Wall clock time and date at job start Tue Mar 31 2020 11:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99632 * 2 1 4 4 H 1.48504 * 109.46797 * 269.99828 * 3 2 1 5 5 H 1.48502 * 109.47512 * 29.99661 * 3 2 1 6 6 H 1.48498 * 109.47221 * 149.99868 * 3 2 1 7 7 C 1.38806 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99989 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99978 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00019 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.91317 * 322.55156 * 10 9 7 12 12 C 1.55155 * 111.00389 * 198.65469 * 10 9 7 13 13 C 1.54321 * 102.94016 * 206.42385 * 12 10 9 14 14 N 1.47022 * 107.27103 * 22.18825 * 13 12 10 15 15 C 1.34779 * 125.64520 * 181.03855 * 14 13 12 16 16 O 1.21517 * 119.99723 * 174.48738 * 15 14 13 17 17 C 1.48164 * 120.00259 * 354.48042 * 15 14 13 18 18 C 1.39612 * 120.88775 * 6.83538 * 17 15 14 19 19 C 1.38856 * 118.94367 * 179.97438 * 18 17 15 20 20 O 1.35683 * 119.62216 * 180.02562 * 19 18 17 21 21 N 1.32202 * 120.75585 * 359.97438 * 19 18 17 22 22 C 1.31878 * 121.97421 * 0.02562 * 21 19 18 23 23 C 1.50701 * 119.51384 * 180.02562 * 22 21 19 24 24 C 1.53002 * 117.50036 * 163.73719 * 23 22 21 25 25 C 1.53003 * 117.49856 * 95.08086 * 23 22 21 26 26 C 1.38025 * 120.97320 * 359.72616 * 22 21 19 27 27 C 1.47422 * 108.70305 * 1.06281 * 14 13 12 28 28 H 0.97000 * 120.00434 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99777 * 0.02562 * 9 7 2 30 30 H 1.09001 * 110.72245 * 88.06104 * 12 10 9 31 31 H 1.09007 * 110.71662 * 324.78244 * 12 10 9 32 32 H 1.09001 * 109.88460 * 262.77189 * 13 12 10 33 33 H 1.09000 * 109.88375 * 141.60702 * 13 12 10 34 34 H 1.07994 * 120.52753 * 359.95526 * 18 17 15 35 35 H 0.96701 * 113.99582 * 89.99738 * 20 19 18 36 36 H 1.08994 * 115.54922 * 309.41690 * 23 22 21 37 37 H 1.09000 * 117.49768 * 0.02562 * 24 23 22 38 38 H 1.09000 * 117.49387 * 145.01997 * 24 23 22 39 39 H 1.09001 * 117.49777 * 214.97996 * 25 23 22 40 40 H 1.09004 * 117.49672 * 0.02562 * 25 23 22 41 41 H 1.08002 * 120.43504 * 180.29063 * 26 22 21 42 42 H 1.08997 * 110.36582 * 94.71384 * 27 14 13 43 43 H 1.09006 * 110.36341 * 217.03044 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.6070 -3.2117 0.6195 12 6 5.5790 -2.2660 0.4627 13 6 6.3234 -3.4311 -0.2227 14 7 5.5077 -3.8555 -1.3699 15 6 5.8044 -4.8628 -2.2148 16 8 5.0076 -5.1922 -3.0711 17 6 7.1022 -5.5684 -2.0998 18 6 7.9705 -5.3034 -1.0391 19 6 9.1763 -5.9885 -0.9705 20 8 10.0303 -5.7421 0.0547 21 7 9.5014 -6.8787 -1.8922 22 6 8.7066 -7.1547 -2.9077 23 6 9.1325 -8.1803 -3.9264 24 6 8.0543 -8.7454 -4.8533 25 6 8.6353 -9.6146 -3.7353 26 6 7.4877 -6.5225 -3.0479 27 6 4.3118 -2.9966 -1.4433 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3619 -0.0004 30 1 5.6557 -2.3441 1.5472 31 1 5.9623 -1.3063 0.1159 32 1 6.4392 -4.2594 0.4764 33 1 7.3012 -3.0947 -0.5673 34 1 7.7086 -4.5769 -0.2841 35 1 9.8898 -6.3059 0.8277 36 1 10.1316 -8.0449 -4.3404 37 1 7.0370 -8.3751 -4.7265 38 1 8.3443 -8.9821 -5.8770 39 1 9.3073 -10.4228 -4.0240 40 1 7.9999 -9.8163 -2.8729 41 1 6.8415 -6.7586 -3.8804 42 1 4.4823 -2.1668 -2.1292 43 1 3.4456 -3.5784 -1.7583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968892966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:41 Heat of formation + Delta-G solvation = 35.141809 kcal Electronic energy + Delta-G solvation = -25920.021797 eV Core-core repulsion = 22161.085597 eV Total energy + Delta-G solvation = -3758.936200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28687 -39.75423 -38.22422 -37.56563 -36.46453 -34.56069 -33.05656 -31.65964 -30.44261 -30.12794 -28.13048 -25.70596 -24.70929 -23.48483 -22.73431 -22.55816 -21.56519 -20.47907 -19.85395 -18.61067 -17.81762 -17.42769 -17.08046 -16.32530 -16.26395 -15.73681 -15.43837 -15.04747 -14.92978 -14.67017 -14.20282 -13.84106 -13.38990 -13.34748 -13.04554 -12.74511 -12.60400 -12.45203 -12.39149 -12.17316 -11.85993 -11.61360 -11.30818 -11.05650 -10.96840 -10.84579 -10.82885 -10.60745 -10.30236 -10.17447 -10.10241 -9.70186 -9.63169 -9.12523 -9.10479 -8.60798 -7.45973 -5.88195 -3.27397 0.40822 0.60209 2.62151 2.82961 3.06446 3.28629 3.28984 3.32087 3.38569 3.66442 3.93907 4.17602 4.45924 4.48061 4.51148 4.54820 4.69680 4.70935 4.75070 4.88998 4.95303 5.06789 5.16386 5.26338 5.28887 5.37637 5.44988 5.47486 5.51251 5.67001 5.68837 5.74638 5.75340 5.79981 5.99649 6.05909 6.11585 6.27035 6.40623 6.64305 7.10362 7.45218 7.54394 7.85053 8.03123 8.29884 9.05877 9.77546 9.94526 11.29279 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.002764 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.742114 B =10128.475926 C =10992.280095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.093 0.907 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.075 0.925 12 C -0.146 4.146 13 C 0.091 3.909 14 N -0.603 5.603 15 C 0.567 3.433 16 O -0.528 6.528 17 C -0.059 4.059 18 C -0.194 4.194 19 C 0.311 3.689 20 O -0.478 6.478 21 N -0.487 5.487 22 C 0.179 3.821 23 C -0.111 4.111 24 C -0.172 4.172 25 C -0.160 4.160 26 C -0.125 4.125 27 C 0.081 3.919 28 H 0.262 0.738 29 H 0.365 0.635 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.401 0.599 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.153 0.847 42 H 0.071 0.929 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.168 -15.659 -2.343 26.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.386 4.386 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.184 4.184 13 C -0.032 4.032 14 N -0.336 5.336 15 C 0.355 3.645 16 O -0.405 6.405 17 C -0.070 4.070 18 C -0.215 4.215 19 C 0.132 3.868 20 O -0.285 6.285 21 N -0.206 5.206 22 C 0.041 3.959 23 C -0.130 4.130 24 C -0.209 4.209 25 C -0.198 4.198 26 C -0.146 4.146 27 C -0.043 4.043 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.195 0.805 35 H 0.259 0.741 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.171 0.829 42 H 0.089 0.911 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.475 -15.866 -3.057 26.875 hybrid contribution -0.180 1.407 0.296 1.449 sum 21.295 -14.459 -2.762 25.887 Atomic orbital electron populations 1.69696 1.05158 1.26093 1.56423 1.24693 0.95240 0.97320 1.01359 0.86565 0.79215 0.84895 0.77896 1.20927 1.21561 1.20218 1.19063 0.80195 0.94963 1.44335 0.88932 1.42639 1.04234 1.01384 1.89396 1.21273 0.89960 0.89940 0.92245 0.90749 1.23020 0.96901 0.97560 1.00948 1.22518 0.94987 0.97648 0.87998 1.48398 1.24863 1.32139 1.28233 1.17750 0.85776 0.79522 0.81479 1.90797 1.49424 1.64949 1.35330 1.20284 0.94812 0.96731 0.95176 1.23683 0.93256 1.03259 1.01295 1.18974 0.86944 0.91538 0.89338 1.84807 1.57266 1.61196 1.25254 1.66655 1.34961 1.15870 1.03135 1.19968 0.89341 0.94746 0.91840 1.20780 1.00178 0.93307 0.98701 1.23181 0.98501 1.03105 0.96114 1.23001 1.03384 0.92475 1.00894 1.22106 0.97384 0.95245 0.99835 1.23460 0.86035 0.93019 1.01802 0.92825 0.80154 0.89533 0.90322 0.90489 0.90568 0.80535 0.74089 0.85731 0.87809 0.87687 0.87947 0.88574 0.82950 0.91056 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.97 55.49 0.78 -27.53 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.11 27.74 -169.99 -4.71 16.39 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 7 C -0.26 -6.86 10.47 -15.06 -0.16 -7.02 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.73 -16.01 5.08 -51.36 -0.26 -16.27 16 10 C 0.18 3.06 3.68 -65.79 -0.24 2.82 16 11 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 12 C -0.15 -1.82 6.58 -24.90 -0.16 -1.98 16 13 C 0.09 0.99 4.88 -3.07 -0.01 0.98 16 14 N -0.60 -8.76 3.33 -171.87 -0.57 -9.33 16 15 C 0.57 8.75 7.83 -12.18 -0.10 8.65 16 16 O -0.53 -9.90 16.69 5.35 0.09 -9.81 16 17 C -0.06 -0.75 5.90 -104.68 -0.62 -1.36 16 18 C -0.19 -2.06 8.63 -38.84 -0.34 -2.40 16 19 C 0.31 3.37 7.74 -17.16 -0.13 3.24 16 20 O -0.48 -4.20 13.56 -18.75 -0.25 -4.46 16 21 N -0.49 -5.79 10.27 -9.59 -0.10 -5.89 16 22 C 0.18 1.96 6.46 -82.65 -0.53 1.43 16 23 C -0.11 -0.94 6.21 -91.77 -0.57 -1.51 16 24 C -0.17 -1.19 9.80 -26.69 -0.26 -1.46 16 25 C -0.16 -1.12 10.24 -26.69 -0.27 -1.39 16 26 C -0.13 -1.47 8.92 -39.03 -0.35 -1.82 16 27 C 0.08 1.41 6.63 -2.54 -0.02 1.39 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.36 7.74 5.57 -40.82 -0.23 7.51 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 32 H 0.08 0.67 6.76 -51.93 -0.35 0.32 16 33 H 0.08 0.72 6.76 -51.93 -0.35 0.36 16 34 H 0.18 1.55 2.93 -52.95 -0.16 1.39 16 35 H 0.40 1.47 9.06 45.56 0.41 1.89 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 0.77 6.37 -51.93 -0.33 0.44 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.15 1.72 5.92 -52.49 -0.31 1.41 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.57 7.99 -51.93 -0.41 1.15 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -34.29 353.53 -8.26 -42.55 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.69 Total: 9.25 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.86 Total: -0.23 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.16 Total: -59.03 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.16 Total: -14.27 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.29 -8.26 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968892966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.694 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds