Wall clock time and date at job start Tue Mar 31 2020 12:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47076 * 74.17013 * 3 2 1 5 5 H 1.08995 * 109.46875 * 304.99675 * 4 3 2 6 6 N 1.46900 * 109.47196 * 64.99790 * 4 3 2 7 7 C 1.46896 * 111.00195 * 204.99701 * 6 4 3 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 4 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.50699 * 109.46859 * 184.99887 * 4 3 2 26 26 O 1.20828 * 119.99931 * 239.99808 * 25 4 3 27 27 O 1.34229 * 120.00282 * 59.99950 * 25 4 3 28 28 H 4.44647 * 5.63343 * 179.97438 * 4 1 2 29 29 H 1.08994 * 109.47203 * 314.16906 * 3 2 1 30 30 H 1.09005 * 109.46790 * 194.17176 * 3 2 1 31 31 H 1.00901 * 111.00271 * 328.95420 * 6 4 3 32 32 H 1.09005 * 109.46944 * 59.99947 * 7 6 4 33 33 H 1.09002 * 109.47398 * 300.00389 * 7 6 4 34 34 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 36 36 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 37 37 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 38 38 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 39 39 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 40 40 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 41 41 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 43 43 H 0.96697 * 117.00101 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.3926 -1.3878 5 1 2.7220 -1.3497 -1.6767 6 7 2.7671 0.6357 -2.3621 7 6 2.6886 0.0741 -3.7172 8 6 2.2871 1.1557 -4.6867 9 6 0.9494 1.3833 -4.9527 10 6 0.5778 2.3752 -5.8412 11 6 1.5427 3.1447 -6.4622 12 6 2.8855 2.9149 -6.2011 13 8 3.8366 3.6674 -6.8143 14 6 3.3825 4.6743 -7.7209 15 6 4.5871 5.4126 -8.3081 16 6 4.1082 6.4749 -9.2637 17 1 3.0504 6.6102 -9.4348 18 6 5.0203 7.2748 -9.9189 19 7 6.3084 7.1103 -9.7102 20 14 4.4267 8.5911 -11.1040 21 1 4.2157 9.8626 -10.3662 22 1 5.4449 8.7975 -12.1650 23 1 3.1475 8.1597 -11.7226 24 6 3.2558 1.9192 -5.3086 25 6 4.6581 -0.5115 -1.3557 26 8 5.3350 0.1885 -2.0711 27 8 5.2441 -1.3951 -0.5324 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0097 -0.7152 0.7371 30 1 3.0089 0.9973 0.2516 31 1 1.8953 1.0708 -2.0999 32 1 1.9471 -0.7247 -3.7371 33 1 3.6617 -0.3264 -4.0015 34 1 0.1934 0.7858 -4.4648 35 1 -0.4676 2.5513 -6.0470 36 1 1.2519 3.9222 -7.1532 37 1 2.8136 4.2088 -8.5257 38 1 2.7470 5.3823 -7.1889 39 1 5.1557 5.8782 -7.5031 40 1 5.2231 4.7050 -8.8400 41 1 6.9501 7.6733 -10.1708 42 1 4.3004 1.7409 -5.1005 43 1 6.2101 -1.4354 -0.5474 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602693947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:55 Heat of formation + Delta-G solvation = -79.703587 kcal Electronic energy + Delta-G solvation = -24829.604991 eV Core-core repulsion = 21033.395970 eV Total energy + Delta-G solvation = -3796.209021 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.41653 -41.03238 -38.99126 -37.72986 -36.93833 -35.50414 -34.70406 -32.64012 -32.55687 -30.84421 -30.14063 -27.13425 -26.48229 -25.83382 -23.58214 -23.29340 -21.88776 -21.59561 -19.28148 -19.08562 -18.95747 -18.16299 -17.70915 -17.00870 -16.97906 -16.88080 -16.80389 -16.44164 -16.38397 -15.97852 -15.00502 -14.87777 -14.62369 -14.39791 -14.34531 -14.15605 -13.97474 -13.74625 -13.68672 -13.08329 -12.99508 -12.84431 -12.60958 -12.56239 -12.43904 -12.41600 -11.89721 -11.62992 -11.61146 -11.57262 -11.38977 -11.17982 -11.06116 -10.63729 -9.86494 -9.58357 -9.10865 -8.27776 -6.42145 0.31391 0.52596 1.19771 1.39796 1.42771 1.53920 1.82311 1.93026 2.04308 2.26478 2.50470 2.72247 3.06354 3.21468 3.49627 3.76206 3.84927 3.91038 4.01742 4.12964 4.21043 4.24735 4.28048 4.37677 4.41377 4.50479 4.60658 4.68007 4.71296 4.78294 4.84337 5.08651 5.17596 5.29611 5.43227 5.43885 5.51188 5.58544 5.64048 5.67130 5.73517 5.92606 6.05885 6.24113 6.57266 6.70677 6.72706 7.06858 7.28082 8.85626 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002218 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.543435 B =12622.296968 C =13592.470421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.227 4.227 3 C -0.002 4.002 4 C 0.109 3.891 5 H 0.109 0.891 6 N -0.680 5.680 7 C 0.109 3.891 8 C -0.047 4.047 9 C -0.147 4.147 10 C -0.075 4.075 11 C -0.219 4.219 12 C 0.104 3.896 13 O -0.346 6.346 14 C 0.086 3.914 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.258 1.258 24 C -0.152 4.152 25 C 0.480 3.520 26 O -0.532 6.532 27 O -0.511 6.511 28 H 0.244 0.756 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.364 0.636 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.128 0.872 37 H 0.061 0.939 38 H 0.060 0.940 39 H -0.005 1.005 40 H -0.003 1.003 41 H 0.267 0.733 42 H 0.109 0.891 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 -20.599 21.415 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.227 4.227 3 C -0.039 4.039 4 C -0.002 4.002 5 H 0.126 0.874 6 N -0.316 5.316 7 C -0.019 4.019 8 C -0.048 4.048 9 C -0.165 4.165 10 C -0.093 4.093 11 C -0.238 4.238 12 C 0.059 3.941 13 O -0.261 6.261 14 C 0.011 3.989 15 C -0.010 4.010 16 C -0.583 4.583 17 H 0.090 0.910 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.802 3.198 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.171 4.171 25 C 0.321 3.679 26 O -0.420 6.420 27 O -0.325 6.325 28 H 0.260 0.740 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -13.842 -20.109 21.123 32.282 hybrid contribution 0.324 0.582 -0.875 1.099 sum -13.518 -19.527 20.248 31.210 Atomic orbital electron populations 1.25697 0.96757 0.99371 0.97753 1.22960 0.94560 1.02166 1.03024 1.18720 0.85570 1.05012 0.94556 1.20964 0.87467 0.97495 0.94318 0.87390 1.59827 1.39862 1.31216 1.00731 1.20883 1.01434 0.93405 0.86201 1.19572 0.92874 0.96186 0.96138 1.21226 0.95011 0.99950 1.00346 1.21251 0.99807 0.93685 0.94579 1.21523 0.91854 1.04645 1.05819 1.19522 0.88777 0.92201 0.93642 1.86095 1.35286 1.47381 1.57309 1.22854 0.98475 0.87478 0.90057 1.18974 0.92975 0.94208 0.94830 1.21389 0.94028 1.17435 1.25474 0.90960 1.26102 0.94804 1.00148 0.98871 1.70139 1.02308 1.40754 1.43956 0.85239 0.78428 0.78300 0.77810 1.19472 1.20620 1.18158 1.20374 1.00362 0.97198 0.99184 1.23643 0.92308 0.75911 0.76027 1.90790 1.66252 1.43499 1.41428 1.84447 1.30532 1.57304 1.60174 0.73978 0.85673 0.88536 0.81307 0.90705 0.91393 0.82538 0.82628 0.85401 0.92067 0.92197 0.98609 0.98488 0.92424 0.87288 0.71069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 19.25 74.32 1.43 -0.20 16 2 C -0.23 -2.58 12.20 31.13 0.38 -2.20 16 3 C 0.00 -0.02 5.28 28.79 0.15 0.13 16 4 C 0.11 1.49 2.53 44.17 0.11 1.60 16 5 H 0.11 1.06 7.80 -2.39 -0.02 1.04 16 6 N -0.68 -12.67 5.83 -499.48 -2.91 -15.58 16 7 C 0.11 2.13 5.50 85.56 0.47 2.60 16 8 C -0.05 -1.19 5.39 -19.88 -0.11 -1.29 16 9 C -0.15 -3.01 9.70 22.28 0.22 -2.79 16 10 C -0.08 -1.75 10.04 22.26 0.22 -1.52 16 11 C -0.22 -6.93 9.04 22.36 0.20 -6.73 16 12 C 0.10 3.97 6.69 22.50 0.15 4.12 16 13 O -0.35 -16.06 10.14 -92.43 -0.94 -17.00 16 14 C 0.09 3.97 4.68 71.98 0.34 4.31 16 15 C 0.03 1.57 5.34 29.85 0.16 1.73 16 16 C -0.55 -31.69 9.11 25.60 0.23 -31.45 16 17 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 19 N -0.93 -58.30 13.29 21.45 0.28 -58.01 16 20 Si 0.98 44.34 29.54 68.60 2.03 46.37 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 C -0.15 -5.21 9.64 22.37 0.22 -5.00 16 25 C 0.48 8.55 7.51 71.24 0.53 9.09 16 26 O -0.53 -14.94 16.68 21.96 0.37 -14.58 16 27 O -0.51 -5.52 13.23 -51.41 -0.68 -6.20 16 28 H 0.24 0.61 7.80 -4.42 -0.03 0.57 16 29 H 0.13 0.86 7.99 -2.39 -0.02 0.84 16 30 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.36 5.99 7.36 -89.69 -0.66 5.33 16 32 H 0.08 0.99 8.00 -2.38 -0.02 0.97 16 33 H 0.07 1.58 7.57 -2.39 -0.02 1.56 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.16 2.51 8.06 -2.92 -0.02 2.48 16 36 H 0.13 3.98 6.30 -2.91 -0.02 3.96 16 37 H 0.06 2.65 7.67 -2.39 -0.02 2.63 16 38 H 0.06 2.61 7.65 -2.39 -0.02 2.59 16 39 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.43 1.78 9.10 -74.06 -0.67 1.10 16 Total: -1.00 -79.92 379.27 3.02 -76.89 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -0.30 Total: 15.31 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 5.17 Total: -27.20 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.63 Total: -73.59 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.25 Total: -37.78 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -79.92 3.02 -76.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602693947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.809 kcal (2) G-P(sol) polarization free energy of solvation -79.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds