Wall clock time and date at job start Tue Mar 31 2020 11:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30231 * 126.16836 * 2 1 4 4 N 1.39840 * 110.09248 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.39111 * 180.02562 * 4 3 2 6 6 C 1.36831 * 109.22180 * 0.02562 * 4 3 2 7 7 N 1.32761 * 133.57923 * 180.02562 * 6 4 3 8 8 C 1.31505 * 121.47077 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.20519 * 179.97438 * 8 7 6 10 10 C 1.38805 * 121.59405 * 0.02562 * 8 7 6 11 11 C 1.50698 * 120.18301 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47184 * 89.99377 * 11 10 8 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21212 * 119.99633 * 0.02562 * 13 12 11 15 15 O 1.34306 * 119.99898 * 179.97438 * 13 12 11 16 16 C 1.34923 * 116.99932 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.38756 * 119.99899 * 180.02562 * 16 15 13 19 19 N 1.31437 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99642 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47327 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46956 * 120.00400 * 20 18 16 23 23 H 1.48502 * 109.47065 * 239.99936 * 20 18 16 24 24 C 1.37026 * 119.64114 * 0.27194 * 10 8 7 25 25 C 1.50700 * 120.91902 * 179.70544 * 24 10 8 26 26 C 1.39994 * 118.15435 * 359.47567 * 24 10 8 27 27 H 1.08997 * 109.47500 * 89.97406 * 1 2 3 28 28 H 1.09003 * 109.46820 * 209.97190 * 1 2 3 29 29 H 1.09001 * 109.47142 * 329.97359 * 1 2 3 30 30 H 1.08994 * 109.46988 * 269.96300 * 5 4 3 31 31 H 1.09001 * 109.46678 * 29.96210 * 5 4 3 32 32 H 1.08994 * 109.47118 * 149.95722 * 5 4 3 33 33 H 1.09008 * 109.46934 * 270.01953 * 9 8 7 34 34 H 1.08995 * 109.47283 * 30.01672 * 9 8 7 35 35 H 1.08998 * 109.47305 * 150.02459 * 9 8 7 36 36 H 1.09001 * 109.46665 * 329.99765 * 11 10 8 37 37 H 1.08993 * 109.47304 * 209.99321 * 11 10 8 38 38 H 1.09001 * 109.46801 * 300.00442 * 12 11 10 39 39 H 1.09001 * 109.46998 * 60.00038 * 12 11 10 40 40 H 0.97003 * 119.99411 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.47292 * 90.00254 * 25 24 10 42 42 H 1.08999 * 109.46807 * 210.00104 * 25 24 10 43 43 H 1.09002 * 109.47224 * 329.99901 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2756 1.0513 0.0000 4 7 3.6193 0.6641 -0.0006 5 6 4.7653 1.5768 -0.0002 6 6 3.6944 -0.7021 -0.0016 7 7 4.7049 -1.5632 -0.0020 8 6 4.5000 -2.8622 -0.0024 9 6 5.6848 -3.7934 -0.0035 10 6 3.2189 -3.3963 -0.0031 11 6 3.0208 -4.8902 -0.0030 12 6 2.9532 -5.3957 1.4396 13 6 2.7558 -6.8897 1.4396 14 8 2.6774 -7.4906 0.3899 15 8 2.6676 -7.5554 2.6028 16 6 2.4917 -8.8912 2.5322 17 1 2.4284 -9.3774 1.5699 18 6 2.3920 -9.6403 3.6960 19 7 2.4686 -9.0484 4.8670 20 14 2.1491 -11.4898 3.5982 21 1 2.0964 -11.9076 2.1742 22 1 3.2814 -12.1741 4.2727 23 1 0.8771 -11.8582 4.2701 24 6 2.1351 -2.5578 -0.0088 25 6 0.7316 -3.1066 -0.0163 26 6 2.3679 -1.1774 -0.0027 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.0496 1.8033 -1.0278 31 1 4.4949 2.4992 0.5137 32 1 5.6038 1.1069 0.5137 33 1 5.9702 -4.0172 -1.0315 34 1 6.5206 -3.3187 0.5104 35 1 5.4207 -4.7181 0.5097 36 1 3.8556 -5.3673 -0.5164 37 1 2.0911 -5.1335 -0.5172 38 1 3.8830 -5.1523 1.9537 39 1 2.1184 -4.9185 1.9530 40 1 2.3985 -9.5720 5.6805 41 1 0.3877 -3.2389 1.0095 42 1 0.0719 -2.4100 -0.5337 43 1 0.7200 -4.0678 -0.5302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010636950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:16 Heat of formation + Delta-G solvation = 4.281904 kcal Electronic energy + Delta-G solvation = -26082.240585 eV Core-core repulsion = 22321.966199 eV Total energy + Delta-G solvation = -3760.274386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77647 -39.27389 -38.64701 -35.66155 -35.10663 -33.72778 -32.86513 -32.12605 -30.47756 -29.81802 -27.75981 -27.57604 -26.25078 -25.23729 -23.76902 -21.74330 -21.23980 -19.68428 -19.56013 -17.72612 -17.68552 -16.99066 -16.30766 -16.06379 -15.74743 -15.00432 -14.72981 -14.38673 -14.10473 -13.91431 -13.86357 -13.73342 -13.43526 -13.28159 -13.06256 -12.79874 -12.71439 -12.56271 -12.54897 -12.32878 -12.08226 -11.81581 -11.63546 -11.49008 -11.38585 -11.19231 -10.83234 -10.71246 -10.40003 -10.35248 -10.00798 -9.77725 -9.45498 -9.02029 -8.79510 -8.57105 -8.11415 -6.39868 -4.07713 0.69058 1.23951 2.02481 2.26532 3.10510 3.19718 3.27052 3.55528 3.60529 3.92280 3.97349 4.13697 4.36494 4.47631 4.63710 4.84328 4.95623 4.99353 5.02604 5.08383 5.14395 5.26855 5.28144 5.37750 5.39397 5.44024 5.44366 5.53111 5.58018 5.60732 5.62264 5.74074 5.85413 5.91945 6.04233 6.09668 6.21283 6.40013 6.48597 6.61083 6.78435 6.81943 7.37256 7.41471 7.89228 7.97044 8.73536 9.09336 9.88158 10.78283 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.002768 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.638204 B =10112.208456 C =10653.276843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.112 3.888 3 N -0.250 5.250 4 N -0.400 5.400 5 C 0.116 3.884 6 C 0.318 3.682 7 N -0.511 5.511 8 C 0.211 3.789 9 C -0.113 4.113 10 C -0.173 4.173 11 C -0.057 4.057 12 C -0.099 4.099 13 C 0.397 3.603 14 O -0.558 6.558 15 O -0.216 6.216 16 C -0.381 4.381 17 H 0.096 0.904 18 C 0.041 3.959 19 N -0.866 5.866 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 C 0.046 3.954 25 C -0.132 4.132 26 C -0.229 4.229 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 18.421 -9.018 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.066 4.066 3 N -0.064 5.064 4 N -0.191 5.191 5 C -0.025 4.025 6 C 0.079 3.921 7 N -0.227 5.227 8 C 0.063 3.937 9 C -0.170 4.170 10 C -0.177 4.177 11 C -0.095 4.095 12 C -0.137 4.137 13 C 0.244 3.756 14 O -0.455 6.455 15 O -0.124 6.124 16 C -0.458 4.458 17 H 0.113 0.887 18 C -0.163 4.163 19 N -0.503 5.503 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.202 1.202 24 C 0.036 3.964 25 C -0.188 4.188 26 C -0.239 4.239 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.112 20.023 -9.037 21.996 hybrid contribution -0.675 -1.750 0.083 1.877 sum 0.437 18.273 -8.954 20.354 Atomic orbital electron populations 1.20412 0.85566 1.04230 1.03596 1.23403 0.96623 0.88461 0.98114 1.76614 0.86440 1.22922 1.20468 1.47919 1.04259 1.01539 1.65352 1.21731 0.84846 0.93044 1.02896 1.18889 0.90319 0.86012 0.96853 1.66560 1.33259 1.02384 1.20516 1.21086 0.94328 0.88544 0.89756 1.20922 0.94702 0.97698 1.03698 1.20103 0.92638 0.97166 1.07757 1.20282 1.04641 0.88252 0.96337 1.21067 1.04373 0.90653 0.97569 1.23169 0.78680 0.90354 0.83395 1.90552 1.51426 1.70297 1.33267 1.83885 1.74630 1.22745 1.31092 1.21262 1.50942 0.78696 0.94853 0.88654 1.25330 0.96374 1.00451 0.94123 1.70003 1.46621 1.36319 0.97360 0.85642 0.78145 0.80745 0.78895 1.18960 1.20212 1.20214 1.19365 0.96433 0.89817 0.90763 1.21107 0.91678 1.02279 1.03719 1.20157 0.93528 0.94093 1.16138 0.89786 0.89390 0.90195 0.91470 0.89692 0.89343 0.89731 0.90215 0.89258 0.89682 0.89680 0.89140 0.89200 0.92183 0.89572 0.90617 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.36 36.01 0.34 -0.28 16 2 C 0.11 1.36 7.44 -80.23 -0.60 0.76 16 3 N -0.25 -3.32 12.40 34.82 0.43 -2.89 16 4 N -0.40 -5.32 4.04 -67.21 -0.27 -5.59 16 5 C 0.12 1.07 11.44 59.85 0.68 1.75 16 6 C 0.32 4.70 7.97 -156.11 -1.24 3.45 16 7 N -0.51 -7.54 10.30 -8.57 -0.09 -7.63 16 8 C 0.21 2.91 6.78 -82.52 -0.56 2.35 16 9 C -0.11 -1.29 9.33 36.00 0.34 -0.95 16 10 C -0.17 -2.36 5.11 -104.85 -0.54 -2.90 16 11 C -0.06 -0.83 3.55 -27.88 -0.10 -0.93 16 12 C -0.10 -1.68 5.65 -27.88 -0.16 -1.84 16 13 C 0.40 9.34 7.91 36.00 0.28 9.63 16 14 O -0.56 -14.20 15.22 -19.05 -0.29 -14.49 16 15 O -0.22 -6.09 9.75 -20.70 -0.20 -6.29 16 16 C -0.38 -11.14 9.65 30.92 0.30 -10.84 16 17 H 0.10 2.80 6.86 -52.49 -0.36 2.44 16 18 C 0.04 1.15 5.49 -17.53 -0.10 1.05 16 19 N -0.87 -25.26 13.67 55.48 0.76 -24.50 16 20 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 C 0.05 0.60 5.91 -104.40 -0.62 -0.02 16 25 C -0.13 -1.35 8.79 36.01 0.32 -1.04 16 26 C -0.23 -3.16 6.16 -105.18 -0.65 -3.81 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.59 6.29 -51.93 -0.33 0.27 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.04 5.77 -51.93 -0.30 0.74 16 36 H 0.08 1.24 6.63 -51.93 -0.34 0.89 16 37 H 0.08 1.24 5.97 -51.93 -0.31 0.93 16 38 H 0.09 1.44 7.38 -51.93 -0.38 1.06 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.62 5.96 -51.93 -0.31 0.31 16 43 H 0.08 0.89 6.03 -51.93 -0.31 0.58 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -35.82 359.23 -7.15 -42.98 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.59 Total: 0.52 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.30 Total: -3.61 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.83 Total: -40.61 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.49 Total: -20.77 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.82 -7.15 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010636950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.257 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds