Wall clock time and date at job start Tue Mar 31 2020 11:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48498 * 109.47081 * 269.99717 * 3 2 1 5 5 H 1.48499 * 109.46865 * 30.00029 * 3 2 1 6 6 H 1.48497 * 109.47005 * 149.99986 * 3 2 1 7 7 C 1.37880 * 119.99546 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00105 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99471 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99869 * 269.99822 * 10 9 7 12 12 C 1.52997 * 109.47348 * 269.99673 * 11 10 9 13 13 C 1.52999 * 117.50141 * 243.62089 * 12 11 10 14 14 C 1.53004 * 60.00165 * 252.50808 * 13 12 11 15 15 C 1.34777 * 120.00303 * 89.99547 * 10 9 7 16 16 O 1.21586 * 119.99888 * 0.02562 * 15 10 9 17 17 N 1.34779 * 120.00168 * 180.02562 * 15 10 9 18 18 C 1.39972 * 120.00025 * 175.33265 * 17 15 10 19 19 C 1.38977 * 119.99867 * 214.83798 * 18 17 15 20 20 C 1.38220 * 120.22281 * 179.71984 * 19 18 17 21 21 C 1.38012 * 120.22192 * 0.55478 * 20 19 18 22 22 C 1.39571 * 119.99507 * 359.71842 * 21 20 19 23 23 C 1.47867 * 120.11320 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99918 * 0.02562 * 23 22 21 25 25 O 1.21556 * 120.00185 * 180.02562 * 23 22 21 26 26 C 1.38595 * 120.00213 * 35.10589 * 18 17 15 27 27 H 0.96996 * 120.00019 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47688 * 60.00184 * 9 7 2 29 29 H 1.09001 * 109.47293 * 299.99978 * 9 7 2 30 30 H 1.09007 * 109.47272 * 30.00209 * 11 10 9 31 31 H 1.08998 * 109.47200 * 149.99592 * 11 10 9 32 32 H 1.09003 * 115.54809 * 29.33131 * 12 11 10 33 33 H 1.09000 * 117.49712 * 0.02562 * 13 12 11 34 34 H 1.09001 * 117.49875 * 145.01836 * 13 12 11 35 35 H 1.09000 * 117.50194 * 252.50852 * 14 13 12 36 36 H 1.08999 * 117.49578 * 107.48339 * 14 13 12 37 37 H 0.96996 * 119.99978 * 355.06130 * 17 15 10 38 38 H 1.08005 * 119.89226 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.88753 * 180.26906 * 20 19 18 40 40 H 1.07997 * 120.00598 * 179.69800 * 21 20 19 41 41 H 0.96998 * 119.99631 * 0.02562 * 24 23 22 42 42 H 0.97003 * 119.99742 * 180.02562 * 24 23 22 43 43 H 1.08006 * 120.10555 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.2435 -3.2662 1.2696 12 6 5.6884 -3.0259 1.7119 13 6 6.6117 -4.2427 1.8004 14 6 6.1085 -3.5697 3.0790 15 6 4.2249 -3.2105 -1.1662 16 8 4.0230 -2.6370 -2.2192 17 7 4.6736 -4.4814 -1.1663 18 6 4.8143 -5.1739 -2.3746 19 6 4.5604 -6.5393 -2.4266 20 6 4.6923 -7.2266 -3.6185 21 6 5.0880 -6.5637 -4.7625 22 6 5.3508 -5.1936 -4.7195 23 6 5.7755 -4.4810 -5.9435 24 7 5.9089 -5.1543 -7.1034 25 8 6.0043 -3.2878 -5.9037 26 6 5.2121 -4.4990 -3.5179 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.5624 -2.8822 2.0292 31 1 4.0766 -4.3353 1.1391 32 1 6.1282 -2.0824 1.3888 33 1 6.1900 -5.2143 1.5431 34 1 7.6593 -4.0998 1.5352 35 1 6.8250 -2.9841 3.6551 36 1 5.3555 -4.0986 3.6632 37 1 4.9029 -4.9148 -0.3294 38 1 4.2551 -7.0644 -1.5335 39 1 4.4894 -8.2868 -3.6537 40 1 5.1946 -7.1051 -5.6909 41 1 5.7259 -6.1064 -7.1353 42 1 6.1878 -4.6868 -7.9063 43 1 5.4137 -3.4386 -3.4785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176334249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:54 Heat of formation + Delta-G solvation = 0.904614 kcal Electronic energy + Delta-G solvation = -26372.011345 eV Core-core repulsion = 22611.590509 eV Total energy + Delta-G solvation = -3760.420837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.58028 -39.60335 -38.15659 -37.29295 -34.91757 -34.35391 -33.67213 -32.42341 -31.01410 -29.64410 -28.20213 -26.27510 -24.23185 -23.28206 -22.44286 -21.88962 -20.89183 -20.59554 -19.31023 -18.51574 -17.63438 -17.04925 -16.86845 -16.22042 -16.02333 -15.27132 -15.06555 -14.92013 -14.68776 -14.44378 -14.04306 -13.92069 -13.80063 -13.64138 -13.21369 -12.67987 -12.52034 -12.24642 -12.00112 -11.69396 -11.57653 -11.55653 -11.47181 -10.94337 -10.61260 -10.41397 -10.24575 -10.10967 -10.00691 -9.99432 -9.78861 -9.51963 -9.34759 -8.92642 -8.55978 -8.13886 -7.70380 -6.06225 -4.04971 0.83853 1.39452 2.84387 3.01399 3.32730 3.38194 3.41317 3.43325 3.66843 3.74005 3.98615 4.27832 4.42517 4.71831 4.77803 4.78893 4.88237 5.00117 5.03719 5.17570 5.26274 5.27903 5.44514 5.52620 5.56359 5.68192 5.83477 5.85676 5.93155 6.05174 6.22624 6.25836 6.30233 6.39048 6.50602 6.60052 6.71017 6.88625 7.11074 7.22765 7.24608 7.44738 7.63520 8.22197 8.40513 8.49246 8.96430 9.11728 9.53979 11.07211 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.004304 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.939670 B = 6504.103280 C = 8124.160128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.231 3.769 10 N -0.598 5.598 11 C 0.142 3.858 12 C -0.171 4.171 13 C -0.185 4.185 14 C -0.173 4.173 15 C 0.701 3.299 16 O -0.561 6.561 17 N -0.693 5.693 18 C 0.174 3.826 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.123 4.123 23 C 0.563 3.437 24 N -0.855 5.855 25 O -0.530 6.530 26 C -0.061 4.061 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.403 0.597 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.399 0.601 42 H 0.403 0.597 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.274 -17.759 -2.707 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.110 3.890 10 N -0.331 5.331 11 C 0.017 3.983 12 C -0.190 4.190 13 C -0.222 4.222 14 C -0.211 4.211 15 C 0.403 3.597 16 O -0.436 6.436 17 N -0.343 5.343 18 C 0.078 3.922 19 C -0.151 4.151 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.127 4.127 23 C 0.349 3.651 24 N -0.419 5.419 25 O -0.406 6.406 26 C -0.082 4.082 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.240 0.760 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.228 0.772 42 H 0.234 0.766 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.002 -16.306 -3.180 21.727 hybrid contribution 0.328 0.278 0.152 0.456 sum 14.330 -16.027 -3.028 21.711 Atomic orbital electron populations 1.69897 1.06202 1.26967 1.50520 1.24831 0.94746 0.98898 0.94404 0.86869 0.80142 0.83822 0.78972 1.19821 1.21100 1.19026 1.21331 0.89210 0.94832 1.51402 0.90772 1.19637 0.95552 0.76221 0.97595 1.47163 1.67259 1.16190 1.02494 1.21018 0.93438 0.96202 0.87646 1.23010 0.96738 0.98721 1.00554 1.23039 0.99859 0.96712 1.02636 1.22909 1.03568 1.03959 0.90620 1.15890 0.78355 0.80377 0.85120 1.90941 1.57640 1.65316 1.29684 1.42918 1.69606 1.14178 1.07584 1.17463 0.97430 0.90887 0.86448 1.21082 1.01733 0.93120 0.99116 1.20768 1.00206 0.99830 0.91857 1.21112 1.00705 0.93059 0.98584 1.19709 1.05279 0.93850 0.93880 1.18322 0.76542 0.86616 0.83658 1.43733 1.73112 1.13537 1.11545 1.90864 1.49407 1.14738 1.85560 1.21570 0.94321 1.02216 0.90114 0.92577 0.94906 0.94299 0.88668 0.91843 0.87243 0.89120 0.88969 0.88854 0.88556 0.75995 0.85429 0.85240 0.85946 0.77157 0.76639 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.53 -15.25 9.94 -34.44 -0.34 -15.60 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.23 5.64 4.23 -5.19 -0.02 5.61 16 10 N -0.60 -12.19 2.46 -180.80 -0.44 -12.64 16 11 C 0.14 2.15 5.41 -4.05 -0.02 2.13 16 12 C -0.17 -2.17 6.01 -90.62 -0.54 -2.72 16 13 C -0.19 -1.84 9.85 -26.73 -0.26 -2.10 16 14 C -0.17 -1.73 10.25 -26.73 -0.27 -2.01 16 15 C 0.70 14.73 8.12 -86.92 -0.71 14.02 16 16 O -0.56 -14.35 13.35 5.29 0.07 -14.28 16 17 N -0.69 -11.02 5.17 -14.26 -0.07 -11.09 16 18 C 0.17 2.67 6.29 -83.73 -0.53 2.14 16 19 C -0.13 -1.48 9.96 -39.31 -0.39 -1.87 16 20 C -0.11 -1.04 10.02 -39.67 -0.40 -1.43 16 21 C -0.11 -1.16 9.54 -39.17 -0.37 -1.54 16 22 C -0.12 -1.75 5.87 -104.99 -0.62 -2.36 16 23 C 0.56 8.19 8.05 -12.32 -0.10 8.09 16 24 N -0.85 -7.57 8.82 30.54 0.27 -7.30 16 25 O -0.53 -10.34 17.18 5.32 0.09 -10.25 16 26 C -0.06 -1.05 8.24 -38.98 -0.32 -1.37 16 27 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 28 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 29 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 30 H 0.10 1.52 8.07 -51.92 -0.42 1.10 16 31 H 0.06 0.81 6.17 -51.93 -0.32 0.49 16 32 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.40 5.04 5.93 -40.82 -0.24 4.80 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.76 6.40 -52.49 -0.34 0.42 16 41 H 0.40 2.17 6.86 -40.82 -0.28 1.89 16 42 H 0.40 3.01 8.93 -40.82 -0.36 2.64 16 43 H 0.16 3.32 5.81 -52.48 -0.30 3.02 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -38.20 361.28 -9.05 -47.25 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.52 Total: 9.77 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -5.00 Total: 3.05 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.53 Total: -58.17 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.16 Total: -24.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.20 -9.05 -47.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176334249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.153 kcal (2) G-P(sol) polarization free energy of solvation -38.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds