Wall clock time and date at job start Tue Mar 31 2020 12:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.96880 * 2 1 4 4 C 1.51454 * 109.98092 * 238.68791 * 2 1 3 5 5 O 1.20760 * 126.34066 * 61.03528 * 4 2 1 6 6 C 1.51837 * 107.31521 * 241.00820 * 4 2 1 7 7 C 1.55060 * 104.52922 * 336.31575 * 6 4 2 8 8 C 1.54277 * 109.98186 * 121.27046 * 2 1 3 9 9 H 1.09001 * 110.56995 * 23.76358 * 8 2 1 10 10 C 1.52989 * 110.57192 * 261.03644 * 8 2 1 11 11 C 1.50701 * 109.47580 * 177.05586 * 10 8 2 12 12 O 1.21290 * 119.99239 * 0.02562 * 11 10 8 13 13 N 1.34773 * 120.00657 * 179.97438 * 11 10 8 14 14 C 1.39914 * 120.00444 * 184.50950 * 13 11 10 15 15 C 1.38965 * 120.03514 * 324.90281 * 14 13 11 16 16 C 1.38161 * 120.06622 * 179.97438 * 15 14 13 17 17 C 1.38158 * 120.13962 * 359.97438 * 16 15 14 18 18 C 1.38911 * 120.07364 * 359.71873 * 17 16 15 19 19 O 1.35746 * 120.03908 * 180.27810 * 18 17 16 20 20 C 1.34834 * 117.00337 * 185.64023 * 19 18 17 21 21 H 1.07996 * 119.99413 * 354.96453 * 20 19 18 22 22 C 1.38650 * 120.00128 * 174.96636 * 20 19 18 23 23 N 1.31565 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00110 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47342 * 59.99483 * 24 22 20 26 26 H 1.48500 * 109.47346 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46861 * 300.00082 * 24 22 20 28 28 C 1.38710 * 120.03899 * 144.87986 * 14 13 11 29 29 H 1.08997 * 109.46835 * 298.72912 * 1 2 3 30 30 H 1.09000 * 109.47181 * 58.72802 * 1 2 3 31 31 H 1.09001 * 109.47176 * 178.72710 * 1 2 3 32 32 H 1.09004 * 110.43894 * 94.95003 * 6 4 2 33 33 H 1.08994 * 110.44248 * 217.35140 * 6 4 2 34 34 H 1.08994 * 110.76776 * 279.28772 * 7 6 4 35 35 H 1.09001 * 110.96581 * 155.65633 * 7 6 4 36 36 H 1.09000 * 109.47271 * 57.05249 * 10 8 2 37 37 H 1.09006 * 109.47196 * 297.05785 * 10 8 2 38 38 H 0.97001 * 119.99218 * 4.51562 * 13 11 10 39 39 H 1.07996 * 119.96809 * 359.97438 * 15 14 13 40 40 H 1.08006 * 119.92541 * 180.02562 * 16 15 14 41 41 H 1.08003 * 119.96805 * 180.02562 * 17 16 15 42 42 H 0.96997 * 119.99962 * 179.97438 * 23 22 20 43 43 H 1.08006 * 120.06668 * 0.02655 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9023 1.0244 0.0000 4 6 2.0476 -0.7397 -1.2161 5 8 1.8494 -0.4458 -2.3705 6 6 2.8623 -1.9189 -0.7149 7 6 3.3046 -1.5073 0.7132 8 6 2.0573 -0.7526 1.2393 9 1 1.3104 -1.4566 1.6062 10 6 2.4507 0.2340 2.3403 11 6 2.8931 -0.5278 3.5630 12 8 2.8941 -1.7406 3.5543 13 7 3.2887 0.1385 4.6658 14 6 3.7884 -0.5653 5.7669 15 6 3.2667 -1.8120 6.0906 16 6 3.7601 -2.5078 7.1775 17 6 4.7734 -1.9672 7.9454 18 6 5.3035 -0.7243 7.6233 19 8 6.3030 -0.1963 8.3749 20 6 6.6919 1.0607 8.0805 21 1 6.2700 1.5704 7.2270 22 6 7.6334 1.6988 8.8735 23 7 8.1469 1.0779 9.9135 24 14 8.1716 3.4405 8.4660 25 1 6.9947 4.3450 8.5082 26 1 9.1787 3.8926 9.4593 27 1 8.7690 3.4687 7.1066 28 6 4.8054 -0.0197 6.5364 29 1 -0.3633 0.4940 0.9012 30 1 -0.3633 0.5335 -0.8783 31 1 -0.3633 -1.0274 -0.0228 32 1 2.2469 -2.8177 -0.6759 33 1 3.7307 -2.0805 -1.3534 34 1 4.1700 -0.8458 0.6741 35 1 3.5134 -2.3849 1.3250 36 1 1.5935 0.8586 2.5918 37 1 3.2683 0.8636 1.9889 38 1 3.2268 1.1061 4.6960 39 1 2.4749 -2.2374 5.4920 40 1 3.3532 -3.4768 7.4267 41 1 5.1573 -2.5137 8.7942 42 1 8.8059 1.5242 10.4680 43 1 5.2125 0.9491 6.2869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279995708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:01 Heat of formation + Delta-G solvation = -87.118521 kcal Electronic energy + Delta-G solvation = -25562.149408 eV Core-core repulsion = 21765.618851 eV Total energy + Delta-G solvation = -3796.530557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.70132 -39.91917 -38.71161 -37.12180 -36.26462 -34.26564 -32.28454 -31.86928 -31.23780 -29.32082 -28.48566 -25.56712 -25.19193 -24.92941 -22.25098 -21.83745 -20.85726 -19.99275 -19.39654 -18.00635 -17.81763 -16.92273 -16.29674 -16.06346 -15.64081 -15.39018 -15.02717 -14.76413 -14.41022 -14.32555 -14.04843 -13.98786 -13.67917 -13.60796 -13.17346 -12.92483 -12.86765 -12.54874 -12.44058 -12.10358 -11.77516 -11.69824 -11.55851 -11.34216 -11.19961 -11.02176 -10.98989 -10.93606 -10.82512 -10.49949 -9.92232 -9.73046 -9.55536 -9.37945 -8.83675 -7.77759 -7.19736 -6.47774 -4.07967 1.60394 1.93378 2.34809 2.77380 3.08996 3.10054 3.13351 3.18383 3.75280 3.92811 4.10530 4.29760 4.39307 4.55250 4.76606 4.78813 4.83014 4.95063 5.05592 5.07367 5.09474 5.20519 5.25554 5.31963 5.42013 5.55142 5.56116 5.63545 5.69149 5.75420 5.93913 5.97363 6.04922 6.05394 6.21593 6.25225 6.60894 6.93299 6.96021 7.08653 7.16489 7.28251 7.39151 7.65610 7.78113 7.96096 8.26686 8.97316 9.67605 10.70161 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.002639 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.671028 B =10605.698847 C =11569.595235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.152 4.152 3 H 0.104 0.896 4 C 0.374 3.626 5 O -0.448 6.448 6 C -0.184 4.184 7 C -0.115 4.115 8 C -0.068 4.068 9 H 0.095 0.905 10 C -0.134 4.134 11 C 0.510 3.490 12 O -0.518 6.518 13 N -0.671 5.671 14 C 0.177 3.823 15 C -0.205 4.205 16 C -0.065 4.065 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.176 6.176 20 C -0.393 4.393 21 H 0.090 0.910 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.257 4.257 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.406 0.594 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 -0.463 -16.360 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 H 0.122 0.878 4 C 0.249 3.751 5 O -0.321 6.321 6 C -0.222 4.222 7 C -0.152 4.152 8 C -0.087 4.087 9 H 0.113 0.887 10 C -0.174 4.174 11 C 0.297 3.703 12 O -0.393 6.393 13 N -0.315 5.315 14 C 0.084 3.916 15 C -0.226 4.226 16 C -0.084 4.084 17 C -0.219 4.219 18 C 0.113 3.887 19 O -0.079 6.079 20 C -0.470 4.470 21 H 0.107 0.893 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.278 4.278 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.241 0.759 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.636 -1.198 -16.657 20.941 hybrid contribution 0.375 1.526 -0.074 1.573 sum -12.260 0.328 -16.730 20.744 Atomic orbital electron populations 1.21688 0.92367 1.02673 1.02818 1.22378 0.98138 1.01543 0.95051 0.87757 1.25017 0.76054 0.85121 0.88899 1.90410 1.51885 1.67938 1.21839 1.22968 1.01460 0.98959 0.98772 1.22586 0.96923 1.01855 0.93852 1.21741 0.98573 0.96291 0.92096 0.88653 1.21752 1.03296 0.99051 0.93348 1.20658 0.77195 0.88527 0.83876 1.90694 1.52049 1.13753 1.82839 1.43515 1.63245 1.10550 1.14180 1.17424 0.93860 0.93089 0.87247 1.20672 1.05048 0.96221 1.00614 1.20562 0.95517 0.98372 0.93981 1.20273 1.01686 0.96279 1.03683 1.19076 0.87636 0.92286 0.89728 1.84007 1.42941 1.29878 1.51124 1.21219 1.24206 0.88229 1.13311 0.89302 1.25274 0.96173 0.99855 0.95148 1.70027 1.27120 1.37522 1.15030 0.85800 0.78736 0.80487 0.78496 1.19544 1.20254 1.19556 1.20823 1.01852 1.04022 1.01113 0.91304 0.91959 0.92132 0.87732 0.89039 0.91016 0.88724 0.88462 0.88431 0.75892 0.85834 0.86665 0.86424 0.91940 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.08 37.16 0.34 -0.53 16 2 C -0.15 -1.05 3.01 -90.73 -0.27 -1.33 16 3 H 0.10 0.63 7.83 -51.93 -0.41 0.22 16 4 C 0.37 3.37 7.18 -28.10 -0.20 3.17 16 5 O -0.45 -5.55 17.99 6.00 0.11 -5.45 16 6 C -0.18 -1.40 6.72 -26.23 -0.18 -1.57 16 7 C -0.11 -0.96 5.74 -24.59 -0.14 -1.10 16 8 C -0.07 -0.52 2.01 -88.91 -0.18 -0.69 16 9 H 0.10 0.79 7.67 -51.93 -0.40 0.39 16 10 C -0.13 -1.01 5.06 -27.89 -0.14 -1.15 16 11 C 0.51 6.25 7.47 -10.99 -0.08 6.17 16 12 O -0.52 -7.99 12.10 5.55 0.07 -7.92 16 13 N -0.67 -8.99 5.33 -9.88 -0.05 -9.04 16 14 C 0.18 3.19 6.29 -83.72 -0.53 2.66 16 15 C -0.20 -3.74 8.69 -39.34 -0.34 -4.09 16 16 C -0.07 -1.20 10.03 -39.64 -0.40 -1.60 16 17 C -0.20 -4.19 9.99 -39.36 -0.39 -4.59 16 18 C 0.17 3.96 6.65 -39.13 -0.26 3.70 16 19 O -0.18 -4.93 9.76 0.05 0.00 -4.92 16 20 C -0.39 -10.69 9.49 30.88 0.29 -10.39 16 21 H 0.09 2.20 5.20 -52.49 -0.27 1.93 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 24 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 28 C -0.26 -5.34 9.08 -39.21 -0.36 -5.70 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.58 7.99 -51.93 -0.41 0.17 16 35 H 0.09 0.97 7.23 -51.93 -0.38 0.59 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.60 8.06 -51.93 -0.42 0.18 16 38 H 0.41 4.17 8.82 -40.82 -0.36 3.81 16 39 H 0.12 2.18 6.23 -52.49 -0.33 1.86 16 40 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 41 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.13 2.62 5.63 -52.48 -0.30 2.32 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -33.29 359.66 -7.44 -40.74 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.79 Total: 6.48 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.94 Total: -16.06 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.71 Total: -33.16 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.29 -7.44 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279995708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.379 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds