Wall clock time and date at job start Tue Mar 31 2020 11:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.38265 * 119.99793 * 265.18827 * 3 2 1 5 5 C 1.38212 * 119.99910 * 180.23229 * 4 3 2 6 6 C 1.38265 * 119.99700 * 359.80974 * 5 4 3 7 7 C 1.38202 * 120.00334 * 0.02562 * 6 5 4 8 8 C 1.38214 * 120.00086 * 84.99863 * 3 2 1 9 9 C 1.50692 * 120.00372 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.56259 * 334.04029 * 9 8 3 11 11 C 1.52998 * 117.50230 * 188.35016 * 9 8 3 12 12 C 1.52998 * 117.49964 * 119.72446 * 9 8 3 13 13 H 1.08990 * 117.50309 * 359.97438 * 12 9 8 14 14 C 1.50702 * 117.49703 * 214.98102 * 12 9 8 15 15 O 1.21294 * 120.00499 * 0.02562 * 14 12 9 16 16 N 1.34784 * 119.99891 * 180.02562 * 14 12 9 17 17 C 1.37096 * 119.99872 * 359.97438 * 16 14 12 18 18 H 1.07997 * 119.99843 * 326.76021 * 17 16 14 19 19 C 1.38948 * 119.99548 * 146.76167 * 17 16 14 20 20 N 1.31404 * 120.00308 * 334.46034 * 19 17 16 21 21 Si 1.86808 * 119.99748 * 154.46574 * 19 17 16 22 22 H 1.48504 * 109.47115 * 84.99405 * 21 19 17 23 23 H 1.48501 * 109.46965 * 204.99702 * 21 19 17 24 24 H 1.48503 * 109.46931 * 324.99433 * 21 19 17 25 25 C 1.46503 * 119.99953 * 180.02562 * 16 14 12 26 26 C 1.50701 * 109.47144 * 87.64815 * 25 16 14 27 27 O 1.20827 * 119.99986 * 359.97438 * 26 25 16 28 28 O 1.34225 * 119.99925 * 180.27575 * 26 25 16 29 29 H 1.09001 * 109.47092 * 299.99828 * 1 2 3 30 30 H 1.08995 * 109.47093 * 60.00437 * 1 2 3 31 31 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47601 * 240.00180 * 2 1 3 33 33 H 1.09000 * 109.47457 * 119.99288 * 2 1 3 34 34 H 1.07998 * 120.00112 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00104 * 179.78811 * 5 4 3 36 36 H 1.08003 * 119.99583 * 179.97438 * 6 5 4 37 37 H 1.08005 * 120.00484 * 179.97438 * 7 6 5 38 38 H 1.09000 * 117.50030 * 145.02379 * 11 9 8 39 39 H 1.08998 * 117.50058 * 359.97438 * 11 9 8 40 40 H 0.97000 * 120.00171 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.46792 * 327.64728 * 25 16 14 42 42 H 1.08995 * 109.46855 * 207.65278 * 25 16 14 43 43 H 0.96698 * 117.00347 * 179.72101 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3574 2.0391 -1.1932 5 6 2.8226 3.3406 -1.1928 6 6 2.9592 4.0256 0.0004 7 6 2.6310 3.4087 1.1928 8 6 2.1643 2.1072 1.1924 9 6 1.8054 1.4351 2.4925 10 1 1.0700 0.6336 2.4203 11 6 1.7847 2.3012 3.7535 12 6 2.9106 1.2874 3.5401 13 1 3.8974 1.6760 3.2889 14 6 2.8992 0.0451 4.3932 15 8 2.0353 -0.7915 4.2349 16 7 3.8490 -0.1364 5.3321 17 6 4.8257 0.8090 5.5107 18 1 5.1904 1.3748 4.6663 19 6 5.3464 1.0389 6.7783 20 7 4.6259 0.7688 7.8435 21 14 7.0706 1.7322 6.9681 22 1 7.0215 3.2135 6.8748 23 1 7.6202 1.3373 8.2899 24 1 7.9407 1.1970 5.8903 25 6 3.8382 -1.3443 6.1610 26 6 4.6035 -2.4391 5.4634 27 8 5.1059 -2.2318 4.3843 28 8 4.7219 -3.6463 6.0381 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.2510 1.5040 -2.1252 35 1 3.0798 3.8224 -2.1245 36 1 3.3231 5.0424 0.0007 37 1 2.7380 3.9436 2.1250 38 1 1.0358 2.0696 4.5110 39 1 2.0311 3.3572 3.6429 40 1 4.9893 0.9296 8.7284 41 1 2.8090 -1.6657 6.3214 42 1 4.3057 -1.1296 7.1220 43 1 5.2184 -4.3178 5.5506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597621995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:06 Heat of formation + Delta-G solvation = -77.115096 kcal Electronic energy + Delta-G solvation = -26790.566537 eV Core-core repulsion = 22994.469761 eV Total energy + Delta-G solvation = -3796.096776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.99378 -39.51171 -38.40245 -36.05119 -35.26814 -34.68910 -34.02830 -31.68778 -30.38243 -29.19186 -28.20421 -25.06824 -24.00233 -23.58357 -23.10343 -20.88048 -20.82207 -19.79473 -19.10305 -17.41263 -17.15002 -16.80841 -16.09662 -15.52062 -15.43819 -14.92378 -14.78216 -14.55623 -14.46405 -14.00048 -13.68180 -13.38094 -13.35897 -13.07856 -12.98272 -12.35439 -12.10161 -11.91137 -11.68373 -11.56172 -11.50807 -11.39782 -11.17579 -11.05272 -10.83722 -10.69516 -10.68356 -10.50871 -10.39927 -10.10114 -9.88745 -9.75928 -9.32438 -8.71306 -8.58299 -8.19594 -7.78418 -6.56035 -4.16494 1.49341 1.55012 3.03439 3.07512 3.16769 3.22895 3.37138 3.79366 3.85235 4.11244 4.51791 4.56306 4.88841 4.96132 4.98311 5.10530 5.16486 5.31338 5.41008 5.47309 5.54554 5.60576 5.68165 5.74075 5.79634 6.01081 6.05618 6.10502 6.13171 6.15047 6.21552 6.30822 6.36643 6.41385 6.49467 6.64300 6.65436 6.70766 6.78165 6.94620 7.15182 7.17967 7.35001 7.61917 8.18450 8.66806 8.93129 9.28685 9.71666 10.48128 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004426 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.144345 B = 6324.332720 C = 7502.776732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.072 4.072 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.037 4.037 9 C -0.108 4.108 10 H 0.124 0.876 11 C -0.143 4.143 12 C -0.129 4.129 13 H 0.120 0.880 14 C 0.511 3.489 15 O -0.599 6.599 16 N -0.420 5.420 17 C -0.333 4.333 18 H 0.095 0.905 19 C 0.042 3.958 20 N -0.858 5.858 21 Si 0.910 3.090 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.268 1.268 25 C 0.121 3.879 26 C 0.460 3.540 27 O -0.513 6.513 28 O -0.527 6.527 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.273 0.727 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 2.369 -9.621 10.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.072 4.072 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.136 4.136 8 C -0.037 4.037 9 C -0.127 4.127 10 H 0.142 0.858 11 C -0.181 4.181 12 C -0.150 4.150 13 H 0.137 0.863 14 C 0.301 3.699 15 O -0.484 6.484 16 N -0.138 5.138 17 C -0.460 4.460 18 H 0.112 0.888 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.005 4.005 26 C 0.301 3.699 27 O -0.400 6.400 28 O -0.338 6.338 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -3.798 2.325 -9.543 10.531 hybrid contribution 1.534 -0.050 -0.112 1.539 sum -2.264 2.275 -9.655 10.174 Atomic orbital electron populations 1.21721 0.94839 1.01624 1.01903 1.20585 0.96158 0.92733 1.03291 1.19724 0.98958 0.96152 0.92395 1.20963 1.00409 0.95174 0.97210 1.21037 1.00885 0.94964 0.97840 1.21052 1.00839 0.99782 0.92562 1.21110 0.99379 0.94737 0.98352 1.19101 0.97967 0.93490 0.93112 1.21166 1.02454 1.02048 0.86983 0.85821 1.22955 1.00561 0.96065 0.98494 1.22042 0.95641 0.97765 0.99555 0.86255 1.19463 0.81046 0.86703 0.82647 1.90526 1.39054 1.46626 1.72220 1.42931 1.24383 1.14851 1.31595 1.19398 1.15194 1.17231 0.94165 0.88765 1.25302 0.99341 0.96751 0.94975 1.69914 1.35176 1.45685 0.98687 0.86209 0.82826 0.79355 0.78006 1.19860 1.20559 1.19295 1.20960 1.00388 0.81810 0.97349 1.25043 0.78133 0.82230 0.84496 1.90631 1.45832 1.81477 1.22014 1.84605 1.71708 1.23457 1.54050 0.92228 0.93044 0.92497 0.91514 0.89879 0.86458 0.86570 0.86397 0.85700 0.88274 0.88305 0.91649 0.88153 0.83702 0.74853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.74 37.16 0.36 -1.41 16 2 C -0.09 -1.26 5.38 -27.88 -0.15 -1.41 16 3 C -0.07 -1.06 5.13 -104.62 -0.54 -1.60 16 4 C -0.12 -1.54 9.68 -39.58 -0.38 -1.92 16 5 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 6 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 7 C -0.12 -1.68 9.30 -39.58 -0.37 -2.05 16 8 C -0.04 -0.58 5.61 -104.62 -0.59 -1.16 16 9 C -0.11 -1.89 4.65 -91.78 -0.43 -2.32 16 10 H 0.12 2.29 5.47 -51.93 -0.28 2.00 16 11 C -0.14 -2.46 9.56 -26.73 -0.26 -2.72 16 12 C -0.13 -2.63 4.93 -91.77 -0.45 -3.08 16 13 H 0.12 2.45 6.73 -51.93 -0.35 2.10 16 14 C 0.51 12.43 7.37 -10.98 -0.08 12.34 16 15 O -0.60 -15.46 15.88 5.55 0.09 -15.37 16 16 N -0.42 -10.48 2.05 -116.09 -0.24 -10.72 16 17 C -0.33 -8.34 8.72 -14.93 -0.13 -8.47 16 18 H 0.09 2.31 6.50 -52.49 -0.34 1.97 16 19 C 0.04 1.03 4.87 -17.47 -0.09 0.94 16 20 N -0.86 -21.39 11.46 55.50 0.64 -20.75 16 21 Si 0.91 19.13 29.62 -169.99 -5.04 14.09 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 C 0.12 2.83 5.56 -5.19 -0.03 2.80 16 26 C 0.46 10.24 8.38 36.01 0.30 10.54 16 27 O -0.51 -12.83 17.16 -18.75 -0.32 -13.15 16 28 O -0.53 -9.30 13.42 -39.25 -0.53 -9.83 16 29 H 0.06 0.78 7.16 -51.93 -0.37 0.41 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.08 1.37 6.95 -51.93 -0.36 1.01 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 37 H 0.13 1.66 6.02 -52.48 -0.32 1.34 16 38 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 39 H 0.10 1.46 6.18 -51.93 -0.32 1.14 16 40 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 41 H 0.10 2.30 7.49 -51.93 -0.39 1.91 16 42 H 0.15 3.48 5.40 -51.93 -0.28 3.20 16 43 H 0.39 4.98 9.10 45.56 0.41 5.40 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -30.53 361.87 -8.25 -38.78 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.69 Total: 14.92 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.62 Total: -3.44 kcal Atomic # 7 Polarization: -31.87 SS G_CDS: 0.40 Total: -31.47 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.76 Total: -38.35 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.04 Total: 14.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.53 -8.25 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597621995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.331 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds