Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47438 * 2 1 4 4 O 1.34442 * 124.92240 * 269.97922 * 3 2 1 5 5 C 1.34809 * 110.88914 * 180.02562 * 4 3 2 6 6 C 1.38945 * 133.49563 * 179.97438 * 5 4 3 7 7 C 1.37845 * 119.81863 * 180.02562 * 6 5 4 8 8 C 1.38746 * 120.68637 * 359.97438 * 7 6 5 9 9 C 1.36738 * 120.41336 * 0.02562 * 8 7 6 10 10 C 1.39406 * 119.72194 * 359.95662 * 9 8 7 11 11 C 1.34002 * 124.92166 * 89.99721 * 3 2 1 12 12 C 1.50699 * 126.90726 * 359.72104 * 11 3 2 13 13 N 1.46494 * 109.47064 * 89.99925 * 12 11 3 14 14 C 1.36929 * 120.00230 * 90.00200 * 13 12 11 15 15 H 1.08001 * 119.99888 * 353.75595 * 14 13 12 16 16 C 1.38814 * 120.00228 * 173.75633 * 14 13 12 17 17 N 1.31618 * 120.00110 * 33.93891 * 16 14 13 18 18 Si 1.86801 * 119.99960 * 213.93301 * 16 14 13 19 19 H 1.48501 * 109.46960 * 85.00114 * 18 16 14 20 20 H 1.48500 * 109.47242 * 204.99782 * 18 16 14 21 21 H 1.48496 * 109.47278 * 325.00296 * 18 16 14 22 22 C 1.46506 * 119.99869 * 269.99714 * 13 12 11 23 23 C 1.53006 * 109.46873 * 94.42409 * 22 13 12 24 24 C 1.50699 * 109.46991 * 179.97438 * 23 22 13 25 25 O 1.20824 * 120.00147 * 359.97438 * 24 23 22 26 26 O 1.34230 * 119.99755 * 180.02562 * 24 23 22 27 27 H 1.08996 * 109.47045 * 299.99977 * 1 2 3 28 28 H 1.08996 * 109.47129 * 59.99832 * 1 2 3 29 29 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47483 * 239.99851 * 2 1 3 31 31 H 1.08996 * 109.47129 * 120.00168 * 2 1 3 32 32 H 1.08008 * 120.08885 * 359.97438 * 6 5 4 33 33 H 1.08002 * 119.65459 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.79126 * 180.02562 * 8 7 6 35 35 H 1.08004 * 120.13474 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47133 * 210.00515 * 12 11 3 37 37 H 1.09006 * 109.47118 * 329.99651 * 12 11 3 38 38 H 0.97003 * 120.00176 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.46990 * 214.42114 * 22 13 12 40 40 H 1.08998 * 109.47200 * 334.42389 * 22 13 12 41 41 H 1.08994 * 109.47199 * 300.00098 * 23 22 13 42 42 H 1.09003 * 109.46763 * 59.99956 * 23 22 13 43 43 H 0.96696 * 116.99598 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2894 2.1463 -1.1023 5 6 2.7258 3.3791 -0.7754 6 6 3.1175 4.4840 -1.5214 7 6 3.5251 5.6343 -0.8804 8 6 3.5484 5.7024 0.5052 9 6 3.1669 4.6264 1.2577 10 6 2.7513 3.4545 0.6272 11 6 2.2881 2.1440 1.0987 12 6 2.1258 1.7029 2.5306 13 7 3.3735 1.0943 2.9984 14 6 4.3355 1.8709 3.5869 15 1 4.2199 2.9444 3.6158 16 6 5.4594 1.2786 4.1464 17 7 5.9699 0.1931 3.6046 18 14 6.2475 2.0222 5.6681 19 1 5.5537 1.5191 6.8808 20 1 7.6806 1.6369 5.7219 21 1 6.1345 3.5018 5.6112 22 6 3.5920 -0.3453 2.8367 23 6 4.3652 -0.6015 1.5415 24 6 4.5905 -2.0822 1.3755 25 8 4.1756 -2.8535 2.2079 26 8 5.2529 -2.5442 0.3033 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 3.1035 4.4413 -2.6005 33 1 3.8294 6.4914 -1.4629 34 1 3.8699 6.6111 0.9924 35 1 3.1872 4.6842 2.3360 36 1 1.8872 2.5661 3.1518 37 1 1.3185 0.9735 2.5968 38 1 6.7550 -0.2210 3.9958 39 1 4.1656 -0.7231 3.6831 40 1 2.6301 -0.8561 2.7927 41 1 3.7916 -0.2237 0.6952 42 1 5.3271 -0.0906 1.5856 43 1 5.3725 -3.5017 0.2402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597807579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = -57.042657 kcal Electronic energy + Delta-G solvation = -27726.365503 eV Core-core repulsion = 23931.139134 eV Total energy + Delta-G solvation = -3795.226370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.33467 -41.04145 -38.74420 -38.21112 -36.90750 -35.34983 -33.74899 -32.93048 -31.81273 -31.22640 -29.62829 -27.41573 -26.36168 -25.01158 -23.66615 -23.40809 -22.16066 -21.57590 -20.71022 -19.09602 -18.52291 -17.94128 -17.77778 -17.25087 -17.09520 -16.85420 -16.49393 -16.29065 -15.58513 -15.33002 -14.99314 -14.93449 -14.69806 -14.41926 -14.08480 -13.97972 -13.64473 -13.40205 -13.33015 -13.00767 -12.86602 -12.82726 -12.57645 -12.53636 -12.37894 -12.27774 -12.00756 -11.95199 -11.87414 -11.58638 -11.47483 -11.36166 -10.70583 -10.24852 -9.47040 -9.08942 -8.80638 -7.93477 -5.07218 0.08511 0.50743 1.41227 1.46846 1.48052 1.56059 1.58717 1.85866 2.39181 2.57682 2.88260 3.20570 3.54804 3.80739 3.82810 4.04385 4.10240 4.20155 4.24835 4.31385 4.41766 4.46289 4.59330 4.61589 4.69686 4.73639 4.81087 4.84611 4.88827 4.99217 5.02884 5.09641 5.17442 5.29332 5.41232 5.46994 5.54109 5.61763 5.67624 5.68974 5.78190 5.88154 5.90039 6.26532 6.35677 7.14881 7.19748 7.87401 8.28455 9.12129 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.006675 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.974036 B = 4193.640874 C = 6040.010280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 C 0.020 3.980 4 O -0.208 6.208 5 C 0.020 3.980 6 C -0.118 4.118 7 C -0.093 4.093 8 C -0.139 4.139 9 C -0.084 4.084 10 C -0.135 4.135 11 C -0.185 4.185 12 C 0.214 3.786 13 N -0.594 5.594 14 C -0.253 4.253 15 H 0.077 0.923 16 C -0.034 4.034 17 N -0.906 5.906 18 Si 0.936 3.064 19 H -0.293 1.293 20 H -0.304 1.304 21 H -0.274 1.274 22 C 0.192 3.808 23 C -0.112 4.112 24 C 0.493 3.507 25 O -0.554 6.554 26 O -0.520 6.520 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 4.202 -10.480 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C -0.028 4.028 4 O -0.111 6.111 5 C -0.027 4.027 6 C -0.136 4.136 7 C -0.111 4.111 8 C -0.157 4.157 9 C -0.102 4.102 10 C -0.136 4.136 11 C -0.190 4.190 12 C 0.088 3.912 13 N -0.314 5.314 14 C -0.381 4.381 15 H 0.095 0.905 16 C -0.230 4.230 17 N -0.552 5.552 18 Si 0.766 3.234 19 H -0.221 1.221 20 H -0.231 1.231 21 H -0.199 1.199 22 C 0.066 3.934 23 C -0.152 4.152 24 C 0.338 3.662 25 O -0.445 6.445 26 O -0.333 6.333 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -8.215 4.259 -10.414 13.931 hybrid contribution 1.186 -0.465 0.936 1.581 sum -7.030 3.794 -9.478 12.395 Atomic orbital electron populations 1.21743 0.91820 1.03541 1.02620 1.20414 0.98166 0.86175 1.04210 1.22360 1.02393 0.95175 0.82902 1.83846 1.70435 1.22167 1.34609 1.20079 1.02432 0.86132 0.94034 1.20282 1.03097 0.89683 1.00542 1.21295 0.98013 0.97337 0.94439 1.21095 1.01234 0.98902 0.94496 1.20498 0.97699 0.91743 1.00265 1.20138 1.04253 0.95758 0.93456 1.22216 1.05631 0.92658 0.98450 1.19344 0.87999 0.96979 0.86919 1.44577 1.15708 1.03715 1.67435 1.19355 1.00237 0.90954 1.27603 0.90489 1.25194 0.97946 0.98258 1.01629 1.70261 1.22206 1.24850 1.37845 0.85730 0.76243 0.78344 0.83070 1.22068 1.23148 1.19948 1.20627 0.94797 0.82945 0.95017 1.22260 1.05278 0.86342 1.01312 1.24028 0.72162 0.92911 0.77130 1.90599 1.50400 1.59991 1.43497 1.84581 1.70660 1.32747 1.45334 0.92173 0.92056 0.89662 0.89467 0.89377 0.83232 0.81278 0.83108 0.86447 0.92113 0.90892 0.94350 0.92181 0.94676 0.90002 0.87711 0.72173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.36 16 2 C -0.05 -1.49 4.90 29.85 0.15 -1.34 16 3 C 0.02 0.68 5.47 24.72 0.14 0.82 16 4 O -0.21 -7.46 10.58 -8.86 -0.09 -7.55 16 5 C 0.02 0.70 7.42 22.99 0.17 0.88 16 6 C -0.12 -3.22 10.07 22.35 0.23 -2.99 16 7 C -0.09 -2.17 10.01 22.30 0.22 -1.95 16 8 C -0.14 -3.70 9.98 22.04 0.22 -3.48 16 9 C -0.08 -2.85 10.05 22.20 0.22 -2.63 16 10 C -0.13 -5.08 6.38 -20.22 -0.13 -5.21 16 11 C -0.19 -7.02 5.87 -18.60 -0.11 -7.13 16 12 C 0.21 8.26 5.79 85.63 0.50 8.76 16 13 N -0.59 -27.48 2.52 -706.33 -1.78 -29.26 16 14 C -0.25 -12.96 9.63 84.04 0.81 -12.15 16 15 H 0.08 3.93 8.00 -2.91 -0.02 3.90 16 16 C -0.03 -1.83 4.91 84.86 0.42 -1.41 16 17 N -0.91 -49.79 8.53 21.65 0.18 -49.60 16 18 Si 0.94 43.77 29.67 68.60 2.04 45.81 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 C 0.19 8.89 3.71 86.38 0.32 9.21 16 23 C -0.11 -4.92 5.11 29.85 0.15 -4.77 16 24 C 0.49 19.93 8.33 71.24 0.59 20.53 16 25 O -0.55 -24.57 16.74 21.97 0.37 -24.20 16 26 O -0.52 -16.90 13.42 -51.42 -0.69 -17.59 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 31 H 0.09 2.73 4.75 -2.39 -0.01 2.72 16 32 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.12 4.05 8.04 -2.91 -0.02 4.03 16 36 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 37 H 0.07 2.50 7.45 -2.38 -0.02 2.48 16 38 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 39 H 0.06 3.26 5.85 -2.38 -0.01 3.24 16 40 H 0.04 1.49 6.93 -2.39 -0.02 1.48 16 41 H 0.08 3.36 4.71 -2.39 -0.01 3.35 16 42 H 0.11 5.45 6.27 -2.39 -0.01 5.43 16 43 H 0.42 9.02 9.10 -74.06 -0.67 8.35 16 Total: -1.00 -66.21 354.50 5.01 -61.20 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.38 Total: 26.43 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 4.61 Total: -5.25 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.60 Total: -78.86 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -0.42 Total: -49.34 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.04 Total: 45.81 kcal Total: -66.21 5.01 -61.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597807579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.161 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds