Wall clock time and date at job start Tue Mar 31 2020 11:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30196 * 126.20841 * 2 1 4 4 N 1.39803 * 110.13600 * 179.97438 * 3 2 1 5 5 C 1.46491 * 125.33950 * 180.02562 * 4 3 2 6 6 C 1.36617 * 109.32212 * 359.97438 * 4 3 2 7 7 N 1.32943 * 133.25952 * 180.28576 * 6 4 3 8 8 C 1.31180 * 121.85101 * 180.11619 * 7 6 4 9 9 C 1.50693 * 119.31519 * 179.77862 * 8 7 6 10 10 C 1.40240 * 121.36391 * 359.55885 * 8 7 6 11 11 C 1.47562 * 120.40920 * 180.18986 * 10 8 7 12 12 O 1.21486 * 120.00583 * 353.76036 * 11 10 8 13 13 O 1.34734 * 119.99373 * 173.75575 * 11 10 8 14 14 C 1.45200 * 116.99632 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47064 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47096 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.47077 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00094 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00110 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47054 * 89.99707 * 21 19 17 23 23 H 1.48500 * 109.47240 * 210.00105 * 21 19 17 24 24 H 1.48505 * 109.47168 * 330.00108 * 21 19 17 25 25 C 1.39566 * 119.17118 * 0.22226 * 10 8 7 26 26 C 1.39631 * 117.94603 * 359.97438 * 25 10 8 27 27 H 1.08998 * 109.47203 * 89.97886 * 1 2 3 28 28 H 1.08999 * 109.47098 * 209.97636 * 1 2 3 29 29 H 1.08997 * 109.47182 * 329.97997 * 1 2 3 30 30 H 1.09001 * 109.47572 * 269.97775 * 5 4 3 31 31 H 1.09006 * 109.47514 * 29.97910 * 5 4 3 32 32 H 1.09006 * 109.47394 * 149.97472 * 5 4 3 33 33 H 1.08998 * 109.47163 * 263.14076 * 9 8 7 34 34 H 1.09004 * 109.47279 * 23.14124 * 9 8 7 35 35 H 1.09007 * 109.47109 * 143.14358 * 9 8 7 36 36 H 1.09005 * 109.46954 * 299.99584 * 14 13 11 37 37 H 1.08999 * 109.47528 * 60.00053 * 14 13 11 38 38 H 1.09001 * 109.47455 * 299.99892 * 15 14 13 39 39 H 1.09007 * 109.46902 * 59.99955 * 15 14 13 40 40 H 1.09005 * 109.47061 * 299.99558 * 16 15 14 41 41 H 1.08999 * 109.47388 * 60.00008 * 16 15 14 42 42 H 0.96992 * 120.00176 * 179.97438 * 20 19 17 43 43 H 1.07997 * 121.02396 * 180.02562 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0505 0.0000 4 7 3.6195 0.6635 0.0006 5 6 4.7645 1.5772 0.0013 6 6 3.6969 -0.7005 0.0016 7 7 4.7152 -1.5552 0.0072 8 6 4.5290 -2.8537 0.0045 9 6 5.7250 -3.7705 0.0062 10 6 3.2401 -3.4063 0.0047 11 6 3.0551 -4.8703 0.0059 12 8 4.0165 -5.6043 -0.1077 13 8 1.8198 -5.3930 0.1329 14 6 1.7129 -6.8410 0.1264 15 6 0.2451 -7.2448 0.2795 16 6 0.1324 -8.7706 0.2720 17 6 -1.3134 -9.1683 0.4221 18 1 -2.0756 -8.4087 0.5142 19 6 -1.6630 -10.5018 0.4430 20 7 -2.9248 -10.8489 0.5746 21 14 -0.3447 -11.8156 0.2846 22 1 0.1546 -12.1812 1.6345 23 1 -0.9194 -13.0168 -0.3728 24 1 0.7789 -11.2933 -0.5340 25 6 2.1347 -2.5543 0.0031 26 6 2.3694 -1.1779 0.0019 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 5.0494 1.8037 -1.0262 31 1 4.4931 2.4996 0.5148 32 1 5.6033 1.1082 0.5159 33 1 5.9414 -4.0873 -1.0141 34 1 6.5872 -3.2423 0.4133 35 1 5.5114 -4.6453 0.6206 36 1 2.0998 -7.2296 -0.8156 37 1 2.2913 -7.2518 0.9539 38 1 -0.1424 -6.8561 1.2213 39 1 -0.3330 -6.8340 -0.5484 40 1 0.5196 -9.1589 -0.6701 41 1 0.7105 -9.1817 1.0995 42 1 -3.1708 -11.7870 0.5889 43 1 1.1288 -2.9476 0.0036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031455973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:24 Heat of formation + Delta-G solvation = -14.787168 kcal Electronic energy + Delta-G solvation = -25334.966829 eV Core-core repulsion = 21573.865546 eV Total energy + Delta-G solvation = -3761.101283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.88059 -41.47485 -39.47023 -37.72359 -35.92726 -35.56001 -33.91262 -33.27260 -32.88004 -30.48905 -29.58543 -28.70891 -27.16882 -25.23868 -24.45011 -23.48134 -22.33823 -21.98594 -20.91575 -19.32789 -18.99438 -18.40262 -18.05628 -17.68525 -17.09457 -16.84208 -16.51126 -16.22864 -15.80267 -14.96188 -14.79798 -14.76214 -14.64965 -14.50015 -14.37510 -14.19990 -13.82775 -13.72013 -13.69076 -13.47022 -13.21813 -13.18057 -12.82095 -12.55644 -12.54565 -12.13529 -11.99386 -11.94728 -11.72838 -11.63648 -11.34930 -11.34547 -11.28201 -10.74529 -10.74141 -10.09133 -9.47724 -8.27271 -6.31765 -0.55574 -0.43828 0.95870 1.20034 1.39315 1.39512 1.41044 1.52425 1.56866 2.38322 2.47620 2.84206 3.02723 3.08203 3.22831 3.43968 3.55774 3.86062 4.04903 4.08413 4.10005 4.24549 4.32128 4.33776 4.45525 4.59538 4.60476 4.69554 4.72259 4.76898 4.78445 4.80680 4.85660 4.92582 5.01012 5.03875 5.18734 5.34481 5.43220 5.54296 5.54958 5.64702 5.67401 6.24668 6.29154 6.62752 6.67072 6.76770 7.32664 8.89131 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.002465 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.565509 B =11354.370254 C =12639.390102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.131 3.869 3 N -0.265 5.265 4 N -0.397 5.397 5 C 0.103 3.897 6 C 0.326 3.674 7 N -0.521 5.521 8 C 0.255 3.745 9 C -0.108 4.108 10 C -0.238 4.238 11 C 0.520 3.480 12 O -0.519 6.519 13 O -0.353 6.353 14 C 0.077 3.923 15 C -0.092 4.092 16 C -0.010 4.010 17 C -0.531 4.531 18 H 0.037 0.963 19 C 0.003 3.997 20 N -0.950 5.950 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.244 1.244 25 C 0.087 3.913 26 C -0.261 4.261 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.266 0.734 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.012 25.218 -1.602 29.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.078 5.078 4 N -0.185 5.185 5 C -0.036 4.036 6 C 0.086 3.914 7 N -0.238 5.238 8 C 0.105 3.895 9 C -0.165 4.165 10 C -0.243 4.243 11 C 0.366 3.634 12 O -0.410 6.410 13 O -0.269 6.269 14 C 0.004 3.996 15 C -0.130 4.130 16 C -0.048 4.048 17 C -0.569 4.569 18 H 0.055 0.945 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.772 3.228 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.167 1.167 25 C 0.060 3.940 26 C -0.271 4.271 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.167 26.708 -1.618 31.791 hybrid contribution -0.584 -1.935 -0.033 2.021 sum 16.583 24.773 -1.651 29.857 Atomic orbital electron populations 1.20568 0.82200 1.05746 1.05373 1.24185 0.98442 0.86994 0.95098 1.76719 0.86414 1.23282 1.21389 1.48447 1.05479 1.01471 1.63141 1.22120 0.83803 0.93199 1.04483 1.19479 0.90841 0.87140 0.93969 1.66681 1.32644 1.02188 1.22256 1.21575 0.94064 0.88654 0.85184 1.21149 0.93135 0.97295 1.04888 1.19603 0.95412 0.90249 1.19064 1.20767 0.81176 0.88809 0.72654 1.90779 1.40953 1.62249 1.47025 1.86497 1.30837 1.26470 1.83110 1.23233 0.98695 0.74892 1.02815 1.21321 0.92700 0.96370 1.02616 1.19458 0.95123 0.92981 0.97225 1.21416 0.93184 0.92568 1.49729 0.94507 1.26008 0.97654 1.01449 0.94235 1.70060 1.18796 1.18007 1.52229 0.85682 0.79742 0.77964 0.79433 1.19175 1.21161 1.16745 1.21629 1.00450 0.89531 0.82361 1.20571 0.93954 0.95172 1.17398 0.87855 0.88013 0.88715 0.89859 0.87650 0.88533 0.88771 0.89386 0.88396 0.90827 0.90758 0.91717 0.91654 0.95598 0.95730 0.92497 0.80452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.48 71.24 0.75 -0.06 16 2 C 0.13 2.39 7.44 44.81 0.33 2.72 16 3 N -0.26 -5.46 12.39 -43.68 -0.54 -6.00 16 4 N -0.40 -8.16 4.03 -366.43 -1.48 -9.64 16 5 C 0.10 1.28 11.43 127.77 1.46 2.74 16 6 C 0.33 7.68 7.96 134.18 1.07 8.74 16 7 N -0.52 -12.46 10.27 -180.04 -1.85 -14.31 16 8 C 0.26 5.98 6.82 43.14 0.29 6.27 16 9 C -0.11 -2.15 8.84 71.23 0.63 -1.52 16 10 C -0.24 -5.66 5.89 -20.01 -0.12 -5.78 16 11 C 0.52 14.12 7.82 70.28 0.55 14.67 16 12 O -0.52 -15.49 13.12 19.88 0.26 -15.22 16 13 O -0.35 -9.98 9.55 -56.44 -0.54 -10.52 16 14 C 0.08 2.36 5.48 71.98 0.39 2.76 16 15 C -0.09 -3.38 5.53 30.59 0.17 -3.21 16 16 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 17 C -0.53 -29.81 9.66 25.60 0.25 -29.57 16 18 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 19 C 0.00 0.19 5.47 84.65 0.46 0.66 16 20 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 21 Si 0.95 43.33 27.47 68.60 1.88 45.22 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 25 C 0.09 1.80 9.78 22.93 0.22 2.02 16 26 C -0.26 -5.61 6.33 -20.24 -0.13 -5.73 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.10 2.17 5.82 -2.38 -0.01 2.16 16 36 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 2.38 8.14 -2.38 -0.02 2.37 16 40 H 0.03 1.12 7.20 -2.38 -0.02 1.10 16 41 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.18 2.86 7.70 -2.91 -0.02 2.83 16 Total: -1.00 -71.59 366.78 5.46 -66.13 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.97 Total: 8.56 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.45 Total: -5.61 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -3.57 Total: -88.55 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.28 Total: -25.75 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.22 kcal Total: -71.59 5.46 -66.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031455973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.342 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds