Wall clock time and date at job start Tue Mar 31 2020 11:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46933 * 2 1 4 4 C 1.38265 * 119.99793 * 265.18827 * 3 2 1 5 5 C 1.38212 * 119.99910 * 180.23229 * 4 3 2 6 6 C 1.38265 * 119.99700 * 359.80974 * 5 4 3 7 7 C 1.38202 * 120.00334 * 0.02562 * 6 5 4 8 8 C 1.38214 * 120.00086 * 84.99863 * 3 2 1 9 9 C 1.50692 * 120.00372 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.56259 * 334.04029 * 9 8 3 11 11 C 1.52998 * 117.50230 * 188.35016 * 9 8 3 12 12 C 1.52998 * 117.49964 * 119.72446 * 9 8 3 13 13 H 1.08990 * 117.50309 * 359.97438 * 12 9 8 14 14 C 1.50702 * 117.49703 * 214.98102 * 12 9 8 15 15 O 1.21294 * 120.00499 * 0.02562 * 14 12 9 16 16 N 1.34784 * 119.99891 * 180.02562 * 14 12 9 17 17 C 1.37096 * 119.99872 * 359.97438 * 16 14 12 18 18 H 1.07997 * 119.99843 * 326.76021 * 17 16 14 19 19 C 1.38948 * 119.99548 * 146.76167 * 17 16 14 20 20 N 1.31404 * 120.00308 * 334.46034 * 19 17 16 21 21 Si 1.86808 * 119.99748 * 154.46574 * 19 17 16 22 22 H 1.48504 * 109.47115 * 84.99405 * 21 19 17 23 23 H 1.48501 * 109.46965 * 204.99702 * 21 19 17 24 24 H 1.48503 * 109.46931 * 324.99433 * 21 19 17 25 25 C 1.46503 * 119.99953 * 180.02562 * 16 14 12 26 26 C 1.50701 * 109.47144 * 87.64815 * 25 16 14 27 27 O 1.20827 * 119.99986 * 359.97438 * 26 25 16 28 28 O 1.34225 * 119.99925 * 180.27575 * 26 25 16 29 29 H 1.09001 * 109.47092 * 299.99828 * 1 2 3 30 30 H 1.08995 * 109.47093 * 60.00437 * 1 2 3 31 31 H 1.08999 * 109.46676 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47601 * 240.00180 * 2 1 3 33 33 H 1.09000 * 109.47457 * 119.99288 * 2 1 3 34 34 H 1.07998 * 120.00112 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00104 * 179.78811 * 5 4 3 36 36 H 1.08003 * 119.99583 * 179.97438 * 6 5 4 37 37 H 1.08005 * 120.00484 * 179.97438 * 7 6 5 38 38 H 1.09000 * 117.50030 * 145.02379 * 11 9 8 39 39 H 1.08998 * 117.50058 * 359.97438 * 11 9 8 40 40 H 0.97000 * 120.00171 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.46792 * 327.64728 * 25 16 14 42 42 H 1.08995 * 109.46855 * 207.65278 * 25 16 14 43 43 H 0.96698 * 117.00347 * 179.72101 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3574 2.0391 -1.1932 5 6 2.8226 3.3406 -1.1928 6 6 2.9592 4.0256 0.0004 7 6 2.6310 3.4087 1.1928 8 6 2.1643 2.1072 1.1924 9 6 1.8054 1.4351 2.4925 10 1 1.0700 0.6336 2.4203 11 6 1.7847 2.3012 3.7535 12 6 2.9106 1.2874 3.5401 13 1 3.8974 1.6760 3.2889 14 6 2.8992 0.0451 4.3932 15 8 2.0353 -0.7915 4.2349 16 7 3.8490 -0.1364 5.3321 17 6 4.8257 0.8090 5.5107 18 1 5.1904 1.3748 4.6663 19 6 5.3464 1.0389 6.7783 20 7 4.6259 0.7688 7.8435 21 14 7.0706 1.7322 6.9681 22 1 7.0215 3.2135 6.8748 23 1 7.6202 1.3373 8.2899 24 1 7.9407 1.1970 5.8903 25 6 3.8382 -1.3443 6.1610 26 6 4.6035 -2.4391 5.4634 27 8 5.1059 -2.2318 4.3843 28 8 4.7219 -3.6463 6.0381 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.2510 1.5040 -2.1252 35 1 3.0798 3.8224 -2.1245 36 1 3.3231 5.0424 0.0007 37 1 2.7380 3.9436 2.1250 38 1 1.0358 2.0696 4.5110 39 1 2.0311 3.3572 3.6429 40 1 4.9893 0.9296 8.7284 41 1 2.8090 -1.6657 6.3214 42 1 4.3057 -1.1296 7.1220 43 1 5.2184 -4.3178 5.5506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597621995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:05 Heat of formation + Delta-G solvation = -93.188424 kcal Electronic energy + Delta-G solvation = -26791.263528 eV Core-core repulsion = 22994.469761 eV Total energy + Delta-G solvation = -3796.793768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56927 -40.97409 -39.99986 -37.57280 -36.93417 -36.54425 -35.06868 -33.59484 -31.51505 -30.26113 -29.95186 -26.94161 -25.30286 -24.72073 -24.54686 -22.54345 -21.93121 -21.13207 -20.81745 -19.15666 -18.82753 -18.42807 -17.43707 -17.26088 -16.75425 -16.56853 -16.46614 -16.07448 -15.85330 -15.46021 -14.99108 -14.73866 -14.68116 -14.37136 -14.08645 -13.98283 -13.66005 -13.34632 -13.29457 -13.08456 -12.76431 -12.73591 -12.63509 -12.60071 -12.46958 -12.24925 -12.14983 -11.80285 -11.68536 -11.63078 -11.38168 -11.25206 -11.16650 -10.54760 -9.69444 -9.63123 -9.33213 -8.42884 -6.09774 0.42794 0.53359 1.25313 1.37405 1.46405 1.56150 1.66423 2.07689 2.37390 2.65628 2.87579 3.01949 3.27264 3.71911 3.90354 3.93008 3.97974 4.07054 4.16099 4.26835 4.33740 4.34722 4.45444 4.49747 4.55283 4.66687 4.67243 4.72295 4.79664 4.83164 4.98893 5.08638 5.09510 5.14344 5.21994 5.29781 5.37539 5.44493 5.58389 5.65546 5.68003 5.76151 5.84557 6.17660 6.29442 7.02463 7.04121 7.40109 7.83706 8.62381 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.004426 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.144345 B = 6324.332720 C = 7502.776732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.063 4.063 9 C -0.087 4.087 10 H 0.106 0.894 11 C -0.128 4.128 12 C -0.154 4.154 13 H 0.114 0.886 14 C 0.497 3.503 15 O -0.627 6.627 16 N -0.430 5.430 17 C -0.353 4.353 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.880 5.880 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.276 1.276 25 C 0.116 3.884 26 C 0.468 3.532 27 O -0.545 6.545 28 O -0.509 6.509 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.279 0.721 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 3.806 -11.123 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.063 4.063 9 C -0.106 4.106 10 H 0.124 0.876 11 C -0.165 4.165 12 C -0.175 4.175 13 H 0.132 0.868 14 C 0.288 3.712 15 O -0.515 6.515 16 N -0.148 5.148 17 C -0.480 4.480 18 H 0.110 0.890 19 C -0.193 4.193 20 N -0.517 5.517 21 Si 0.796 3.204 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.201 1.201 25 C -0.010 4.010 26 C 0.311 3.689 27 O -0.435 6.435 28 O -0.322 6.322 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.158 0.842 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.954 3.739 -11.023 12.009 hybrid contribution 1.251 -0.577 0.352 1.422 sum -1.703 3.162 -10.672 11.260 Atomic orbital electron populations 1.21683 0.93745 1.02116 1.02028 1.20547 0.97164 0.92648 1.02239 1.19889 0.99551 0.96317 0.92972 1.21263 0.99731 0.95811 0.97266 1.21462 0.99100 0.94512 0.99012 1.21403 0.99994 1.00990 0.92003 1.21265 0.99441 0.94223 0.99588 1.19078 1.00323 0.94521 0.92363 1.21041 1.00074 1.01396 0.88050 0.87584 1.23059 0.98332 0.96964 0.98146 1.21921 0.96565 0.97455 1.01534 0.86796 1.20163 0.80515 0.87666 0.82855 1.90478 1.40050 1.47802 1.73151 1.43139 1.24541 1.15345 1.31740 1.19581 1.15773 1.18006 0.94648 0.88997 1.26013 1.02079 0.96870 0.94345 1.69967 1.36431 1.46144 0.99153 0.85264 0.78266 0.79152 0.77707 1.18734 1.19852 1.20071 1.20929 1.00441 0.82363 0.97284 1.24641 0.77367 0.83176 0.83750 1.90617 1.47204 1.82365 1.23266 1.84514 1.71664 1.22477 1.53578 0.93701 0.91179 0.91865 0.89834 0.93541 0.84116 0.83352 0.83719 0.85207 0.89106 0.85503 0.91124 0.88460 0.84213 0.71784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.74 71.98 0.70 -2.70 16 2 C -0.09 -2.50 5.38 29.85 0.16 -2.34 16 3 C -0.09 -2.50 5.13 -19.86 -0.10 -2.60 16 4 C -0.12 -2.84 9.68 22.27 0.22 -2.63 16 5 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 6 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 7 C -0.13 -3.46 9.30 22.27 0.21 -3.25 16 8 C -0.06 -1.97 5.61 -19.87 -0.11 -2.08 16 9 C -0.09 -3.16 4.65 -11.54 -0.05 -3.22 16 10 H 0.11 4.19 5.47 -2.38 -0.01 4.18 16 11 C -0.13 -4.48 9.56 30.59 0.29 -4.19 16 12 C -0.15 -6.54 4.93 -11.54 -0.06 -6.60 16 13 H 0.11 4.88 6.73 -2.39 -0.02 4.86 16 14 C 0.50 25.31 7.37 87.66 0.65 25.96 16 15 O -0.63 -34.15 15.88 -3.07 -0.05 -34.20 16 16 N -0.43 -22.27 2.05 -639.58 -1.31 -23.58 16 17 C -0.35 -18.10 8.72 84.04 0.73 -17.37 16 18 H 0.09 4.64 6.50 -2.91 -0.02 4.62 16 19 C 0.01 0.53 4.87 84.93 0.41 0.95 16 20 N -0.88 -44.11 11.46 21.66 0.25 -43.87 16 21 Si 0.97 38.92 29.62 68.60 2.03 40.95 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 25 C 0.12 5.59 5.56 85.63 0.48 6.07 16 26 C 0.47 21.11 8.38 71.24 0.60 21.71 16 27 O -0.54 -27.77 17.16 21.96 0.38 -27.39 16 28 O -0.51 -17.48 13.42 -51.37 -0.69 -18.17 16 29 H 0.04 1.21 7.16 -2.39 -0.02 1.20 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 33 H 0.05 1.63 6.95 -2.39 -0.02 1.62 16 34 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 36 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.13 3.26 6.02 -2.91 -0.02 3.25 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.13 3.66 6.18 -2.39 -0.01 3.64 16 40 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 41 H 0.10 4.67 7.49 -2.38 -0.02 4.65 16 42 H 0.14 6.88 5.40 -2.39 -0.01 6.87 16 43 H 0.42 9.88 9.10 -74.06 -0.67 9.21 16 Total: -1.00 -67.40 361.87 5.56 -61.84 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: 0.38 Total: 41.59 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.57 Total: 2.82 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.06 Total: -67.44 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -0.36 Total: -79.76 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -67.40 5.56 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597621995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.348 kcal (2) G-P(sol) polarization free energy of solvation -67.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds