Wall clock time and date at job start Tue Mar 31 2020 11:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 115.54820 * 2 1 4 4 C 1.52992 * 117.50056 * 214.29223 * 2 1 3 5 5 H 1.09005 * 117.50253 * 145.02059 * 4 2 1 6 6 C 1.50699 * 117.50139 * 0.02562 * 4 2 1 7 7 O 1.21293 * 120.00132 * 290.88669 * 6 4 2 8 8 N 1.34784 * 120.00365 * 110.88300 * 6 4 2 9 9 C 1.37091 * 119.99574 * 5.41143 * 8 6 4 10 10 H 1.08000 * 120.00406 * 322.34972 * 9 8 6 11 11 C 1.38958 * 119.99835 * 142.35420 * 9 8 6 12 12 N 1.31413 * 119.99979 * 162.85936 * 11 9 8 13 13 Si 1.86798 * 119.99814 * 342.85938 * 11 9 8 14 14 H 1.48501 * 109.47088 * 90.58940 * 13 11 9 15 15 H 1.48496 * 109.47255 * 210.59121 * 13 11 9 16 16 H 1.48498 * 109.47185 * 330.59037 * 13 11 9 17 17 C 1.46500 * 120.00065 * 185.41227 * 8 6 4 18 18 C 1.50699 * 109.47081 * 89.99975 * 17 8 6 19 19 O 1.20829 * 119.99999 * 359.97438 * 18 17 8 20 20 O 1.34226 * 120.00060 * 180.02562 * 18 17 8 21 21 C 1.52993 * 60.00180 * 252.51233 * 4 2 1 22 22 H 1.08993 * 117.51928 * 107.48494 * 21 4 2 23 23 C 1.50707 * 117.49791 * 252.51472 * 21 4 2 24 24 C 1.38234 * 120.00174 * 180.54841 * 23 21 4 25 25 C 1.38230 * 120.00118 * 179.97438 * 24 23 21 26 26 C 1.38239 * 119.99976 * 0.06832 * 25 24 23 27 27 C 1.38233 * 119.99717 * 359.91206 * 26 25 24 28 28 C 1.38230 * 120.00425 * 0.04462 * 27 26 25 29 29 H 1.08987 * 109.47031 * 280.57904 * 1 2 3 30 30 H 1.09001 * 109.46972 * 40.58597 * 1 2 3 31 31 H 1.09000 * 109.46468 * 160.58092 * 1 2 3 32 32 H 1.08994 * 109.47171 * 211.18851 * 3 2 1 33 33 H 1.08998 * 109.47142 * 331.18746 * 3 2 1 34 34 H 1.09004 * 109.46905 * 91.18577 * 3 2 1 35 35 H 0.96993 * 119.99650 * 179.97438 * 12 11 9 36 36 H 1.08995 * 109.46856 * 210.00114 * 17 8 6 37 37 H 1.08996 * 109.47072 * 330.00132 * 17 8 6 38 38 H 0.96701 * 117.00054 * 180.02562 * 20 18 17 39 39 H 1.08002 * 119.99364 * 359.70098 * 24 23 21 40 40 H 1.08001 * 119.99861 * 179.97438 * 25 24 23 41 41 H 1.08006 * 119.99730 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.99295 * 180.02562 * 27 26 25 43 43 H 1.07999 * 120.00347 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 1 3.1717 -0.8755 -1.2680 6 6 1.3722 -2.1407 -1.4606 7 8 0.7172 -2.9266 -0.8091 8 7 1.3269 -2.1793 -2.8071 9 6 2.1494 -1.3671 -3.5441 10 1 2.3581 -0.3621 -3.2082 11 6 2.7147 -1.8369 -4.7234 12 7 3.2149 -0.9903 -5.5952 13 14 2.7634 -3.6719 -5.0694 14 1 1.5365 -4.0696 -5.8054 15 1 3.9586 -3.9890 -5.8918 16 1 2.8340 -4.4159 -3.7862 17 6 0.3987 -3.0891 -3.4831 18 6 -0.9158 -2.3881 -3.7103 19 8 -1.0624 -1.2458 -3.3447 20 8 -1.9241 -3.0329 -4.3180 21 6 2.2365 -1.1207 0.7653 22 1 1.6113 -1.8578 1.2691 23 6 3.5293 -0.7805 1.4611 24 6 3.5906 -0.7758 2.8421 25 6 4.7766 -0.4643 3.4802 26 6 5.9009 -0.1561 2.7374 27 6 5.8397 -0.1612 1.3565 28 6 4.6540 -0.4736 0.7183 29 1 -0.3633 0.1886 1.0101 30 1 -0.3633 0.7805 -0.6686 31 1 -0.3632 -0.9692 -0.3417 32 1 3.1397 1.3291 -0.5322 33 1 1.5342 2.0965 -0.4953 34 1 2.3658 1.6990 1.0275 35 1 3.6097 -1.3183 -6.4181 36 1 0.8198 -3.3914 -4.4418 37 1 0.2377 -3.9708 -2.8627 38 1 -2.7479 -2.5419 -4.4419 39 1 2.7107 -1.0113 3.4224 40 1 4.8243 -0.4603 4.5592 41 1 6.8274 0.0877 3.2361 42 1 6.7183 0.0793 0.7762 43 1 4.6063 -0.4779 -0.3606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593987271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:23 Heat of formation + Delta-G solvation = -78.412932 kcal Electronic energy + Delta-G solvation = -27355.458971 eV Core-core repulsion = 23559.305917 eV Total energy + Delta-G solvation = -3796.153055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88665 -41.09791 -39.93297 -38.23291 -37.14917 -36.67239 -34.02885 -32.21629 -31.74802 -30.78361 -29.44166 -28.36831 -27.03752 -25.25764 -23.49851 -23.16863 -22.08931 -20.71846 -20.08055 -19.29476 -18.78445 -18.56412 -17.61500 -17.34645 -17.02218 -16.62323 -16.24391 -16.00102 -15.83147 -15.46856 -15.06527 -14.84209 -14.62667 -14.38963 -14.19219 -14.14532 -13.83170 -13.56698 -13.49545 -13.29011 -13.25101 -12.96670 -12.81375 -12.62172 -12.37766 -12.32798 -11.94532 -11.87475 -11.79282 -11.70692 -11.22441 -11.16750 -10.82322 -10.53544 -9.94945 -9.75014 -9.38965 -8.53402 -6.21359 0.46021 0.56875 1.10975 1.13903 1.28692 1.39650 1.49326 1.96003 2.11741 2.50279 2.68196 2.93651 3.19272 3.59198 3.73845 3.81257 3.87594 4.05277 4.06040 4.12001 4.21059 4.27796 4.34528 4.35516 4.48722 4.66568 4.70307 4.72005 4.78067 4.94349 4.99658 5.00914 5.11025 5.19271 5.20915 5.23541 5.25990 5.41465 5.54937 5.65519 5.69133 5.81605 6.00250 6.13577 6.18422 6.85467 6.96845 7.24285 7.58979 8.60594 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.004763 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.715620 B = 5877.535024 C = 6804.033220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.166 4.166 5 H 0.121 0.879 6 C 0.525 3.475 7 O -0.605 6.605 8 N -0.458 5.458 9 C -0.334 4.334 10 H 0.081 0.919 11 C 0.024 3.976 12 N -0.895 5.895 13 Si 0.916 3.084 14 H -0.246 1.246 15 H -0.277 1.277 16 H -0.257 1.257 17 C 0.091 3.909 18 C 0.470 3.530 19 O -0.528 6.528 20 O -0.508 6.508 21 C -0.076 4.076 22 H 0.110 0.890 23 C -0.055 4.055 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.132 4.132 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.282 0.718 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.425 0.575 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.135 0.865 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 0.234 11.620 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.162 4.162 4 C -0.186 4.186 5 H 0.139 0.861 6 C 0.317 3.683 7 O -0.491 6.491 8 N -0.178 5.178 9 C -0.462 4.462 10 H 0.098 0.902 11 C -0.180 4.180 12 N -0.531 5.531 13 Si 0.741 3.259 14 H -0.172 1.172 15 H -0.203 1.203 16 H -0.182 1.182 17 C -0.034 4.034 18 C 0.311 3.689 19 O -0.417 6.417 20 O -0.322 6.322 21 C -0.094 4.094 22 H 0.128 0.872 23 C -0.055 4.055 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.150 4.150 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.287 0.713 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.734 -0.007 11.875 11.897 hybrid contribution -0.540 -0.362 -1.252 1.411 sum 0.194 -0.369 10.622 10.631 Atomic orbital electron populations 1.21349 0.91913 1.01505 1.02286 1.21673 0.94808 0.91319 0.99933 1.21316 0.99875 0.92477 1.02494 1.22378 1.01788 1.00533 0.93941 0.86130 1.19876 0.82338 0.84440 0.81665 1.90503 1.49016 1.43713 1.65841 1.43318 1.32308 1.37669 1.04527 1.18883 1.24901 0.96325 1.06076 0.90156 1.25919 0.95114 1.01865 0.95080 1.69782 1.38113 1.36459 1.08783 0.86337 0.78773 0.81129 0.79704 1.17194 1.20271 1.18151 1.21487 0.85924 0.94857 1.01105 1.24114 0.86373 0.85207 0.73240 1.90664 1.82557 1.19829 1.48607 1.84482 1.25766 1.49367 1.72574 1.21212 0.96743 1.00895 0.90580 0.87181 1.19088 0.92636 0.99644 0.94101 1.21134 0.99289 1.00508 0.92910 1.21428 0.92229 0.98832 1.01114 1.21469 0.99566 0.99795 0.93588 1.21359 0.97458 0.99732 0.95649 1.21201 0.93483 1.00450 0.99904 0.90032 0.92530 0.94267 0.92624 0.91792 0.90496 0.90836 0.87470 0.85538 0.71284 0.84983 0.83324 0.83507 0.84740 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 9.57 71.98 0.69 -3.38 16 2 C -0.08 -2.71 2.70 -52.18 -0.14 -2.85 16 3 C -0.10 -3.19 8.70 71.98 0.63 -2.56 16 4 C -0.17 -6.86 4.07 -11.55 -0.05 -6.91 16 5 H 0.12 5.20 5.10 -2.38 -0.01 5.18 16 6 C 0.52 24.90 6.12 87.66 0.54 25.44 16 7 O -0.60 -29.76 14.78 -3.07 -0.05 -29.81 16 8 N -0.46 -22.32 1.69 -639.60 -1.08 -23.41 16 9 C -0.33 -17.71 8.90 84.04 0.75 -16.97 16 10 H 0.08 4.64 7.26 -2.91 -0.02 4.62 16 11 C 0.02 1.27 5.39 84.93 0.46 1.73 16 12 N -0.89 -49.17 13.96 21.67 0.30 -48.86 16 13 Si 0.92 39.41 24.87 68.60 1.71 41.12 16 14 H -0.25 -9.63 6.54 99.48 0.65 -8.97 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 C 0.09 3.96 4.80 85.63 0.41 4.37 16 18 C 0.47 19.46 8.40 71.24 0.60 20.06 16 19 O -0.53 -25.16 17.19 21.95 0.38 -24.79 16 20 O -0.51 -15.66 13.42 -51.38 -0.69 -16.35 16 21 C -0.08 -2.63 5.28 -11.54 -0.06 -2.69 16 22 H 0.11 4.02 7.67 -2.39 -0.02 4.00 16 23 C -0.05 -1.63 4.75 -19.86 -0.09 -1.73 16 24 C -0.12 -2.95 9.74 22.27 0.22 -2.74 16 25 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 26 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 27 C -0.12 -3.00 10.05 22.27 0.22 -2.77 16 28 C -0.13 -3.94 8.19 22.27 0.18 -3.76 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.04 7.99 -2.39 -0.02 2.02 16 31 H 0.04 1.65 5.77 -2.39 -0.01 1.63 16 32 H 0.05 1.76 7.00 -2.39 -0.02 1.74 16 33 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 34 H 0.08 2.02 8.00 -2.38 -0.02 2.01 16 35 H 0.28 14.33 8.31 -92.71 -0.77 13.55 16 36 H 0.11 4.58 2.73 -2.39 -0.01 4.57 16 37 H 0.13 5.11 7.35 -2.39 -0.02 5.10 16 38 H 0.43 8.67 9.10 -74.06 -0.67 7.99 16 39 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.11 3.60 5.81 -2.91 -0.02 3.58 16 Total: -1.00 -67.46 353.81 5.69 -61.77 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: 0.33 Total: 39.56 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 4.79 Total: 0.77 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -0.78 Total: -72.27 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -0.36 Total: -70.95 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.71 Total: 41.12 kcal Total: -67.46 5.69 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593987271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.640 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds