Wall clock time and date at job start Tue Mar 31 2020 11:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47438 * 2 1 4 4 O 1.34442 * 124.92240 * 269.97922 * 3 2 1 5 5 C 1.34809 * 110.88914 * 180.02562 * 4 3 2 6 6 C 1.38945 * 133.49563 * 179.97438 * 5 4 3 7 7 C 1.37845 * 119.81863 * 180.02562 * 6 5 4 8 8 C 1.38746 * 120.68637 * 359.97438 * 7 6 5 9 9 C 1.36738 * 120.41336 * 0.02562 * 8 7 6 10 10 C 1.39406 * 119.72194 * 359.95662 * 9 8 7 11 11 C 1.34002 * 124.92166 * 89.99721 * 3 2 1 12 12 C 1.50699 * 126.90726 * 359.72104 * 11 3 2 13 13 N 1.46494 * 109.47064 * 89.99925 * 12 11 3 14 14 C 1.36929 * 120.00230 * 90.00200 * 13 12 11 15 15 H 1.08001 * 119.99888 * 353.75595 * 14 13 12 16 16 C 1.38814 * 120.00228 * 173.75633 * 14 13 12 17 17 N 1.31618 * 120.00110 * 33.93891 * 16 14 13 18 18 Si 1.86801 * 119.99960 * 213.93301 * 16 14 13 19 19 H 1.48501 * 109.46960 * 85.00114 * 18 16 14 20 20 H 1.48500 * 109.47242 * 204.99782 * 18 16 14 21 21 H 1.48496 * 109.47278 * 325.00296 * 18 16 14 22 22 C 1.46506 * 119.99869 * 269.99714 * 13 12 11 23 23 C 1.53006 * 109.46873 * 94.42409 * 22 13 12 24 24 C 1.50699 * 109.46991 * 179.97438 * 23 22 13 25 25 O 1.20824 * 120.00147 * 359.97438 * 24 23 22 26 26 O 1.34230 * 119.99755 * 180.02562 * 24 23 22 27 27 H 1.08996 * 109.47045 * 299.99977 * 1 2 3 28 28 H 1.08996 * 109.47129 * 59.99832 * 1 2 3 29 29 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47483 * 239.99851 * 2 1 3 31 31 H 1.08996 * 109.47129 * 120.00168 * 2 1 3 32 32 H 1.08008 * 120.08885 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.65459 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.79126 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.13474 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47133 * 210.00515 * 12 11 3 37 37 H 1.09006 * 109.47118 * 329.99651 * 12 11 3 38 38 H 0.97003 * 120.00176 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.46990 * 214.42114 * 22 13 12 40 40 H 1.08998 * 109.47200 * 334.42389 * 22 13 12 41 41 H 1.08994 * 109.47199 * 300.00098 * 23 22 13 42 42 H 1.09003 * 109.46763 * 59.99956 * 23 22 13 43 43 H 0.96696 * 116.99598 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2894 2.1463 -1.1023 5 6 2.7258 3.3791 -0.7754 6 6 3.1175 4.4840 -1.5214 7 6 3.5251 5.6343 -0.8804 8 6 3.5484 5.7024 0.5052 9 6 3.1669 4.6264 1.2577 10 6 2.7513 3.4545 0.6272 11 6 2.2881 2.1440 1.0987 12 6 2.1258 1.7029 2.5306 13 7 3.3735 1.0943 2.9984 14 6 4.3355 1.8709 3.5869 15 1 4.2199 2.9444 3.6158 16 6 5.4594 1.2786 4.1464 17 7 5.9699 0.1931 3.6046 18 14 6.2475 2.0222 5.6681 19 1 5.5537 1.5191 6.8808 20 1 7.6806 1.6369 5.7219 21 1 6.1345 3.5018 5.6112 22 6 3.5920 -0.3453 2.8367 23 6 4.3652 -0.6015 1.5415 24 6 4.5905 -2.0822 1.3755 25 8 4.1756 -2.8535 2.2079 26 8 5.2529 -2.5442 0.3033 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 3.1035 4.4413 -2.6005 33 1 3.8294 6.4914 -1.4629 34 1 3.8699 6.6111 0.9924 35 1 3.1872 4.6842 2.3360 36 1 1.8872 2.5661 3.1518 37 1 1.3185 0.9735 2.5968 38 1 6.7550 -0.2210 3.9958 39 1 4.1656 -0.7231 3.6831 40 1 2.6301 -0.8561 2.7927 41 1 3.7916 -0.2237 0.6952 42 1 5.3271 -0.0906 1.5856 43 1 5.3725 -3.5017 0.2402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597807579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:54 Heat of formation + Delta-G solvation = -41.201329 kcal Electronic energy + Delta-G solvation = -27725.678572 eV Core-core repulsion = 23931.139134 eV Total energy + Delta-G solvation = -3794.539438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02550 -39.42856 -37.54983 -36.53936 -35.35539 -33.98034 -32.38516 -31.16219 -30.28823 -29.89787 -28.34825 -25.79235 -24.61372 -23.85560 -22.40743 -21.75642 -20.93534 -19.90282 -19.32781 -17.44876 -16.88660 -16.50985 -16.49481 -15.78627 -15.49498 -15.26690 -15.17154 -14.67751 -14.23491 -13.84653 -13.63740 -13.48668 -13.27921 -12.92729 -12.83150 -12.55220 -12.10976 -11.98419 -11.80525 -11.75080 -11.59504 -11.28904 -11.04354 -10.91415 -10.85198 -10.80153 -10.66299 -10.34376 -10.15796 -9.94579 -9.76958 -9.63792 -9.35396 -8.33812 -8.22572 -7.58834 -7.15696 -5.98386 -3.12843 1.30877 1.73827 2.80569 3.06978 3.12138 3.37929 3.46898 3.48605 3.90019 4.10480 4.48033 4.77020 5.03858 5.16768 5.17876 5.25463 5.33678 5.39700 5.46788 5.54801 5.57346 5.76975 5.80522 5.95482 5.98082 6.08736 6.10252 6.15405 6.26352 6.32884 6.40722 6.48303 6.60185 6.65352 6.68083 6.71915 6.82776 6.96669 7.09871 7.12351 7.45540 7.64566 7.66214 7.82538 8.17296 8.67485 9.08843 9.73083 10.17134 11.09410 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.006675 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.974036 B = 4193.640874 C = 6040.010280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.014 3.986 4 O -0.200 6.200 5 C 0.047 3.953 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.147 4.147 9 C -0.056 4.056 10 C -0.105 4.105 11 C -0.160 4.160 12 C 0.210 3.790 13 N -0.583 5.583 14 C -0.257 4.257 15 H 0.080 0.920 16 C 0.011 3.989 17 N -0.887 5.887 18 Si 0.886 3.114 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.281 1.281 22 C 0.181 3.819 23 C -0.125 4.125 24 C 0.485 3.515 25 O -0.533 6.533 26 O -0.529 6.529 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.256 0.744 39 H 0.097 0.903 40 H 0.021 0.979 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.503 3.211 -8.727 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.034 4.034 4 O -0.102 6.102 5 C -0.001 4.001 6 C -0.134 4.134 7 C -0.121 4.121 8 C -0.165 4.165 9 C -0.074 4.074 10 C -0.107 4.107 11 C -0.165 4.165 12 C 0.083 3.917 13 N -0.303 5.303 14 C -0.385 4.385 15 H 0.098 0.902 16 C -0.187 4.187 17 N -0.532 5.532 18 Si 0.715 3.285 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.207 1.207 22 C 0.056 3.944 23 C -0.165 4.165 24 C 0.329 3.671 25 O -0.422 6.422 26 O -0.340 6.340 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.157 0.843 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.563 3.256 -8.635 11.932 hybrid contribution 1.019 -0.233 0.506 1.161 sum -6.544 3.023 -8.129 10.865 Atomic orbital electron populations 1.21772 0.94134 1.02028 1.02453 1.20314 0.96227 0.87942 1.04424 1.21915 1.03703 0.94477 0.83262 1.83864 1.70179 1.21723 1.34444 1.19590 1.01126 0.85515 0.93850 1.19785 1.04195 0.90334 0.99105 1.20774 0.99992 0.96672 0.94637 1.20682 1.03135 0.98912 0.93762 1.20355 0.95851 0.90906 1.00260 1.19856 1.03097 0.95191 0.92511 1.22340 1.03733 0.91681 0.98711 1.19322 0.89128 0.96793 0.86473 1.44518 1.15308 1.03805 1.66636 1.19209 1.00289 0.90865 1.28150 0.90171 1.24690 0.96842 0.97312 0.99856 1.70112 1.22019 1.23661 1.37367 0.86537 0.77684 0.78706 0.85588 1.21440 1.22144 1.20688 1.20922 0.94728 0.82831 0.95953 1.22615 1.07167 0.85326 1.01344 1.24454 0.72241 0.93581 0.76833 1.90604 1.49339 1.59636 1.42605 1.84673 1.71851 1.30313 1.47178 0.91974 0.92577 0.91858 0.90483 0.88103 0.85887 0.85555 0.85966 0.85531 0.91912 0.92686 0.93329 0.88489 0.96081 0.91138 0.84333 0.75173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.89 37.16 0.37 -1.38 16 2 C -0.05 -0.77 4.90 -27.88 -0.14 -0.90 16 3 C 0.01 0.25 5.47 -35.80 -0.20 0.06 16 4 O -0.20 -3.64 10.58 3.93 0.04 -3.60 16 5 C 0.05 0.84 7.42 -38.47 -0.29 0.55 16 6 C -0.12 -1.72 10.07 -39.46 -0.40 -2.12 16 7 C -0.10 -1.37 10.01 -39.54 -0.40 -1.77 16 8 C -0.15 -2.11 9.98 -39.94 -0.40 -2.51 16 9 C -0.06 -0.95 10.05 -39.69 -0.40 -1.35 16 10 C -0.11 -1.98 6.38 -105.16 -0.67 -2.65 16 11 C -0.16 -3.01 5.87 -102.66 -0.60 -3.61 16 12 C 0.21 4.01 5.79 -5.20 -0.03 3.98 16 13 N -0.58 -13.22 2.52 -174.60 -0.44 -13.66 16 14 C -0.26 -6.45 9.63 -15.06 -0.15 -6.60 16 15 H 0.08 1.99 8.00 -52.49 -0.42 1.57 16 16 C 0.01 0.29 4.91 -17.43 -0.09 0.20 16 17 N -0.89 -23.62 8.53 55.49 0.47 -23.14 16 18 Si 0.89 20.78 29.67 -169.99 -5.04 15.74 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 C 0.18 4.12 3.71 -4.04 -0.01 4.10 16 23 C -0.12 -2.71 5.11 -27.88 -0.14 -2.85 16 24 C 0.48 9.89 8.33 36.00 0.30 10.19 16 25 O -0.53 -11.89 16.74 -18.75 -0.31 -12.20 16 26 O -0.53 -9.01 13.42 -39.26 -0.53 -9.54 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.61 4.75 -51.93 -0.25 1.36 16 32 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.13 2.12 8.04 -52.48 -0.42 1.70 16 36 H 0.06 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.05 0.94 7.45 -51.93 -0.39 0.56 16 38 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.10 2.55 5.85 -51.93 -0.30 2.24 16 40 H 0.02 0.44 6.93 -51.93 -0.36 0.08 16 41 H 0.07 1.44 4.71 -51.93 -0.24 1.20 16 42 H 0.14 3.50 6.27 -51.93 -0.33 3.18 16 43 H 0.39 4.68 9.10 45.56 0.41 5.10 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -29.91 354.50 -8.51 -38.41 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.81 Total: 9.30 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.23 Total: -6.65 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.03 Total: -36.80 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.80 Total: -25.34 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.04 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.91 -8.51 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597807579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.789 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds