 1 33 33 H 1.08998 * 109.47142 * 331.18746 * 3 2 1 34 34 H 1.09004 * 109.46905 * 91.18577 * 3 2 1 35 35 H 0.96993 * 119.99650 * 179.97438 * 12 11 9 36 36 H 1.08995 * 109.46856 * 210.00114 * 17 8 6 37 37 H 1.08996 * 109.47072 * 330.00132 * 17 8 6 38 38 H 0.96701 * 117.00054 * 180.02562 * 20 18 17 39 39 H 1.08002 * 119.99364 * 359.70098 * 24 23 21 40 40 H 1.08001 * 119.99861 * 179.97438 * 25 24 23 41 41 H 1.08006 * 119.99730 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.99295 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.00347 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 1 3.1717 -0.8755 -1.2680 6 6 1.3722 -2.1407 -1.4606 7 8 0.7172 -2.9266 -0.8091 8 7 1.3269 -2.1793 -2.8071 9 6 2.1494 -1.3671 -3.5441 10 1 2.3581 -0.3621 -3.2082 11 6 2.7147 -1.8369 -4.7234 12 7 3.2149 -0.9903 -5.5952 13 14 2.7634 -3.6719 -5.0694 14 1 1.5365 -4.0696 -5.8054 15 1 3.9586 -3.9890 -5.8918 16 1 2.8340 -4.4159 -3.7862 17 6 0.3987 -3.0891 -3.4831 18 6 -0.9158 -2.3881 -3.7103 19 8 -1.0624 -1.2458 -3.3447 20 8 -1.9241 -3.0329 -4.3180 21 6 2.2365 -1.1207 0.7653 22 1 1.6113 -1.8578 1.2691 23 6 3.5293 -0.7805 1.4611 24 6 3.5906 -0.7758 2.8421 25 6 4.7766 -0.4643 3.4802 26 6 5.9009 -0.1561 2.7374 27 6 5.8397 -0.1612 1.3565 28 6 4.6540 -0.4736 0.7183 29 1 -0.3633 0.1886 1.0101 30 1 -0.3633 0.7805 -0.6686 31 1 -0.3632 -0.9692 -0.3417 32 1 3.1397 1.3291 -0.5322 33 1 1.5342 2.0965 -0.4953 34 1 2.3658 1.6990 1.0275 35 1 3.6097 -1.3183 -6.4181 36 1 0.8198 -3.3914 -4.4418 37 1 0.2377 -3.9708 -2.8627 38 1 -2.7479 -2.5419 -4.4419 39 1 2.7107 -1.0113 3.4224 40 1 4.8243 -0.4603 4.5592 41 1 6.8274 0.0877 3.2361 42 1 6.7183 0.0793 0.7762 43 1 4.6063 -0.4779 -0.3606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593987271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:24 Heat of formation + Delta-G solvation = -61.019371 kcal Electronic energy + Delta-G solvation = -27354.704730 eV Core-core repulsion = 23559.305917 eV Total energy + Delta-G solvation = -3795.398813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31050 -39.62218 -38.53937 -36.82825 -35.54864 -34.85670 -32.07454 -31.09775 -30.74138 -29.18461 -27.96147 -27.01664 -25.14940 -23.84608 -22.33649 -21.86580 -20.61040 -19.11434 -18.57815 -17.67720 -17.15185 -16.96977 -16.16406 -15.80867 -15.35812 -15.05366 -14.84832 -14.66973 -14.33285 -14.11264 -13.72493 -13.30367 -13.20277 -12.94300 -12.74017 -12.60392 -12.44269 -12.21011 -12.06175 -11.91696 -11.77421 -11.51664 -11.15756 -11.04624 -10.97459 -10.80281 -10.57821 -10.51430 -10.15705 -9.95562 -9.83597 -9.49150 -9.26124 -8.79065 -8.75121 -8.26085 -8.05146 -6.56762 -4.21115 1.49835 1.56835 2.80656 2.88875 3.05907 3.15473 3.19194 3.56392 3.90217 3.96913 4.15804 4.46779 4.81889 4.97591 5.03643 5.13615 5.24263 5.26212 5.31080 5.45787 5.50873 5.59231 5.70482 5.76476 5.78894 5.85447 5.99784 6.06816 6.10907 6.16812 6.24887 6.31322 6.33891 6.40302 6.53921 6.56682 6.65859 6.68552 6.82723 6.91899 6.97238 7.10368 7.17342 7.91943 8.14834 8.46433 8.79073 9.15599 9.45388 10.53654 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.004763 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.715620 B = 5877.535024 C = 6804.033220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.112 4.112 4 C -0.138 4.138 5 H 0.132 0.868 6 C 0.529 3.471 7 O -0.589 6.589 8 N -0.447 5.447 9 C -0.336 4.336 10 H 0.111 0.889 11 C 0.063 3.937 12 N -0.856 5.856 13 Si 0.865 3.135 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.256 1.256 17 C 0.101 3.899 18 C 0.464 3.536 19 O -0.495 6.495 20 O -0.527 6.527 21 C -0.099 4.099 22 H 0.121 0.879 23 C -0.035 4.035 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.117 4.117 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.277 0.723 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.400 0.600 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 0.739 9.872 9.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.169 4.169 4 C -0.159 4.159 5 H 0.149 0.851 6 C 0.320 3.680 7 O -0.474 6.474 8 N -0.167 5.167 9 C -0.463 4.463 10 H 0.128 0.872 11 C -0.144 4.144 12 N -0.491 5.491 13 Si 0.693 3.307 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.180 1.180 17 C -0.024 4.024 18 C 0.303 3.697 19 O -0.380 6.380 20 O -0.338 6.338 21 C -0.118 4.118 22 H 0.139 0.861 23 C -0.035 4.035 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.151 4.151 27 C -0.135 4.135 28 C -0.133 4.133 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.257 0.743 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.468 0.510 10.144 10.167 hybrid contribution -0.406 -0.531 -0.770 1.020 sum 0.062 -0.021 9.373 9.374 Atomic orbital electron populations 1.21404 0.91668 1.03563 1.00907 1.21530 0.94961 0.90575 1.01204 1.21358 1.00414 0.93799 1.01329 1.22426 1.02074 0.99212 0.92174 0.85067 1.19363 0.82517 0.84329 0.81796 1.90541 1.48234 1.42953 1.65662 1.43281 1.31725 1.37470 1.04232 1.19134 1.24065 0.97205 1.05914 0.87164 1.25357 0.95550 0.98032 0.95475 1.69702 1.36740 1.34584 1.08036 0.87168 0.77713 0.86151 0.79712 1.19638 1.20787 1.18012 1.21385 0.85413 0.94686 1.00868 1.24428 0.85814 0.85883 0.73535 1.90669 1.81828 1.18476 1.47016 1.84571 1.25319 1.49940 1.74009 1.21295 0.95899 1.01856 0.92716 0.86147 1.19169 0.93621 0.97521 0.93149 1.20928 0.97880 1.00762 0.93815 1.21048 0.93128 1.00422 0.99452 1.21073 0.98284 1.01515 0.94203 1.21126 0.97803 1.00042 0.94572 1.21256 0.92371 0.99011 1.00683 0.92807 0.92061 0.91140 0.91971 0.92097 0.92480 0.91261 0.87692 0.86829 0.74263 0.86263 0.86487 0.86601 0.86221 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.57 37.16 0.36 -1.74 16 2 C -0.08 -1.42 2.70 -154.51 -0.42 -1.84 16 3 C -0.11 -1.70 8.70 37.16 0.32 -1.38 16 4 C -0.14 -2.73 4.07 -91.78 -0.37 -3.11 16 5 H 0.13 2.62 5.10 -51.93 -0.26 2.35 16 6 C 0.53 12.13 6.12 -10.98 -0.07 12.07 16 7 O -0.59 -14.17 14.78 5.55 0.08 -14.08 16 8 N -0.45 -10.61 1.69 -116.10 -0.20 -10.81 16 9 C -0.34 -8.55 8.90 -14.93 -0.13 -8.69 16 10 H 0.11 2.97 7.26 -52.49 -0.38 2.59 16 11 C 0.06 1.61 5.39 -17.46 -0.09 1.52 16 12 N -0.86 -22.91 13.96 55.50 0.77 -22.14 16 13 Si 0.86 19.20 24.87 -169.99 -4.23 14.97 16 14 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 17 C 0.10 2.22 4.80 -5.19 -0.02 2.20 16 18 C 0.46 9.70 8.40 36.01 0.30 10.01 16 19 O -0.49 -11.63 17.19 -18.75 -0.32 -11.95 16 20 O -0.53 -8.65 13.42 -39.25 -0.53 -9.17 16 21 C -0.10 -1.70 5.28 -91.77 -0.48 -2.18 16 22 H 0.12 2.17 7.67 -51.93 -0.40 1.77 16 23 C -0.03 -0.52 4.75 -104.62 -0.50 -1.02 16 24 C -0.12 -1.54 9.74 -39.59 -0.39 -1.93 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 27 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 28 C -0.12 -1.71 8.19 -39.58 -0.32 -2.03 16 29 H 0.05 0.82 8.14 -51.94 -0.42 0.39 16 30 H 0.06 1.08 7.99 -51.93 -0.42 0.67 16 31 H 0.07 1.45 5.77 -51.93 -0.30 1.15 16 32 H 0.06 0.95 7.00 -51.93 -0.36 0.59 16 33 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 34 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 35 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.11 2.29 2.73 -51.93 -0.14 2.15 16 37 H 0.11 2.32 7.35 -51.93 -0.38 1.94 16 38 H 0.40 4.56 9.10 45.56 0.41 4.97 16 39 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.13 1.99 5.81 -52.49 -0.30 1.68 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -30.43 353.81 -6.74 -37.17 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -4.64 Total: 14.51 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.01 Total: -3.82 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.58 Total: -32.95 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.77 Total: -35.21 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.23 Total: 14.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.43 -6.74 -37.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593987271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.850 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds