Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47121 * 270.00100 * 3 2 1 5 5 H 1.48497 * 109.46916 * 29.99970 * 3 2 1 6 6 H 1.48496 * 109.47011 * 150.00046 * 3 2 1 7 7 C 1.37883 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47058 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47100 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54388 * 68.37788 * 11 10 9 13 13 O 1.42097 * 110.54018 * 291.62199 * 11 10 9 14 14 N 1.65605 * 104.44926 * 179.97438 * 11 10 9 15 15 C 1.47428 * 125.65050 * 269.97751 * 14 11 10 16 16 C 1.54901 * 104.83453 * 155.89391 * 15 14 11 17 17 C 1.55154 * 101.58352 * 37.00745 * 16 15 14 18 18 C 1.47024 * 125.65017 * 89.99695 * 14 11 10 19 19 H 1.08994 * 110.01357 * 300.53464 * 18 14 11 20 20 C 1.53007 * 109.87941 * 61.62243 * 18 14 11 21 21 H 1.09006 * 109.57399 * 295.47967 * 20 18 14 22 22 C 1.53171 * 109.52104 * 175.32195 * 20 18 14 23 23 C 1.53185 * 109.03567 * 183.11364 * 22 20 18 24 24 C 1.53093 * 109.16128 * 56.97694 * 23 22 20 25 25 O 1.42897 * 109.41938 * 302.39395 * 24 23 22 26 26 C 1.42909 * 114.09913 * 61.15671 * 25 24 23 27 27 H 0.97000 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47354 * 59.99601 * 9 7 2 29 29 H 1.09001 * 109.46629 * 299.99697 * 9 7 2 30 30 H 1.08997 * 109.47324 * 59.99632 * 10 9 7 31 31 H 1.09008 * 109.47450 * 300.00038 * 10 9 7 32 32 H 1.09001 * 110.36231 * 37.04591 * 15 14 11 33 33 H 1.09001 * 110.45283 * 274.78147 * 15 14 11 34 34 H 1.09005 * 111.00300 * 278.93249 * 16 15 14 35 35 H 1.08993 * 111.04079 * 155.10236 * 16 15 14 36 36 H 1.09008 * 110.71978 * 206.14146 * 17 16 15 37 37 H 1.08996 * 110.87267 * 82.93567 * 17 16 15 38 38 H 1.09002 * 109.54742 * 63.24569 * 22 20 18 39 39 H 1.09003 * 109.54519 * 302.97720 * 22 20 18 40 40 H 1.08995 * 109.52377 * 176.88175 * 23 22 20 41 41 H 1.08997 * 109.52182 * 297.07508 * 23 22 20 42 42 H 1.09002 * 109.47962 * 62.37827 * 24 23 22 43 43 H 1.09003 * 109.47605 * 182.40584 * 24 23 22 44 44 H 1.08997 * 109.47529 * 58.82448 * 26 25 24 45 45 H 1.08998 * 109.48124 * 178.86310 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2330 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5204 -6.3927 0.0005 15 6 3.1326 -6.9949 -1.1979 16 6 4.5192 -7.4978 -0.7247 17 6 4.1966 -7.9991 0.7077 18 6 3.1330 -6.9927 1.1948 19 1 3.6046 -6.2191 1.8007 20 6 2.0668 -7.7195 2.0171 21 1 1.3410 -6.9984 2.3930 22 6 2.7311 -8.4388 3.1950 23 6 1.6659 -9.2256 3.9650 24 6 0.9698 -10.1974 3.0085 25 8 0.4003 -9.4670 1.9204 26 6 1.3553 -8.7495 1.1358 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6241 -2.5566 0.8903 30 1 2.8719 -3.6043 0.8904 31 1 2.8719 -3.6044 -0.8895 32 1 3.2476 -6.2463 -1.9818 33 1 2.5286 -7.8286 -1.5561 34 1 5.2427 -6.6828 -0.6998 35 1 4.8749 -8.3139 -1.3535 36 1 5.0839 -7.9584 1.3395 37 1 3.7887 -9.0096 0.6828 38 1 3.1923 -7.7057 3.8568 39 1 3.4919 -9.1243 2.8216 40 1 2.1387 -9.7850 4.7722 41 1 0.9321 -8.5349 4.3802 42 1 1.6969 -10.9132 2.6248 43 1 0.1817 -10.7297 3.5412 44 1 2.0873 -9.4464 0.7277 45 1 0.8448 -8.2387 0.3194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563060310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = -131.555007 kcal Electronic energy + Delta-G solvation = -26333.167325 eV Core-core repulsion = 22670.153809 eV Total energy + Delta-G solvation = -3663.013516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17563 -38.03442 -36.62380 -35.43215 -33.89898 -33.86599 -31.66920 -31.15637 -30.98167 -27.87122 -25.62172 -25.09257 -23.83987 -22.11714 -21.81759 -21.27447 -19.59225 -18.40282 -17.53478 -16.89590 -16.44153 -16.02690 -15.73226 -15.33121 -15.15918 -14.79514 -14.59399 -14.50229 -14.03152 -13.81603 -13.56375 -13.26894 -12.75437 -12.60418 -12.53916 -12.45554 -12.16328 -11.75982 -11.61353 -11.56312 -11.45727 -11.38574 -11.17800 -11.08911 -10.97381 -10.95670 -10.72856 -10.66126 -10.43038 -10.38793 -10.13733 -9.76621 -9.46263 -9.30197 -8.73648 -8.50975 -6.12908 -4.18685 0.73008 3.02780 3.25453 3.31624 3.34361 3.83161 4.27456 4.28279 4.34669 4.40964 4.61391 4.70472 4.75408 4.82281 4.82394 4.95258 5.09927 5.18091 5.22127 5.25557 5.32832 5.41848 5.47962 5.56218 5.58505 5.63053 5.66383 5.67710 5.72825 5.77651 5.81144 5.90775 5.99457 6.02924 6.06974 6.24512 6.48108 6.50222 6.53568 7.18117 7.29092 7.35154 7.79850 8.16881 8.84615 9.46051 10.98127 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019973 B = 0.003632 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.579189 B = 7708.009512 C = 8063.286615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.590 4.590 11 S 2.601 3.399 12 O -0.961 6.961 13 O -0.955 6.955 14 N -1.015 6.015 15 C 0.121 3.879 16 C -0.131 4.131 17 C -0.128 4.128 18 C 0.161 3.839 19 H 0.078 0.922 20 C -0.156 4.156 21 H 0.118 0.882 22 C -0.114 4.114 23 C -0.156 4.156 24 C 0.059 3.941 25 O -0.380 6.380 26 C 0.074 3.926 27 H 0.265 0.735 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -20.539 3.612 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.701 3.299 12 O -0.952 6.952 13 O -0.945 6.945 14 N -0.851 5.851 15 C -0.004 4.004 16 C -0.170 4.170 17 C -0.167 4.167 18 C 0.054 3.946 19 H 0.096 0.904 20 C -0.176 4.176 21 H 0.136 0.864 22 C -0.152 4.152 23 C -0.194 4.194 24 C -0.018 4.018 25 O -0.299 6.299 26 C -0.003 4.003 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.910 -20.564 3.556 22.692 hybrid contribution 1.367 1.364 0.066 1.932 sum 10.277 -19.201 3.622 22.077 Atomic orbital electron populations 1.69957 1.06117 1.27215 1.49504 1.25073 0.94975 0.99539 0.94887 0.86467 0.79706 0.82853 0.78248 1.20446 1.20967 1.19766 1.20995 0.93034 0.89755 1.52219 0.92078 1.18961 0.92703 0.90589 0.98843 1.30493 1.13726 1.18157 1.09907 1.05466 0.74313 0.75945 0.74218 1.93543 1.70899 1.85227 1.45504 1.93512 1.71024 1.84929 1.45043 1.59021 1.58664 1.55360 1.12071 1.21926 0.93105 0.98144 0.87246 1.22795 0.96810 1.01209 0.96212 1.22791 0.98188 0.99042 0.96685 1.21222 0.92487 0.94918 0.85928 0.90407 1.22547 0.99192 0.99571 0.96248 0.86374 1.21604 0.97567 0.99188 0.96806 1.22186 0.99149 0.99475 0.98611 1.22556 0.97971 0.93151 0.88079 1.87979 1.34025 1.65108 1.42758 1.22569 0.91772 0.92826 0.93132 0.92504 0.94927 0.94825 0.86360 0.86391 0.90571 0.91523 0.90462 0.90223 0.90287 0.90376 0.91192 0.91755 0.91057 0.90692 0.93593 0.89189 0.93238 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 10 C -0.59 -11.50 6.12 37.15 0.23 -11.27 16 11 S 2.60 47.76 5.64 -107.50 -0.61 47.16 16 12 O -0.96 -20.39 17.60 -57.54 -1.01 -21.40 16 13 O -0.95 -19.62 15.06 -57.54 -0.87 -20.49 16 14 N -1.02 -13.71 2.46 -104.42 -0.26 -13.97 16 15 C 0.12 1.32 6.89 -2.53 -0.02 1.30 16 16 C -0.13 -1.03 7.08 -24.59 -0.17 -1.21 16 17 C -0.13 -1.03 5.11 -24.90 -0.13 -1.16 16 18 C 0.16 1.82 2.92 -66.95 -0.20 1.62 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.16 -1.95 1.95 -90.48 -0.18 -2.12 16 21 H 0.12 1.89 5.82 -51.93 -0.30 1.59 16 22 C -0.11 -1.08 5.09 -26.55 -0.14 -1.22 16 23 C -0.16 -1.47 6.14 -26.59 -0.16 -1.63 16 24 C 0.06 0.60 6.84 37.21 0.25 0.85 16 25 O -0.38 -5.34 10.77 -35.23 -0.38 -5.72 16 26 C 0.07 0.96 5.70 37.21 0.21 1.17 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.08 0.59 5.46 -51.93 -0.28 0.30 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.50 6.80 -51.93 -0.35 0.14 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.53 6.14 -51.93 -0.32 0.21 16 45 H 0.09 1.32 7.60 -51.93 -0.39 0.92 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -34.66 359.05 -10.37 -45.04 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.54 Total: -0.03 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -0.84 Total: -26.34 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.48 Total: -39.86 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.26 Total: -47.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.76 SS G_CDS: -0.61 Total: 47.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.66 -10.37 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563060310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.516 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds