Wall clock time and date at job start Tue Mar 31 2020 11:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46892 * 300.00570 * 3 2 1 6 6 H 1.48501 * 109.46983 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00353 * 359.97438 * 7 2 1 10 10 C 1.47673 * 134.45842 * 179.97438 * 9 7 2 11 11 C 1.53442 * 85.97950 * 204.26322 * 10 9 7 12 12 C 1.47677 * 134.45686 * 359.95512 * 9 7 2 13 13 C 1.52463 * 113.60556 * 222.53664 * 11 10 9 14 14 N 1.47342 * 108.28350 * 180.20389 * 13 11 10 15 15 C 1.34769 * 121.05395 * 228.32396 * 14 13 11 16 16 O 1.21787 * 120.00018 * 354.20825 * 15 14 13 17 17 C 1.41517 * 120.00233 * 174.21617 * 15 14 13 18 18 C 1.35609 * 120.00340 * 148.31147 * 17 15 14 19 19 C 1.41672 * 120.00284 * 352.25521 * 18 17 15 20 20 C 1.38281 * 126.26380 * 146.32666 * 19 18 17 21 21 C 1.39786 * 107.08014 * 179.97438 * 20 19 18 22 22 C 1.35499 * 107.90922 * 359.74344 * 21 20 19 23 23 N 1.35756 * 108.91329 * 0.42617 * 22 21 20 24 24 H 0.96992 * 125.69428 * 179.83609 * 23 22 21 25 25 C 1.47124 * 117.88721 * 48.05239 * 14 13 11 26 26 C 1.53217 * 108.73145 * 308.04161 * 25 14 13 27 27 O 1.42484 * 113.80791 * 91.24745 * 11 10 9 28 28 H 0.97006 * 119.99532 * 359.97438 * 1 2 3 29 29 H 1.09004 * 113.79279 * 89.99545 * 10 9 7 30 30 H 1.09000 * 113.90050 * 318.54364 * 10 9 7 31 31 H 1.08993 * 113.79097 * 41.47668 * 12 9 7 32 32 H 1.08993 * 113.78888 * 270.00486 * 12 9 7 33 33 H 1.08999 * 109.68683 * 60.45926 * 13 11 10 34 34 H 1.08999 * 109.56774 * 299.88563 * 13 11 10 35 35 H 1.08006 * 119.99210 * 328.30605 * 17 15 14 36 36 H 1.08000 * 120.00064 * 172.25929 * 18 17 15 37 37 H 1.07996 * 126.45534 * 0.02562 * 20 19 18 38 38 H 1.08003 * 126.04391 * 179.97438 * 21 20 19 39 39 H 1.07999 * 125.54579 * 180.25820 * 22 21 20 40 40 H 1.09011 * 109.59817 * 67.81996 * 25 14 13 41 41 H 1.09004 * 109.59135 * 188.26873 * 25 14 13 42 42 H 1.08997 * 109.49807 * 174.08986 * 26 25 14 43 43 H 1.08995 * 109.49422 * 294.14329 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7211 -3.8108 -0.0015 11 6 0.3474 -4.0807 -0.6295 12 6 -0.1045 -2.7567 0.0008 13 6 -0.3607 -5.2994 -0.0484 14 7 -1.6562 -5.4517 -0.7336 15 6 -2.7934 -5.6431 -0.0360 16 8 -2.7485 -5.7980 1.1711 17 6 -4.0396 -5.6642 -0.7063 18 6 -5.0488 -6.4389 -0.2370 19 6 -4.8097 -7.3491 0.8219 20 6 -5.7056 -7.7037 1.8138 21 6 -5.0569 -8.6228 2.6435 22 6 -3.8078 -8.8157 2.1553 23 7 -3.6426 -8.0429 1.0514 24 1 -2.8382 -7.9913 0.5120 25 6 -1.6698 -5.3821 -2.2031 26 6 -0.9511 -4.1020 -2.6417 27 8 0.3534 -4.0656 -2.0543 28 1 -0.4850 0.8401 0.0004 29 1 1.8398 -4.2349 0.9956 30 1 2.5585 -4.0358 -0.6620 31 1 -0.7175 -2.1425 -0.6587 32 1 -0.5292 -2.8670 0.9985 33 1 -0.5238 -5.1548 1.0196 34 1 0.2489 -6.1881 -0.2114 35 1 -4.1868 -5.0632 -1.5915 36 1 -6.0350 -6.3620 -0.6706 37 1 -6.7162 -7.3397 1.9257 38 1 -5.4783 -9.0982 3.5170 39 1 -3.0636 -9.4749 2.5773 40 1 -1.1547 -6.2500 -2.6151 41 1 -2.7001 -5.3630 -2.5586 42 1 -0.8613 -4.0891 -3.7279 43 1 -1.5224 -3.2336 -2.3138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053234708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:10 Heat of formation + Delta-G solvation = 76.308681 kcal Electronic energy + Delta-G solvation = -27127.215537 eV Core-core repulsion = 23370.064466 eV Total energy + Delta-G solvation = -3757.151071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32868 -40.28482 -38.77562 -36.24806 -34.45790 -33.93320 -32.26281 -30.95227 -30.09669 -28.78648 -27.65613 -26.16445 -25.10831 -23.53785 -23.32766 -21.61892 -20.51522 -20.38269 -19.25344 -18.82191 -17.82581 -16.89701 -16.69054 -16.03053 -15.49504 -15.23380 -14.85598 -14.55849 -14.34614 -14.14978 -14.00770 -13.89927 -13.56656 -13.31686 -13.15792 -12.89209 -12.61085 -12.36968 -12.26020 -12.21268 -11.76488 -11.36800 -11.16150 -10.89972 -10.82223 -10.68508 -10.31300 -10.14157 -9.94253 -9.65298 -9.55866 -9.26775 -8.87066 -8.83051 -8.26616 -7.67656 -6.88458 -5.75338 -3.07775 0.74671 2.46728 2.94619 3.01393 3.24337 3.40004 3.43052 3.44886 3.47756 4.01866 4.44365 4.65151 4.81284 4.88374 5.02556 5.09374 5.12875 5.22513 5.25098 5.31756 5.35888 5.38037 5.49693 5.55980 5.69960 5.78970 5.87330 5.90677 5.96717 6.04383 6.24690 6.26417 6.27281 6.43458 6.47002 6.56619 6.92578 6.99095 7.08396 7.18135 7.41219 7.49588 7.53098 7.79029 7.97742 8.20149 9.04497 9.71296 10.57346 11.41773 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003262 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.263663 B = 8581.275114 C = 8823.335586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.603 5.603 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.099 3.901 14 N -0.608 5.608 15 C 0.541 3.459 16 O -0.533 6.533 17 C -0.235 4.235 18 C 0.010 3.990 19 C 0.019 3.981 20 C -0.158 4.158 21 C -0.211 4.211 22 C 0.011 3.989 23 N -0.521 5.521 24 H 0.411 0.589 25 C 0.074 3.926 26 C 0.045 3.955 27 O -0.342 6.342 28 H 0.252 0.748 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.161 0.839 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.162 -18.272 -3.979 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.010 3.990 11 C 0.008 3.992 12 C 0.026 3.974 13 C -0.024 4.024 14 N -0.342 5.342 15 C 0.333 3.667 16 O -0.411 6.411 17 C -0.257 4.257 18 C -0.010 4.010 19 C -0.092 4.092 20 C -0.183 4.183 21 C -0.235 4.235 22 C -0.125 4.125 23 N -0.114 5.114 24 H 0.249 0.751 25 C -0.050 4.050 26 C -0.032 4.032 27 O -0.259 6.259 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.178 0.822 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.763 -17.963 -3.546 20.750 hybrid contribution 0.588 1.170 -0.094 1.313 sum -9.175 -16.793 -3.640 19.479 Atomic orbital electron populations 1.69831 1.05054 1.25159 1.56871 1.24777 0.95674 0.97529 1.02486 0.86028 0.78735 0.83669 0.77224 1.20429 1.21723 1.21762 1.19047 0.90292 0.81755 1.43542 0.90057 1.45784 1.01945 0.99115 1.86039 1.22480 0.93223 0.86818 0.96504 1.23592 0.99145 0.94615 0.81885 1.22673 0.88646 0.88998 0.97097 1.22151 0.82897 0.98377 0.98986 1.48254 1.07601 1.71486 1.06866 1.17274 0.84402 0.77551 0.87505 1.90930 1.87044 1.49535 1.13639 1.22119 0.94753 1.05299 1.03525 1.20725 0.98411 0.91065 0.90829 1.18100 0.87401 1.02504 1.01233 1.21280 0.99200 1.01279 0.96565 1.20725 0.95057 1.04700 1.03025 1.21892 0.99272 1.00532 0.90770 1.42139 1.12609 1.33382 1.23248 0.75098 1.22472 1.02364 0.99917 0.80213 1.22880 0.85864 0.95990 0.98505 1.87933 1.25708 1.94293 1.17997 0.93757 0.93331 0.92614 0.90607 0.94975 0.88128 0.91536 0.84407 0.83774 0.84492 0.84781 0.82173 0.90695 0.88963 0.88147 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.97 11.39 55.49 0.63 -27.34 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.30 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -15.95 3.70 -180.33 -0.67 -16.61 16 10 C 0.14 2.85 8.33 -3.18 -0.03 2.83 16 11 C 0.05 0.96 1.21 -90.53 -0.11 0.85 16 12 C 0.15 3.70 6.64 -3.18 -0.02 3.68 16 13 C 0.10 1.59 5.72 -3.86 -0.02 1.57 16 14 N -0.61 -8.57 3.03 -176.13 -0.53 -9.11 16 15 C 0.54 7.94 5.78 -15.01 -0.09 7.85 16 16 O -0.53 -9.60 13.20 5.11 0.07 -9.53 16 17 C -0.24 -2.68 8.68 -39.27 -0.34 -3.02 16 18 C 0.01 0.10 9.93 -39.21 -0.39 -0.29 16 19 C 0.02 0.24 5.44 -83.90 -0.46 -0.22 16 20 C -0.16 -1.89 10.86 -38.99 -0.42 -2.31 16 21 C -0.21 -2.42 10.81 -39.98 -0.43 -2.86 16 22 C 0.01 0.13 11.90 -16.79 -0.20 -0.07 16 23 N -0.52 -6.33 4.33 -10.56 -0.05 -6.38 16 24 H 0.41 4.78 7.32 -40.82 -0.30 4.48 16 25 C 0.07 0.83 6.50 -3.59 -0.02 0.81 16 26 C 0.05 0.65 6.88 37.27 0.26 0.91 16 27 O -0.34 -6.47 10.52 -35.23 -0.37 -6.84 16 28 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 2.06 6.31 -51.93 -0.33 1.73 16 32 H 0.03 0.84 7.92 -51.93 -0.41 0.42 16 33 H 0.10 1.78 6.94 -51.93 -0.36 1.42 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.14 1.23 6.70 -52.48 -0.35 0.88 16 36 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.09 0.78 5.71 -51.93 -0.30 0.48 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.01 7.19 -51.93 -0.37 0.64 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -35.95 349.03 -8.98 -44.93 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.77 Total: 5.12 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.53 Total: 2.92 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.62 Total: -59.44 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.30 Total: -16.38 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.95 -8.98 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053234708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.239 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds