Wall clock time and date at job start Tue Mar 31 2020 11:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48496 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46892 * 300.00570 * 3 2 1 6 6 H 1.48501 * 109.46983 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00353 * 359.97438 * 7 2 1 10 10 C 1.47673 * 134.45842 * 179.97438 * 9 7 2 11 11 C 1.53442 * 85.97950 * 204.26322 * 10 9 7 12 12 C 1.47677 * 134.45686 * 359.95512 * 9 7 2 13 13 C 1.52463 * 113.60556 * 222.53664 * 11 10 9 14 14 N 1.47342 * 108.28350 * 180.20389 * 13 11 10 15 15 C 1.34769 * 121.05395 * 228.32396 * 14 13 11 16 16 O 1.21787 * 120.00018 * 354.20825 * 15 14 13 17 17 C 1.41517 * 120.00233 * 174.21617 * 15 14 13 18 18 C 1.35609 * 120.00340 * 148.31147 * 17 15 14 19 19 C 1.41672 * 120.00284 * 352.25521 * 18 17 15 20 20 C 1.38281 * 126.26380 * 146.32666 * 19 18 17 21 21 C 1.39786 * 107.08014 * 179.97438 * 20 19 18 22 22 C 1.35499 * 107.90922 * 359.74344 * 21 20 19 23 23 N 1.35756 * 108.91329 * 0.42617 * 22 21 20 24 24 H 0.96992 * 125.69428 * 179.83609 * 23 22 21 25 25 C 1.47124 * 117.88721 * 48.05239 * 14 13 11 26 26 C 1.53217 * 108.73145 * 308.04161 * 25 14 13 27 27 O 1.42484 * 113.80791 * 91.24745 * 11 10 9 28 28 H 0.97006 * 119.99532 * 359.97438 * 1 2 3 29 29 H 1.09004 * 113.79279 * 89.99545 * 10 9 7 30 30 H 1.09000 * 113.90050 * 318.54364 * 10 9 7 31 31 H 1.08993 * 113.79097 * 41.47668 * 12 9 7 32 32 H 1.08993 * 113.78888 * 270.00486 * 12 9 7 33 33 H 1.08999 * 109.68683 * 60.45926 * 13 11 10 34 34 H 1.08999 * 109.56774 * 299.88563 * 13 11 10 35 35 H 1.08006 * 119.99210 * 328.30605 * 17 15 14 36 36 H 1.08000 * 120.00064 * 172.25929 * 18 17 15 37 37 H 1.07996 * 126.45534 * 0.02562 * 20 19 18 38 38 H 1.08003 * 126.04391 * 179.97438 * 21 20 19 39 39 H 1.07999 * 125.54579 * 180.25820 * 22 21 20 40 40 H 1.09011 * 109.59817 * 67.81996 * 25 14 13 41 41 H 1.09004 * 109.59135 * 188.26873 * 25 14 13 42 42 H 1.08997 * 109.49807 * 174.08986 * 26 25 14 43 43 H 1.08995 * 109.49422 * 294.14329 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7211 -3.8108 -0.0015 11 6 0.3474 -4.0807 -0.6295 12 6 -0.1045 -2.7567 0.0008 13 6 -0.3607 -5.2994 -0.0484 14 7 -1.6562 -5.4517 -0.7336 15 6 -2.7934 -5.6431 -0.0360 16 8 -2.7485 -5.7980 1.1711 17 6 -4.0396 -5.6642 -0.7063 18 6 -5.0488 -6.4389 -0.2370 19 6 -4.8097 -7.3491 0.8219 20 6 -5.7056 -7.7037 1.8138 21 6 -5.0569 -8.6228 2.6435 22 6 -3.8078 -8.8157 2.1553 23 7 -3.6426 -8.0429 1.0514 24 1 -2.8382 -7.9913 0.5120 25 6 -1.6698 -5.3821 -2.2031 26 6 -0.9511 -4.1020 -2.6417 27 8 0.3534 -4.0656 -2.0543 28 1 -0.4850 0.8401 0.0004 29 1 1.8398 -4.2349 0.9956 30 1 2.5585 -4.0358 -0.6620 31 1 -0.7175 -2.1425 -0.6587 32 1 -0.5292 -2.8670 0.9985 33 1 -0.5238 -5.1548 1.0196 34 1 0.2489 -6.1881 -0.2114 35 1 -4.1868 -5.0632 -1.5915 36 1 -6.0350 -6.3620 -0.6706 37 1 -6.7162 -7.3397 1.9257 38 1 -5.4783 -9.0982 3.5170 39 1 -3.0636 -9.4749 2.5773 40 1 -1.1547 -6.2500 -2.6151 41 1 -2.7001 -5.3630 -2.5586 42 1 -0.8613 -4.0891 -3.7279 43 1 -1.5224 -3.2336 -2.3138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053234708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:09 Heat of formation + Delta-G solvation = 51.252234 kcal Electronic energy + Delta-G solvation = -27128.302066 eV Core-core repulsion = 23370.064466 eV Total energy + Delta-G solvation = -3758.237600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27743 -41.53474 -40.09698 -37.77878 -35.73329 -34.85258 -34.28474 -31.81678 -31.57478 -29.81176 -29.14037 -27.67485 -26.90746 -24.80984 -24.55680 -23.13296 -21.51204 -21.23768 -20.50207 -20.07244 -18.89279 -18.81252 -17.83759 -17.40214 -17.02779 -16.64576 -16.16013 -15.85452 -15.78703 -15.42825 -15.13344 -14.98854 -14.85045 -14.71806 -14.29568 -14.27005 -13.80251 -13.68797 -13.40530 -13.17400 -13.07687 -12.96756 -12.82266 -12.68916 -12.51145 -12.08853 -11.94648 -11.75793 -11.50906 -11.03069 -10.98432 -10.83926 -10.72260 -9.75996 -9.51243 -8.98705 -8.54196 -7.94655 -5.29387 -0.11628 1.41581 1.43577 1.53931 1.54626 1.93477 2.03328 2.35113 2.42632 2.57808 2.62500 3.22728 3.31380 3.59030 3.66430 3.82493 3.96818 4.08649 4.18091 4.30655 4.35914 4.43346 4.54573 4.58532 4.58725 4.60278 4.66148 4.70487 4.77551 4.84550 4.93341 5.06776 5.08641 5.12038 5.19875 5.32411 5.41187 5.42423 5.49024 5.84836 6.07588 6.23839 6.30622 6.37275 6.68824 6.84857 7.11447 7.54628 8.47612 9.22101 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003262 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.263663 B = 8581.275114 C = 8823.335586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.634 5.634 10 C 0.133 3.867 11 C 0.080 3.920 12 C 0.152 3.848 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.538 3.462 16 O -0.575 6.575 17 C -0.253 4.253 18 C 0.027 3.973 19 C -0.005 4.005 20 C -0.173 4.173 21 C -0.228 4.228 22 C 0.001 3.999 23 N -0.526 5.526 24 H 0.412 0.588 25 C 0.080 3.920 26 C 0.038 3.962 27 O -0.363 6.363 28 H 0.247 0.753 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.006 0.994 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.183 0.817 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 -19.883 -5.351 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.361 5.361 10 C 0.008 3.992 11 C 0.038 3.962 12 C 0.026 3.974 13 C -0.014 4.014 14 N -0.344 5.344 15 C 0.332 3.668 16 O -0.457 6.457 17 C -0.274 4.274 18 C 0.007 3.993 19 C -0.117 4.117 20 C -0.198 4.198 21 C -0.252 4.252 22 C -0.135 4.135 23 N -0.118 5.118 24 H 0.249 0.751 25 C -0.042 4.042 26 C -0.039 4.039 27 O -0.281 6.281 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.182 0.818 36 H 0.199 0.801 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.201 0.799 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.990 -19.613 -4.951 22.560 hybrid contribution 0.636 1.612 0.356 1.769 sum -9.354 -18.001 -4.595 20.800 Atomic orbital electron populations 1.70044 1.06647 1.25480 1.58371 1.25689 0.96592 1.01091 1.02870 0.84943 0.78251 0.79003 0.76725 1.18663 1.21683 1.21984 1.19488 0.90928 0.83175 1.42561 0.89523 1.46189 1.03055 1.00674 1.86165 1.22713 0.94678 0.83878 0.97897 1.23052 0.97511 0.93242 0.82372 1.22507 0.87539 0.91912 0.95485 1.21859 0.84253 0.97632 0.97666 1.48348 1.06725 1.71210 1.08105 1.17818 0.85362 0.76510 0.87136 1.90907 1.87616 1.51653 1.15547 1.22171 0.93314 1.07001 1.04935 1.21171 0.99653 0.89248 0.89273 1.18575 0.87589 1.03293 1.02234 1.21654 1.00085 1.01371 0.96662 1.21075 0.95400 1.04968 1.03707 1.22397 0.99915 1.00621 0.90519 1.42231 1.12634 1.33508 1.23460 0.75095 1.22650 1.04395 0.98840 0.78294 1.23192 0.83954 0.96719 1.00063 1.87885 1.28583 1.94407 1.17223 0.94386 0.91344 0.91473 0.94163 0.97625 0.90274 0.88475 0.81772 0.80067 0.82924 0.83237 0.79944 0.88012 0.85497 0.84905 0.95009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.31 11.39 21.65 0.25 -60.07 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.23 -13.70 10.70 84.03 0.90 -12.80 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 9 N -0.63 -34.42 3.70 -729.30 -2.70 -37.12 16 10 C 0.13 5.56 8.33 86.30 0.72 6.28 16 11 C 0.08 3.10 1.21 -10.64 -0.01 3.09 16 12 C 0.15 7.75 6.64 86.30 0.57 8.33 16 13 C 0.11 3.43 5.72 86.04 0.49 3.93 16 14 N -0.61 -16.32 3.03 -829.34 -2.52 -18.83 16 15 C 0.54 15.25 5.78 85.05 0.49 15.74 16 16 O -0.58 -20.84 13.20 -4.63 -0.06 -20.90 16 17 C -0.25 -5.17 8.68 22.47 0.20 -4.98 16 18 C 0.03 0.48 9.93 22.51 0.22 0.71 16 19 C -0.01 -0.13 5.44 39.08 0.21 0.09 16 20 C -0.17 -3.91 10.86 22.65 0.25 -3.66 16 21 C -0.23 -5.00 10.81 22.01 0.24 -4.77 16 22 C 0.00 0.03 11.90 83.45 0.99 1.02 16 23 N -0.53 -12.25 4.33 -187.33 -0.81 -13.06 16 24 H 0.41 9.17 7.32 -92.71 -0.68 8.49 16 25 C 0.08 1.56 6.50 86.33 0.56 2.12 16 26 C 0.04 1.03 6.88 72.05 0.50 1.52 16 27 O -0.36 -13.43 10.52 -148.98 -1.57 -15.00 16 28 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.07 2.60 8.09 -2.38 -0.02 2.58 16 30 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.04 2.32 6.31 -2.39 -0.02 2.30 16 32 H 0.01 0.33 7.92 -2.39 -0.02 0.31 16 33 H 0.08 2.85 6.94 -2.39 -0.02 2.83 16 34 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.16 2.38 6.70 -2.91 -0.02 2.36 16 36 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.13 1.62 5.71 -2.38 -0.01 1.61 16 42 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.03 1.05 7.19 -2.39 -0.02 1.04 16 Total: -1.00 -82.13 349.03 1.77 -80.36 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.36 Total: 22.34 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.79 Total: 12.92 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -5.78 Total: -129.07 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.63 Total: -35.90 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -82.13 1.77 -80.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053234708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.611 kcal (2) G-P(sol) polarization free energy of solvation -82.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds