Wall clock time and date at job start Tue Mar 31 2020 11:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30196 * 126.20841 * 2 1 4 4 N 1.39803 * 110.13600 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.33950 * 180.02562 * 4 3 2 6 6 C 1.36617 * 109.32212 * 359.97438 * 4 3 2 7 7 N 1.32943 * 133.25952 * 180.28576 * 6 4 3 8 8 C 1.31180 * 121.85101 * 180.11619 * 7 6 4 9 9 C 1.50693 * 119.31519 * 179.77862 * 8 7 6 10 10 C 1.40240 * 121.36391 * 359.55885 * 8 7 6 11 11 C 1.47562 * 120.40920 * 180.18986 * 10 8 7 12 12 O 1.21486 * 120.00583 * 353.76036 * 11 10 8 13 13 O 1.34734 * 119.99373 * 173.75575 * 11 10 8 14 14 C 1.45200 * 116.99632 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47064 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47096 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47077 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00094 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00110 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47054 * 89.99707 * 21 19 17 23 23 H 1.48500 * 109.47240 * 210.00105 * 21 19 17 24 24 H 1.48505 * 109.47168 * 330.00108 * 21 19 17 25 25 C 1.39566 * 119.17118 * 0.22226 * 10 8 7 26 26 C 1.39631 * 117.94603 * 359.97438 * 25 10 8 27 27 H 1.08998 * 109.47203 * 89.97886 * 1 2 3 28 28 H 1.08999 * 109.47098 * 209.97636 * 1 2 3 29 29 H 1.08997 * 109.47182 * 329.97997 * 1 2 3 30 30 H 1.09001 * 109.47572 * 269.97775 * 5 4 3 31 31 H 1.09006 * 109.47514 * 29.97910 * 5 4 3 32 32 H 1.09006 * 109.47394 * 149.97472 * 5 4 3 33 33 H 1.08998 * 109.47163 * 263.14076 * 9 8 7 34 34 H 1.09004 * 109.47279 * 23.14124 * 9 8 7 35 35 H 1.09007 * 109.47109 * 143.14358 * 9 8 7 36 36 H 1.09005 * 109.46954 * 299.99584 * 14 13 11 37 37 H 1.08999 * 109.47528 * 60.00053 * 14 13 11 38 38 H 1.09001 * 109.47455 * 299.99892 * 15 14 13 39 39 H 1.09007 * 109.46902 * 59.99955 * 15 14 13 40 40 H 1.09005 * 109.47061 * 299.99558 * 16 15 14 41 41 H 1.08999 * 109.47388 * 60.00008 * 16 15 14 42 42 H 0.96992 * 120.00176 * 179.97438 * 20 19 17 43 43 H 1.07997 * 121.02396 * 180.02562 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0505 0.0000 4 7 3.6195 0.6635 0.0006 5 6 4.7645 1.5772 0.0013 6 6 3.6969 -0.7005 0.0016 7 7 4.7152 -1.5552 0.0072 8 6 4.5290 -2.8537 0.0045 9 6 5.7250 -3.7705 0.0062 10 6 3.2401 -3.4063 0.0047 11 6 3.0551 -4.8703 0.0059 12 8 4.0165 -5.6043 -0.1077 13 8 1.8198 -5.3930 0.1329 14 6 1.7129 -6.8410 0.1264 15 6 0.2451 -7.2448 0.2795 16 6 0.1324 -8.7706 0.2720 17 6 -1.3134 -9.1683 0.4221 18 1 -2.0756 -8.4087 0.5142 19 6 -1.6630 -10.5018 0.4430 20 7 -2.9248 -10.8489 0.5746 21 14 -0.3447 -11.8156 0.2846 22 1 0.1546 -12.1812 1.6345 23 1 -0.9194 -13.0168 -0.3728 24 1 0.7789 -11.2933 -0.5340 25 6 2.1347 -2.5543 0.0031 26 6 2.3694 -1.1779 0.0019 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 5.0494 1.8037 -1.0262 31 1 4.4931 2.4996 0.5148 32 1 5.6033 1.1082 0.5159 33 1 5.9414 -4.0873 -1.0141 34 1 6.5872 -3.2423 0.4133 35 1 5.5114 -4.6453 0.6206 36 1 2.0998 -7.2296 -0.8156 37 1 2.2913 -7.2518 0.9539 38 1 -0.1424 -6.8561 1.2213 39 1 -0.3330 -6.8340 -0.5484 40 1 0.5196 -9.1589 -0.6701 41 1 0.7105 -9.1817 1.0995 42 1 -3.1708 -11.7870 0.5889 43 1 1.1288 -2.9476 0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031455973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:25 Heat of formation + Delta-G solvation = 4.028171 kcal Electronic energy + Delta-G solvation = -25334.150935 eV Core-core repulsion = 21573.865546 eV Total energy + Delta-G solvation = -3760.285389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05188 -40.38845 -38.55513 -36.53035 -34.85931 -34.11390 -32.58105 -32.06181 -31.75207 -29.94182 -28.22827 -27.51295 -26.34473 -24.10715 -23.21648 -22.46917 -21.26445 -20.33016 -20.11680 -18.35953 -17.58892 -17.14458 -16.71015 -16.57848 -16.22572 -15.87652 -15.58666 -14.61470 -14.24702 -14.01876 -13.97245 -13.88785 -13.80515 -13.43312 -13.22034 -13.10080 -12.83396 -12.75411 -12.68553 -12.45000 -12.26169 -11.93704 -11.84395 -11.35154 -11.08017 -10.98810 -10.79875 -10.47295 -10.41907 -10.09883 -9.90836 -9.79167 -9.69662 -9.26689 -9.23901 -8.67088 -8.58233 -6.08531 -4.07666 0.33267 0.43282 1.68726 1.96998 2.43752 2.69952 3.28877 3.36726 3.38971 3.39752 3.60983 3.80871 4.00880 4.30046 4.41621 4.43100 4.71974 4.75402 4.82040 4.95024 5.07229 5.14283 5.19672 5.24802 5.31248 5.40280 5.43738 5.45748 5.49993 5.53486 5.58378 5.80931 5.83698 5.96171 6.08520 6.28473 6.36413 6.43502 6.64153 6.77627 7.03527 7.18889 7.30434 7.48961 7.70277 7.81131 8.47893 8.95632 9.52965 11.04580 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002465 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.565509 B =11354.370254 C =12639.390102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.127 3.873 3 N -0.246 5.246 4 N -0.393 5.393 5 C 0.111 3.889 6 C 0.344 3.656 7 N -0.512 5.512 8 C 0.261 3.739 9 C -0.113 4.113 10 C -0.223 4.223 11 C 0.517 3.483 12 O -0.504 6.504 13 O -0.353 6.353 14 C 0.068 3.932 15 C -0.102 4.102 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C 0.077 3.923 26 C -0.247 4.247 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.519 24.541 -1.361 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 N -0.060 5.060 4 N -0.182 5.182 5 C -0.029 4.029 6 C 0.104 3.896 7 N -0.229 5.229 8 C 0.111 3.889 9 C -0.170 4.170 10 C -0.228 4.228 11 C 0.361 3.639 12 O -0.395 6.395 13 O -0.269 6.269 14 C -0.005 4.005 15 C -0.139 4.139 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C 0.049 3.951 26 C -0.257 4.257 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.659 25.981 -1.376 30.366 hybrid contribution -0.053 -1.888 -0.116 1.893 sum 15.605 24.092 -1.492 28.743 Atomic orbital electron populations 1.20375 0.84709 1.04604 1.04171 1.23621 0.97018 0.87975 0.96560 1.76722 0.86147 1.22720 1.20365 1.48072 1.04747 1.01511 1.63865 1.21848 0.84602 0.93092 1.03404 1.19160 0.90333 0.86359 0.93762 1.66652 1.32452 1.02158 1.21622 1.21341 0.93649 0.88444 0.85492 1.21189 0.93153 0.97868 1.04821 1.19679 0.94681 0.91255 1.17203 1.20551 0.81817 0.88246 0.73255 1.90782 1.40712 1.61775 1.46187 1.86525 1.30166 1.27422 1.82811 1.23536 1.00788 0.73903 1.02284 1.21569 0.90665 0.98992 1.02708 1.19521 0.98429 0.90097 0.96766 1.21046 0.91227 0.93153 1.50526 0.90798 1.25022 0.95281 0.98671 0.94476 1.69905 1.16321 1.17319 1.50453 0.86786 0.82424 0.81377 0.78762 1.20208 1.21303 1.18947 1.21448 1.00002 0.89744 0.83863 1.20330 0.93727 0.94644 1.17020 0.89248 0.89223 0.89791 0.90963 0.89265 0.89043 0.89146 0.90754 0.87418 0.91324 0.91324 0.91503 0.91480 0.96255 0.96690 0.92639 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.48 36.01 0.38 -0.11 16 2 C 0.13 1.25 7.44 -80.18 -0.60 0.66 16 3 N -0.25 -2.70 12.39 34.84 0.43 -2.27 16 4 N -0.39 -4.25 4.03 -67.17 -0.27 -4.52 16 5 C 0.11 0.76 11.43 59.84 0.68 1.44 16 6 C 0.34 4.20 7.96 -156.09 -1.24 2.96 16 7 N -0.51 -6.34 10.27 -8.26 -0.08 -6.43 16 8 C 0.26 3.16 6.82 -82.12 -0.56 2.60 16 9 C -0.11 -1.18 8.84 36.00 0.32 -0.86 16 10 C -0.22 -2.77 5.89 -104.85 -0.62 -3.39 16 11 C 0.52 7.35 7.82 34.53 0.27 7.62 16 12 O -0.50 -7.84 13.12 -19.25 -0.25 -8.09 16 13 O -0.35 -5.29 9.55 -40.58 -0.39 -5.68 16 14 C 0.07 1.11 5.48 37.16 0.20 1.31 16 15 C -0.10 -1.92 5.53 -26.73 -0.15 -2.07 16 16 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 17 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 21 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 25 C 0.08 0.84 9.78 -38.57 -0.38 0.47 16 26 C -0.25 -2.81 6.33 -105.20 -0.67 -3.47 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.11 1.23 5.82 -51.92 -0.30 0.93 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.16 1.44 7.70 -52.49 -0.40 1.03 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -33.29 366.78 -7.96 -41.25 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -6.13 Total: -3.64 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.90 Total: -6.23 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.85 Total: -39.84 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.64 Total: -13.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.29 -7.96 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031455973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.281 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds