Wall clock time and date at job start Tue Mar 31 2020 11:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48497 * 109.47227 * 239.99631 * 3 2 1 5 5 H 1.48500 * 109.47037 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47264 * 119.99538 * 3 2 1 7 7 C 1.38816 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99905 * 195.18933 * 7 2 1 9 9 N 1.36938 * 119.99920 * 15.18395 * 7 2 1 10 10 C 1.47165 * 120.70907 * 25.35376 * 9 7 2 11 11 C 1.53884 * 108.03375 * 132.73307 * 10 9 7 12 12 H 1.09000 * 112.57889 * 182.22200 * 11 10 9 13 13 C 1.54549 * 107.82684 * 306.49966 * 11 10 9 14 14 C 1.54278 * 104.94657 * 89.01469 * 13 11 10 15 15 C 1.54804 * 104.72733 * 0.08382 * 14 13 11 16 16 H 1.08996 * 112.68586 * 146.64003 * 15 14 13 17 17 C 1.47164 * 120.70964 * 205.32740 * 9 7 2 18 18 N 1.48307 * 107.20826 * 58.35499 * 11 10 9 19 19 C 1.34775 * 128.07333 * 106.70985 * 18 11 10 20 20 O 1.21282 * 120.00563 * 359.97438 * 19 18 11 21 21 C 1.50701 * 119.99740 * 179.97438 * 19 18 11 22 22 O 1.42895 * 109.47268 * 179.97438 * 21 19 18 23 23 C 1.35911 * 117.00139 * 179.97438 * 22 21 19 24 24 C 1.39138 * 120.47394 * 179.72318 * 23 22 21 25 25 C 1.38538 * 118.37434 * 179.71639 * 24 23 22 26 26 C 1.38250 * 119.22273 * 0.57788 * 25 24 23 27 27 N 1.31853 * 120.88582 * 359.68439 * 26 25 24 28 28 C 1.31842 * 121.77965 * 0.02562 * 27 26 25 29 29 H 0.97000 * 119.99547 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.75007 * 13.09249 * 10 9 7 31 31 H 1.08997 * 109.74817 * 252.36774 * 10 9 7 32 32 H 1.09003 * 110.35934 * 207.90986 * 13 11 10 33 33 H 1.09000 * 110.36612 * 330.11328 * 13 11 10 34 34 H 1.09001 * 110.36714 * 118.89583 * 14 13 11 35 35 H 1.09001 * 110.36314 * 241.21854 * 14 13 11 36 36 H 1.08996 * 109.74906 * 107.63711 * 17 9 7 37 37 H 1.09000 * 109.79143 * 346.92208 * 17 9 7 38 38 H 1.09002 * 109.47374 * 300.00154 * 21 19 18 39 39 H 1.09006 * 109.47345 * 59.99823 * 21 19 18 40 40 H 1.07999 * 120.81370 * 359.97438 * 24 23 22 41 41 H 1.08002 * 120.38973 * 180.26122 * 25 24 23 42 42 H 1.07994 * 119.56265 * 179.70522 * 26 25 24 43 43 H 1.08003 * 119.66132 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0620 -1.2184 0.2456 9 7 1.3614 -2.3675 -0.3096 10 6 0.1553 -2.3547 -1.1527 11 6 0.3129 -3.4459 -2.2263 12 1 -0.5277 -3.4754 -2.9196 13 6 1.6577 -3.2072 -2.9496 14 6 2.6965 -4.0007 -2.1302 15 6 1.8819 -4.6497 -0.9850 16 1 2.2715 -5.6247 -0.6923 17 6 1.8557 -3.6595 0.1927 18 7 0.5004 -4.7350 -1.5174 19 6 -0.3795 -5.7477 -1.3875 20 8 -1.4813 -5.6616 -1.8871 21 6 0.0058 -6.9870 -0.6216 22 8 -1.0869 -7.9077 -0.6243 23 6 -0.9028 -9.0859 0.0277 24 6 -1.9212 -10.0327 0.0754 25 6 -1.6844 -11.2211 0.7468 26 6 -0.4581 -11.4211 1.3530 27 7 0.4843 -10.5008 1.2937 28 6 0.3011 -9.3592 0.6602 29 1 -0.4849 0.8401 -0.0004 30 1 0.0500 -1.3806 -1.6301 31 1 -0.7232 -2.5631 -0.5420 32 1 1.6112 -3.5851 -3.9709 33 1 1.9052 -2.1456 -2.9496 34 1 3.1610 -4.7688 -2.7487 35 1 3.4537 -3.3290 -1.7256 36 1 1.1897 -4.0310 0.9715 37 1 2.8615 -3.5388 0.5949 38 1 0.8729 -7.4502 -1.0924 39 1 0.2509 -6.7176 0.4059 40 1 -2.8716 -9.8474 -0.4030 41 1 -2.4506 -11.9804 0.8004 42 1 -0.2693 -12.3435 1.8819 43 1 1.0966 -8.6291 0.6335 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018065310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:29 Heat of formation + Delta-G solvation = 12.331911 kcal Electronic energy + Delta-G solvation = -26825.793899 eV Core-core repulsion = 23065.868587 eV Total energy + Delta-G solvation = -3759.925312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90921 -40.16289 -38.58191 -37.33922 -34.19551 -32.67682 -31.57760 -31.27652 -30.58506 -30.38840 -28.27049 -26.23155 -23.98898 -23.75739 -23.37466 -22.82199 -20.89923 -20.21747 -18.60507 -18.37867 -17.42895 -16.94207 -16.62397 -16.50239 -15.97295 -15.26644 -15.05330 -14.64415 -14.53987 -14.46791 -13.66724 -13.54417 -13.43316 -13.21232 -12.99029 -12.86180 -12.68328 -12.41577 -12.19402 -11.98199 -11.69222 -11.46431 -11.19202 -10.89104 -10.65409 -10.56947 -10.39628 -10.07768 -9.97682 -9.92142 -9.77373 -9.74459 -9.47970 -8.70196 -8.61444 -8.34648 -6.80311 -5.87125 -3.30808 0.85027 1.04400 2.44300 2.79790 3.32254 3.38541 3.39506 3.53503 3.55313 4.23460 4.35499 4.39580 4.50457 4.65353 4.77466 4.84383 4.92698 4.98009 5.12618 5.20535 5.26239 5.28087 5.30420 5.46951 5.68691 5.70719 5.72971 5.83576 5.97765 6.06967 6.21449 6.24867 6.31753 6.34120 6.50710 6.54538 6.64979 6.87167 6.96557 7.22391 7.50978 7.67294 7.69022 7.92522 8.28648 8.39217 9.08177 9.70666 10.26481 11.20839 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.002983 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.944263 B = 9383.478381 C = 9536.117989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.172 3.828 11 C 0.108 3.892 12 H 0.089 0.911 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.102 3.898 16 H 0.085 0.915 17 C 0.136 3.864 18 N -0.603 5.603 19 C 0.533 3.467 20 O -0.532 6.532 21 C 0.044 3.956 22 O -0.282 6.282 23 C 0.085 3.915 24 C -0.108 4.108 25 C -0.132 4.132 26 C 0.054 3.946 27 N -0.449 5.449 28 C 0.014 3.986 29 H 0.256 0.744 30 H 0.097 0.903 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -18.073 -1.599 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.310 5.310 10 C 0.046 3.954 11 C 0.005 3.995 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.003 4.003 16 H 0.103 0.897 17 C 0.009 3.991 18 N -0.338 5.338 19 C 0.320 3.680 20 O -0.408 6.408 21 C -0.035 4.035 22 O -0.193 6.193 23 C 0.036 3.964 24 C -0.134 4.134 25 C -0.151 4.151 26 C -0.103 4.103 27 N -0.159 5.159 28 C -0.144 4.144 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.971 -17.993 -1.545 18.166 hybrid contribution -0.211 1.039 -0.150 1.071 sum 1.759 -16.954 -1.695 17.129 Atomic orbital electron populations 1.70001 1.05232 1.25835 1.53747 1.25042 0.95332 0.98412 1.00760 0.86334 0.78817 0.83266 0.78106 1.20955 1.21640 1.20923 1.19121 0.92058 0.84158 1.43080 0.91314 1.44056 1.30235 1.01049 1.55691 1.21329 0.88396 0.95995 0.89703 1.23317 0.97740 0.82835 0.95637 0.89246 1.22330 0.94085 1.01932 0.96800 1.22327 0.97943 0.98671 0.95821 1.23168 0.81309 0.99034 0.96774 0.89669 1.21461 0.98448 0.87180 0.92053 1.49122 1.14524 1.16730 1.53408 1.19286 0.84595 0.82857 0.81275 1.90725 1.20879 1.80425 1.48803 1.22552 0.89372 0.89394 1.02171 1.86179 1.39125 1.24264 1.69687 1.20172 0.95402 0.87000 0.93795 1.20993 0.99114 0.92390 1.00913 1.22024 0.98817 0.97031 0.97258 1.22665 0.89732 0.98551 0.99382 1.67528 1.32884 1.01016 1.14428 1.22971 0.96159 0.96542 0.98693 0.93362 0.88481 0.95711 0.92996 0.89349 0.92749 0.89694 0.96326 0.91571 0.89067 0.88742 0.83783 0.84034 0.82548 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 11.02 55.49 0.61 -24.63 16 2 C 0.00 0.09 4.99 -17.43 -0.09 0.00 16 3 Si 0.91 20.66 29.58 -169.99 -5.03 15.63 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.40 9.66 -15.06 -0.15 -6.54 16 8 H 0.07 1.67 7.86 -52.49 -0.41 1.26 16 9 N -0.59 -13.36 2.29 -171.08 -0.39 -13.75 16 10 C 0.17 3.95 4.60 -3.22 -0.01 3.93 16 11 C 0.11 2.04 4.12 -65.66 -0.27 1.77 16 12 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 13 C -0.11 -1.85 6.18 -25.25 -0.16 -2.01 16 14 C -0.11 -1.59 6.20 -25.11 -0.16 -1.74 16 15 C 0.10 1.52 3.99 -65.52 -0.26 1.26 16 16 H 0.09 0.96 7.41 -51.93 -0.38 0.57 16 17 C 0.14 2.50 6.01 -3.22 -0.02 2.48 16 18 N -0.60 -10.38 2.74 -152.89 -0.42 -10.80 16 19 C 0.53 9.38 8.00 -10.99 -0.09 9.29 16 20 O -0.53 -11.50 16.81 -14.36 -0.24 -11.74 16 21 C 0.04 0.57 4.21 36.01 0.15 0.72 16 22 O -0.28 -4.12 9.68 -39.37 -0.38 -4.50 16 23 C 0.08 1.04 6.71 -39.07 -0.26 0.78 16 24 C -0.11 -1.13 10.13 -39.14 -0.40 -1.52 16 25 C -0.13 -1.10 10.11 -39.47 -0.40 -1.49 16 26 C 0.05 0.50 11.18 -17.54 -0.20 0.31 16 27 N -0.45 -5.25 10.36 -13.12 -0.14 -5.39 16 28 C 0.01 0.16 10.22 -17.37 -0.18 -0.01 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.10 2.46 6.20 -51.93 -0.32 2.13 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.60 7.84 -51.93 -0.41 1.19 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 1.14 7.96 -51.93 -0.41 0.72 16 38 H 0.09 0.92 7.57 -51.93 -0.39 0.53 16 39 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 40 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.16 1.50 6.32 -52.48 -0.33 1.17 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -32.23 349.77 -9.17 -41.40 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.98 Total: 1.29 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.48 Total: 7.22 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.34 Total: -54.57 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.62 Total: -16.25 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.23 -9.17 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018065310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.733 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds