Wall clock time and date at job start Tue Mar 31 2020 11:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99978 * 2 1 4 4 H 1.48500 * 109.47011 * 240.00045 * 3 2 1 5 5 H 1.48502 * 109.46950 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47081 * 120.00063 * 3 2 1 7 7 C 1.38811 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99659 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00070 * 359.97438 * 7 2 1 10 10 C 1.46929 * 125.37297 * 179.97438 * 9 7 2 11 11 C 1.54188 * 106.26279 * 162.13240 * 10 9 7 12 12 H 1.08998 * 109.28737 * 271.44718 * 11 10 9 13 13 C 1.50707 * 110.50537 * 151.08854 * 11 10 9 14 14 C 1.51330 * 113.44933 * 289.44354 * 13 11 10 15 15 C 1.50528 * 112.60458 * 305.10796 * 14 13 11 16 16 N 1.44515 * 112.65477 * 42.36751 * 15 14 13 17 17 C 1.34777 * 116.63181 * 154.85724 * 16 15 14 18 18 O 1.21552 * 119.99913 * 179.13043 * 17 16 15 19 19 C 1.47833 * 120.00000 * 359.13448 * 17 16 15 20 20 N 1.32867 * 119.78110 * 6.86284 * 19 17 16 21 21 C 1.31375 * 121.69160 * 179.70932 * 20 19 17 22 22 C 1.38767 * 121.06702 * 0.57219 * 21 20 19 23 23 C 1.38304 * 119.44464 * 359.71537 * 22 21 20 24 24 C 1.39337 * 118.44070 * 0.02562 * 23 22 21 25 25 O 1.35655 * 120.53918 * 179.97438 * 24 23 22 26 26 C 1.44095 * 126.73836 * 334.88719 * 16 15 14 27 27 H 1.09002 * 108.46194 * 254.34732 * 26 16 15 28 28 C 1.46814 * 125.37817 * 359.97438 * 9 7 2 29 29 H 0.97005 * 119.99970 * 0.02562 * 1 2 3 30 30 H 1.09006 * 110.09492 * 42.94221 * 10 9 7 31 31 H 1.08992 * 110.14823 * 281.36435 * 10 9 7 32 32 H 1.09000 * 108.66827 * 50.42770 * 13 11 10 33 33 H 1.09000 * 108.66920 * 168.46059 * 13 11 10 34 34 H 1.08998 * 108.97767 * 65.19144 * 14 13 11 35 35 H 1.08994 * 108.97897 * 183.90383 * 14 13 11 36 36 H 1.09001 * 108.62593 * 281.70487 * 15 14 13 37 37 H 1.08996 * 108.98830 * 163.28038 * 15 14 13 38 38 H 1.07994 * 119.46526 * 180.31389 * 21 20 19 39 39 H 1.08006 * 120.27668 * 179.74821 * 22 21 20 40 40 H 1.08006 * 120.77886 * 180.02562 * 23 22 21 41 41 H 0.96692 * 113.99528 * 270.01800 * 25 24 23 42 42 H 1.09004 * 109.83812 * 300.42787 * 28 9 7 43 43 H 1.08999 * 109.84178 * 61.33140 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.9378 -3.7237 0.0017 11 6 0.8374 -4.7030 0.4572 12 1 0.8514 -4.7800 1.5443 13 6 1.0634 -6.0670 -0.1426 14 6 0.8048 -6.1200 -1.6327 15 6 -0.5710 -5.6312 -1.9989 16 7 -0.9528 -4.4442 -1.2683 17 6 -1.8704 -3.6462 -1.8494 18 8 -2.2476 -2.6399 -1.2814 19 6 -2.4183 -3.9948 -3.1775 20 7 -2.1086 -5.1610 -3.7337 21 6 -2.5786 -5.5114 -4.9094 22 6 -3.4136 -4.6670 -5.6274 23 6 -3.7610 -3.4394 -5.0936 24 6 -3.2544 -3.0922 -3.8429 25 8 -3.5673 -1.8984 -3.2796 26 6 -0.4535 -4.0252 0.0168 27 1 -1.2255 -4.2098 0.7639 28 6 -0.1362 -2.5256 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 2.7756 -3.7515 0.6985 31 1 2.2767 -3.9814 -1.0016 32 1 2.0959 -6.3631 0.0430 33 1 0.4028 -6.7793 0.3517 34 1 1.5361 -5.4924 -2.1419 35 1 0.9214 -7.1478 -1.9764 36 1 -1.2898 -6.4224 -1.7854 37 1 -0.5969 -5.4113 -3.0661 38 1 -2.3074 -6.4702 -5.3257 39 1 -3.7895 -4.9663 -6.5947 40 1 -4.4098 -2.7655 -5.6336 41 1 -2.9540 -1.1852 -3.5037 42 1 -0.5524 -2.0429 0.8870 43 1 -0.5513 -2.0710 -0.8967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050028811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:43 Heat of formation + Delta-G solvation = 35.737686 kcal Electronic energy + Delta-G solvation = -28190.912355 eV Core-core repulsion = 24432.001994 eV Total energy + Delta-G solvation = -3758.910361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11709 -39.71664 -37.53887 -37.04267 -35.30512 -33.21153 -32.37939 -31.86269 -30.37843 -29.45002 -27.20063 -25.53659 -24.76771 -23.57383 -23.44053 -21.91421 -20.98130 -19.75103 -18.39989 -17.77280 -17.43664 -16.78610 -16.58808 -15.91007 -15.60301 -15.19454 -14.78070 -14.51156 -14.29783 -13.93467 -13.71798 -13.59979 -13.39598 -13.23460 -12.81088 -12.67430 -12.37396 -12.09341 -11.67894 -11.52466 -11.11719 -10.92121 -10.88882 -10.68365 -10.52908 -10.26311 -10.16273 -9.94479 -9.89924 -9.84032 -9.54286 -9.26675 -8.96288 -8.72568 -8.35117 -7.73238 -6.61623 -5.51718 -2.88096 0.62047 1.00053 3.05091 3.42592 3.47477 3.51519 3.53332 3.84830 4.07837 4.28964 4.61019 4.65600 4.69489 4.85565 5.09749 5.12145 5.24928 5.27951 5.42231 5.45764 5.62242 5.70261 5.79796 5.82827 5.88838 5.98068 6.06439 6.10903 6.19163 6.23928 6.33531 6.39917 6.57463 6.63935 6.71568 6.82030 6.92384 7.27935 7.55976 7.68951 7.75249 7.90785 7.95097 8.19982 8.47144 8.78602 9.38103 9.99097 10.64656 11.56173 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.005583 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.300356 B = 5013.643233 C = 6587.516214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.234 4.234 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.101 4.101 12 H 0.079 0.921 13 C -0.101 4.101 14 C -0.131 4.131 15 C 0.103 3.897 16 N -0.569 5.569 17 C 0.541 3.459 18 O -0.478 6.478 19 C 0.058 3.942 20 N -0.432 5.432 21 C 0.072 3.928 22 C -0.140 4.140 23 C -0.115 4.115 24 C 0.124 3.876 25 O -0.469 6.469 26 C 0.130 3.870 27 H 0.056 0.944 28 C 0.166 3.834 29 H 0.252 0.748 30 H 0.031 0.969 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.122 0.878 38 H 0.163 0.837 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.402 0.598 42 H 0.052 0.948 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 -14.202 -11.266 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.362 4.362 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.121 4.121 12 H 0.097 0.903 13 C -0.140 4.140 14 C -0.169 4.169 15 C -0.020 4.020 16 N -0.302 5.302 17 C 0.326 3.674 18 O -0.351 6.351 19 C -0.080 4.080 20 N -0.146 5.146 21 C -0.086 4.086 22 C -0.160 4.160 23 C -0.141 4.141 24 C 0.075 3.925 25 O -0.279 6.279 26 C 0.026 3.974 27 H 0.074 0.926 28 C 0.041 3.959 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.139 0.861 38 H 0.180 0.820 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.261 0.739 42 H 0.070 0.930 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.665 -14.246 -10.163 18.394 hybrid contribution 0.373 1.552 -0.682 1.736 sum -5.291 -12.694 -10.845 17.515 Atomic orbital electron populations 1.70021 1.04427 1.24838 1.56094 1.24830 0.95686 0.97396 1.02402 0.86295 0.78459 0.83786 0.77742 1.21416 1.21657 1.21286 1.18931 0.90209 0.82518 1.44544 0.90818 1.44411 1.01954 0.99780 1.87281 1.21375 0.93859 0.86086 0.97123 1.21327 0.95793 0.94640 1.00327 0.90265 1.20491 1.01419 0.96410 0.95646 1.21034 0.97984 1.01108 0.96784 1.21595 0.94762 0.86526 0.99122 1.46640 1.40260 1.23417 1.19902 1.17835 0.81392 0.84058 0.84148 1.90948 1.57638 1.23986 1.62520 1.22116 0.96979 0.91947 0.96985 1.68333 1.19149 1.15834 1.11296 1.23010 0.94589 0.99799 0.91250 1.22228 0.98553 0.94090 1.01158 1.21999 0.99993 0.97992 0.94127 1.19398 0.93422 0.88940 0.90729 1.84750 1.53604 1.16821 1.72759 1.21110 0.94661 0.98978 0.82631 0.92602 1.21694 0.83458 0.86783 1.03917 0.93757 0.95111 0.96757 0.91819 0.92642 0.91817 0.91165 0.93202 0.86089 0.82010 0.84290 0.83798 0.73860 0.92997 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.98 10.26 55.49 0.57 -27.41 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.82 10.25 -15.06 -0.15 -6.97 16 8 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.61 -16.44 3.39 -171.73 -0.58 -17.03 16 10 C 0.14 3.10 6.65 -3.19 -0.02 3.08 16 11 C -0.10 -1.87 3.08 -91.50 -0.28 -2.15 16 12 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.10 -1.46 5.19 -28.72 -0.15 -1.61 16 14 C -0.13 -1.80 5.75 -28.81 -0.17 -1.96 16 15 C 0.10 1.56 4.87 -6.34 -0.03 1.53 16 16 N -0.57 -10.89 3.09 -172.23 -0.53 -11.43 16 17 C 0.54 11.02 6.90 -12.33 -0.09 10.94 16 18 O -0.48 -11.53 12.17 -16.51 -0.20 -11.73 16 19 C 0.06 0.95 6.55 -82.88 -0.54 0.40 16 20 N -0.43 -5.81 5.69 -9.71 -0.06 -5.87 16 21 C 0.07 0.70 11.17 -17.55 -0.20 0.50 16 22 C -0.14 -1.20 10.10 -39.36 -0.40 -1.60 16 23 C -0.11 -1.22 10.12 -39.15 -0.40 -1.62 16 24 C 0.12 1.83 6.74 -38.56 -0.26 1.57 16 25 O -0.47 -7.55 11.61 -40.50 -0.47 -8.02 16 26 C 0.13 2.75 3.13 -69.41 -0.22 2.53 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 C 0.17 4.39 4.13 -3.72 -0.02 4.37 16 29 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.01 0.32 6.68 -51.93 -0.35 -0.02 16 32 H 0.06 0.83 8.11 -51.93 -0.42 0.40 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.96 6.98 -51.93 -0.36 0.60 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 37 H 0.12 1.81 4.71 -77.45 -0.36 1.45 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.40 5.40 9.06 45.56 0.41 5.81 16 42 H 0.05 1.56 7.37 -51.93 -0.38 1.18 16 43 H 0.08 2.45 4.44 -51.93 -0.23 2.22 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -35.88 333.64 -9.32 -45.20 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -5.04 Total: 4.67 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -3.01 Total: 8.76 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.60 Total: -61.73 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.67 Total: -19.75 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.88 -9.32 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050028811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.935 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds