Wall clock time and date at job start Tue Mar 31 2020 12:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47076 * 74.17013 * 3 2 1 5 5 H 1.08995 * 109.46875 * 304.99675 * 4 3 2 6 6 N 1.46900 * 109.47196 * 64.99790 * 4 3 2 7 7 C 1.46896 * 111.00195 * 204.99701 * 6 4 3 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 4 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.50699 * 109.46859 * 184.99887 * 4 3 2 26 26 O 1.20828 * 119.99931 * 239.99808 * 25 4 3 27 27 O 1.34229 * 120.00282 * 59.99950 * 25 4 3 28 28 H 4.44647 * 5.63343 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47203 * 314.16906 * 3 2 1 30 30 H 1.09005 * 109.46790 * 194.17176 * 3 2 1 31 31 H 1.00901 * 111.00271 * 328.95420 * 6 4 3 32 32 H 1.09005 * 109.46944 * 59.99947 * 7 6 4 33 33 H 1.09002 * 109.47398 * 300.00389 * 7 6 4 34 34 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 36 36 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 37 37 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 38 38 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 39 39 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 40 40 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 41 41 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 43 43 H 0.96697 * 117.00101 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3926 -1.3878 5 1 2.7220 -1.3497 -1.6767 6 7 2.7671 0.6357 -2.3621 7 6 2.6886 0.0741 -3.7172 8 6 2.2871 1.1557 -4.6867 9 6 0.9494 1.3833 -4.9527 10 6 0.5778 2.3752 -5.8412 11 6 1.5427 3.1447 -6.4622 12 6 2.8855 2.9149 -6.2011 13 8 3.8366 3.6674 -6.8143 14 6 3.3825 4.6743 -7.7209 15 6 4.5871 5.4126 -8.3081 16 6 4.1082 6.4749 -9.2637 17 1 3.0504 6.6102 -9.4348 18 6 5.0203 7.2748 -9.9189 19 7 6.3084 7.1103 -9.7102 20 14 4.4267 8.5911 -11.1040 21 1 4.2157 9.8626 -10.3662 22 1 5.4449 8.7975 -12.1650 23 1 3.1475 8.1597 -11.7226 24 6 3.2558 1.9192 -5.3086 25 6 4.6581 -0.5115 -1.3557 26 8 5.3350 0.1885 -2.0711 27 8 5.2441 -1.3951 -0.5324 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0097 -0.7152 0.7371 30 1 3.0089 0.9973 0.2516 31 1 1.8953 1.0708 -2.0999 32 1 1.9471 -0.7247 -3.7371 33 1 3.6617 -0.3264 -4.0015 34 1 0.1934 0.7858 -4.4648 35 1 -0.4676 2.5513 -6.0470 36 1 1.2519 3.9222 -7.1532 37 1 2.8136 4.2088 -8.5257 38 1 2.7470 5.3823 -7.1889 39 1 5.1557 5.8782 -7.5031 40 1 5.2231 4.7050 -8.8400 41 1 6.9501 7.6733 -10.1708 42 1 4.3004 1.7409 -5.1005 43 1 6.2101 -1.4354 -0.5474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602693947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:56 Heat of formation + Delta-G solvation = -56.217095 kcal Electronic energy + Delta-G solvation = -24828.586541 eV Core-core repulsion = 21033.395970 eV Total energy + Delta-G solvation = -3795.190571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67424 -39.75592 -37.86509 -36.82984 -36.21978 -34.06765 -33.33653 -31.82615 -30.80141 -29.65183 -29.00560 -25.93390 -25.33063 -24.61959 -22.32676 -21.62754 -21.24704 -20.16328 -18.69026 -18.38672 -17.61211 -17.05383 -16.33504 -16.10934 -15.81341 -15.61794 -15.48626 -15.26335 -15.17513 -14.51918 -14.44079 -13.82751 -13.72098 -13.47085 -13.14098 -12.88115 -12.67357 -12.53869 -12.29287 -12.12823 -11.70579 -11.44706 -11.36469 -11.22277 -10.95192 -10.86156 -10.68762 -10.63447 -10.60745 -10.40089 -9.82839 -9.63045 -9.27239 -8.93971 -8.67244 -8.42478 -7.81096 -6.07769 -4.12425 1.44498 1.70238 1.87403 2.32735 2.36937 2.59813 3.28992 3.34720 3.37637 3.63733 3.87052 3.88963 4.14334 4.35703 4.42817 4.52385 4.78288 4.93859 4.97191 5.06367 5.11406 5.26287 5.28451 5.29235 5.40086 5.48457 5.53587 5.75043 5.87060 6.06992 6.09368 6.21769 6.23187 6.40460 6.57396 6.61084 6.67909 6.77072 6.92575 7.01414 7.13508 7.54360 7.66691 7.67797 7.84491 8.10971 8.26755 8.93200 9.51641 11.03826 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002218 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.543435 B =12622.296968 C =13592.470421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C -0.009 4.009 4 C 0.106 3.894 5 H 0.088 0.912 6 N -0.663 5.663 7 C 0.103 3.897 8 C -0.053 4.053 9 C -0.166 4.166 10 C -0.082 4.082 11 C -0.209 4.209 12 C 0.144 3.856 13 O -0.315 6.315 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.132 4.132 25 C 0.474 3.526 26 O -0.478 6.478 27 O -0.523 6.523 28 H 0.220 0.780 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.359 0.641 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.131 0.869 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 -19.468 20.486 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C -0.046 4.046 4 C -0.006 4.006 5 H 0.105 0.895 6 N -0.298 5.298 7 C -0.025 4.025 8 C -0.054 4.054 9 C -0.184 4.184 10 C -0.100 4.100 11 C -0.228 4.228 12 C 0.097 3.903 13 O -0.228 6.228 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.152 4.152 25 C 0.313 3.687 26 O -0.362 6.362 27 O -0.336 6.336 28 H 0.236 0.764 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.182 0.818 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.149 0.851 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -10.129 -18.935 20.150 29.447 hybrid contribution -0.810 0.404 -0.761 1.183 sum -10.939 -18.531 19.389 28.966 Atomic orbital electron populations 1.24990 0.95966 1.00434 0.98899 1.22732 0.94105 1.01143 1.01964 1.18785 0.85515 1.04951 0.95314 1.20886 0.88546 0.97183 0.93973 0.89455 1.59967 1.39374 1.29853 1.00619 1.20941 1.01386 0.93720 0.86406 1.19253 0.92785 0.96651 0.96676 1.20754 0.94949 1.00849 1.01896 1.20820 0.98761 0.94708 0.95698 1.21401 0.92407 1.03835 1.05159 1.19206 0.88147 0.91043 0.91890 1.86189 1.33374 1.46669 1.56529 1.23321 1.01033 0.87092 0.89415 1.19125 0.91696 0.94483 0.95934 1.20969 0.93172 1.17069 1.25203 0.92390 1.24998 0.94821 0.97513 0.96913 1.69984 1.00720 1.39385 1.42637 0.86485 0.78508 0.81787 0.80581 1.20496 1.21054 1.19785 1.20318 1.00354 0.96276 0.98226 1.23273 0.91663 0.76772 0.77016 1.90793 1.64998 1.41257 1.39118 1.84481 1.29005 1.58643 1.61460 0.76350 0.87308 0.87792 0.81845 0.93940 0.89689 0.86813 0.86224 0.85256 0.93179 0.93164 0.95359 0.95384 0.92715 0.85119 0.72881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 19.25 29.55 0.57 -0.57 16 2 C -0.20 -1.39 12.20 -37.12 -0.45 -1.84 16 3 C -0.01 -0.05 5.28 -29.52 -0.16 -0.21 16 4 C 0.11 0.81 2.53 -68.87 -0.17 0.64 16 5 H 0.09 0.56 7.80 -51.93 -0.40 0.15 16 6 N -0.66 -6.61 5.83 -109.22 -0.64 -7.25 16 7 C 0.10 1.09 5.50 -4.98 -0.03 1.07 16 8 C -0.05 -0.70 5.39 -104.65 -0.56 -1.27 16 9 C -0.17 -2.00 9.70 -39.56 -0.38 -2.39 16 10 C -0.08 -1.08 10.04 -39.60 -0.40 -1.47 16 11 C -0.21 -3.36 9.04 -39.43 -0.36 -3.72 16 12 C 0.14 2.64 6.69 -39.22 -0.26 2.38 16 13 O -0.31 -6.81 10.14 -19.43 -0.20 -7.01 16 14 C 0.07 1.45 4.68 37.16 0.17 1.62 16 15 C 0.02 0.67 5.34 -27.89 -0.15 0.52 16 16 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.13 -2.18 9.64 -39.43 -0.38 -2.56 16 25 C 0.47 4.34 7.51 36.01 0.27 4.61 16 26 O -0.48 -6.46 16.68 -18.75 -0.31 -6.77 16 27 O -0.52 -3.18 13.23 -39.26 -0.52 -3.70 16 28 H 0.22 0.69 7.80 -54.10 -0.42 0.27 16 29 H 0.11 0.50 7.99 -51.93 -0.42 0.08 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.36 3.34 7.36 -39.29 -0.29 3.05 16 32 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 33 H 0.08 0.98 7.57 -51.93 -0.39 0.59 16 34 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 2.04 6.30 -52.48 -0.33 1.71 16 37 H 0.05 1.05 7.67 -51.93 -0.40 0.65 16 38 H 0.05 1.06 7.65 -51.93 -0.40 0.66 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.41 1.06 9.10 45.56 0.41 1.48 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -34.71 379.27 -8.07 -42.77 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.13 Total: 2.65 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -2.70 Total: -16.79 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.10 Total: -33.39 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -1.03 Total: -17.48 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.71 -8.07 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602693947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.443 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds