Wall clock time and date at job start Tue Mar 31 2020 11:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30231 * 126.16836 * 2 1 4 4 N 1.39840 * 110.09248 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.39111 * 180.02562 * 4 3 2 6 6 C 1.36831 * 109.22180 * 0.02562 * 4 3 2 7 7 N 1.32761 * 133.57923 * 180.02562 * 6 4 3 8 8 C 1.31505 * 121.47077 * 179.97438 * 7 6 4 9 9 C 1.50698 * 119.20519 * 179.97438 * 8 7 6 10 10 C 1.38805 * 121.59405 * 0.02562 * 8 7 6 11 11 C 1.50698 * 120.18301 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47184 * 89.99377 * 11 10 8 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21212 * 119.99633 * 0.02562 * 13 12 11 15 15 O 1.34306 * 119.99898 * 179.97438 * 13 12 11 16 16 C 1.34923 * 116.99932 * 180.02562 * 15 13 12 17 17 H 1.07999 * 119.99973 * 0.02562 * 16 15 13 18 18 C 1.38756 * 119.99899 * 180.02562 * 16 15 13 19 19 N 1.31437 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99642 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47327 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46956 * 120.00400 * 20 18 16 23 23 H 1.48502 * 109.47065 * 239.99936 * 20 18 16 24 24 C 1.37026 * 119.64114 * 0.27194 * 10 8 7 25 25 C 1.50700 * 120.91902 * 179.70544 * 24 10 8 26 26 C 1.39994 * 118.15435 * 359.47567 * 24 10 8 27 27 H 1.08997 * 109.47500 * 89.97406 * 1 2 3 28 28 H 1.09003 * 109.46820 * 209.97190 * 1 2 3 29 29 H 1.09001 * 109.47142 * 329.97359 * 1 2 3 30 30 H 1.08994 * 109.46988 * 269.96300 * 5 4 3 31 31 H 1.09001 * 109.46678 * 29.96210 * 5 4 3 32 32 H 1.08994 * 109.47118 * 149.95722 * 5 4 3 33 33 H 1.09008 * 109.46934 * 270.01953 * 9 8 7 34 34 H 1.08995 * 109.47283 * 30.01672 * 9 8 7 35 35 H 1.08998 * 109.47305 * 150.02459 * 9 8 7 36 36 H 1.09001 * 109.46665 * 329.99765 * 11 10 8 37 37 H 1.08993 * 109.47304 * 209.99321 * 11 10 8 38 38 H 1.09001 * 109.46801 * 300.00442 * 12 11 10 39 39 H 1.09001 * 109.46998 * 60.00038 * 12 11 10 40 40 H 0.97003 * 119.99411 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.47292 * 90.00254 * 25 24 10 42 42 H 1.08999 * 109.46807 * 210.00104 * 25 24 10 43 43 H 1.09002 * 109.47224 * 329.99901 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2756 1.0513 0.0000 4 7 3.6193 0.6641 -0.0006 5 6 4.7653 1.5768 -0.0002 6 6 3.6944 -0.7021 -0.0016 7 7 4.7049 -1.5632 -0.0020 8 6 4.5000 -2.8622 -0.0024 9 6 5.6848 -3.7934 -0.0035 10 6 3.2189 -3.3963 -0.0031 11 6 3.0208 -4.8902 -0.0030 12 6 2.9532 -5.3957 1.4396 13 6 2.7558 -6.8897 1.4396 14 8 2.6774 -7.4906 0.3899 15 8 2.6676 -7.5554 2.6028 16 6 2.4917 -8.8912 2.5322 17 1 2.4284 -9.3774 1.5699 18 6 2.3920 -9.6403 3.6960 19 7 2.4686 -9.0484 4.8670 20 14 2.1491 -11.4898 3.5982 21 1 2.0964 -11.9076 2.1742 22 1 3.2814 -12.1741 4.2727 23 1 0.8771 -11.8582 4.2701 24 6 2.1351 -2.5578 -0.0088 25 6 0.7316 -3.1066 -0.0163 26 6 2.3679 -1.1774 -0.0027 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5142 30 1 5.0496 1.8033 -1.0278 31 1 4.4949 2.4992 0.5137 32 1 5.6038 1.1069 0.5137 33 1 5.9702 -4.0172 -1.0315 34 1 6.5206 -3.3187 0.5104 35 1 5.4207 -4.7181 0.5097 36 1 3.8556 -5.3673 -0.5164 37 1 2.0911 -5.1335 -0.5172 38 1 3.8830 -5.1523 1.9537 39 1 2.1184 -4.9185 1.9530 40 1 2.3985 -9.5720 5.6805 41 1 0.3877 -3.2389 1.0095 42 1 0.0719 -2.4100 -0.5337 43 1 0.7200 -4.0678 -0.5302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010636950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:15 Heat of formation + Delta-G solvation = -16.914633 kcal Electronic energy + Delta-G solvation = -26083.159736 eV Core-core repulsion = 22321.966199 eV Total energy + Delta-G solvation = -3761.193537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.75078 -41.01238 -39.88191 -37.39073 -36.32218 -34.86514 -34.25024 -33.80676 -31.63278 -30.59785 -28.70531 -28.59869 -27.69755 -26.67420 -25.03451 -22.74366 -22.40589 -21.34463 -20.47005 -19.82526 -18.69511 -18.55112 -17.62271 -17.05550 -16.94500 -16.57655 -16.43807 -16.17909 -15.19940 -15.02751 -14.67157 -14.59373 -14.55364 -14.34975 -14.06336 -13.93243 -13.65957 -13.60211 -13.49355 -13.35940 -13.33464 -13.18731 -13.04434 -12.82601 -12.47643 -12.37034 -12.30876 -12.13856 -11.92150 -11.91478 -11.75317 -11.03745 -10.89561 -10.66221 -10.47948 -9.79844 -9.11140 -8.50006 -6.29272 -0.28893 0.19164 1.14629 1.33547 1.33826 1.37355 1.55458 1.70388 2.14818 2.55777 2.85681 3.01620 3.04796 3.23369 3.46711 3.61329 3.81427 4.00210 4.06615 4.15018 4.27096 4.34704 4.35059 4.40831 4.49808 4.57916 4.59656 4.70204 4.72433 4.73724 4.79410 4.83916 4.89639 4.91277 4.96365 5.06528 5.16710 5.23697 5.25041 5.38391 5.42267 5.66848 5.83332 5.88131 6.42319 6.73835 6.87634 6.96070 7.83782 8.70956 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.002768 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.638204 B =10112.208456 C =10653.276843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.115 3.885 3 N -0.270 5.270 4 N -0.408 5.408 5 C 0.110 3.890 6 C 0.296 3.704 7 N -0.527 5.527 8 C 0.204 3.796 9 C -0.111 4.111 10 C -0.185 4.185 11 C -0.043 4.043 12 C -0.087 4.087 13 C 0.400 3.600 14 O -0.578 6.578 15 O -0.250 6.250 16 C -0.417 4.417 17 H 0.083 0.917 18 C -0.006 4.006 19 N -0.905 5.905 20 Si 1.015 2.985 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.261 1.261 24 C 0.051 3.949 25 C -0.133 4.133 26 C -0.249 4.249 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.277 0.723 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 18.637 -9.350 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 N -0.084 5.084 4 N -0.198 5.198 5 C -0.031 4.031 6 C 0.057 3.943 7 N -0.244 5.244 8 C 0.056 3.944 9 C -0.168 4.168 10 C -0.189 4.189 11 C -0.081 4.081 12 C -0.125 4.125 13 C 0.248 3.752 14 O -0.476 6.476 15 O -0.158 6.158 16 C -0.492 4.492 17 H 0.101 0.899 18 C -0.206 4.206 19 N -0.543 5.543 20 Si 0.834 3.166 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.186 1.186 24 C 0.041 3.959 25 C -0.189 4.189 26 C -0.258 4.258 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.260 20.281 -9.381 22.347 hybrid contribution -0.394 -1.673 0.118 1.723 sum -0.135 18.608 -9.263 20.786 Atomic orbital electron populations 1.20619 0.82664 1.05433 1.05120 1.24046 0.98283 0.87388 0.96527 1.76597 0.86645 1.23567 1.21605 1.48281 1.05040 1.01513 1.65011 1.21966 0.84017 0.93131 1.03938 1.19273 0.91014 0.86848 0.97171 1.66595 1.33563 1.02700 1.21518 1.21422 0.95108 0.88665 0.89197 1.20956 0.94210 0.97020 1.04614 1.19981 0.93083 0.96360 1.09468 1.20122 1.04683 0.88926 0.94383 1.21178 1.05596 0.85797 0.99888 1.24385 0.76276 0.92507 0.82060 1.90525 1.51799 1.71496 1.33774 1.83911 1.76021 1.22613 1.33262 1.21438 1.53145 0.79653 0.95005 0.89927 1.26501 0.95104 1.05711 0.93272 1.70087 1.47256 1.38685 0.98253 0.84599 0.79006 0.73861 0.79124 1.18731 1.18692 1.18595 1.19649 0.97485 0.89579 0.89140 1.21211 0.90551 1.02643 1.04498 1.20452 0.93736 0.94859 1.16799 0.87929 0.88120 0.89054 0.90346 0.88051 0.89161 0.88367 0.89570 0.89646 0.89856 0.89605 0.87795 0.87605 0.91363 0.88761 0.88259 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.36 71.24 0.67 -0.37 16 2 C 0.12 2.61 7.44 44.77 0.33 2.95 16 3 N -0.27 -6.86 12.40 -43.75 -0.54 -7.40 16 4 N -0.41 -10.59 4.04 -366.55 -1.48 -12.07 16 5 C 0.11 1.93 11.44 127.77 1.46 3.39 16 6 C 0.30 8.60 7.97 134.12 1.07 9.67 16 7 N -0.53 -15.37 10.30 -181.04 -1.86 -17.23 16 8 C 0.20 5.51 6.78 42.74 0.29 5.80 16 9 C -0.11 -2.45 9.33 71.24 0.66 -1.78 16 10 C -0.18 -4.88 5.11 -20.01 -0.10 -4.98 16 11 C -0.04 -1.22 3.55 29.85 0.11 -1.12 16 12 C -0.09 -2.91 5.65 29.85 0.17 -2.74 16 13 C 0.40 18.97 7.91 71.24 0.56 19.53 16 14 O -0.58 -29.74 15.22 20.77 0.32 -29.42 16 15 O -0.25 -14.35 9.75 14.88 0.15 -14.20 16 16 C -0.42 -24.84 9.65 67.94 0.66 -24.19 16 17 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 18 C -0.01 -0.34 5.49 84.88 0.47 0.13 16 19 N -0.90 -53.17 13.67 21.62 0.30 -52.87 16 20 Si 1.01 42.96 29.55 68.60 2.03 44.98 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 24 C 0.05 1.26 5.91 -19.72 -0.12 1.14 16 25 C -0.13 -2.45 8.79 71.24 0.63 -1.83 16 26 C -0.25 -6.58 6.16 -20.23 -0.12 -6.70 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.05 6.29 -2.39 -0.01 1.03 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.94 5.77 -2.39 -0.01 1.92 16 36 H 0.08 2.38 6.63 -2.39 -0.02 2.36 16 37 H 0.09 2.41 5.97 -2.39 -0.01 2.40 16 38 H 0.10 3.24 7.38 -2.39 -0.02 3.22 16 39 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.10 1.34 5.96 -2.39 -0.01 1.32 16 43 H 0.08 1.59 6.03 -2.39 -0.01 1.57 16 Total: -1.00 -78.39 359.23 6.67 -71.72 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.05 Total: 17.61 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.73 Total: -1.11 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.59 Total: -89.58 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: 0.46 Total: -43.62 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -78.39 6.67 -71.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010636950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.806 kcal (2) G-P(sol) polarization free energy of solvation -78.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds