Wall clock time and date at job start Tue Mar 31 2020 11:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31194 * 119.31649 * 2 1 4 4 C 1.32906 * 121.85615 * 179.70255 * 3 2 1 5 5 C 1.41115 * 120.20628 * 0.53437 * 4 3 2 6 6 C 1.45991 * 106.42538 * 179.66552 * 5 4 3 7 7 N 1.30198 * 107.58287 * 359.76990 * 6 5 4 8 8 N 1.36623 * 133.27035 * 179.60958 * 4 3 2 9 9 C 1.46505 * 125.33427 * 0.71289 * 8 4 3 10 10 C 1.53002 * 109.46549 * 119.72512 * 9 8 4 11 11 C 1.52994 * 109.47111 * 239.72359 * 9 8 4 12 12 C 1.39597 * 119.45403 * 359.47604 * 5 4 3 13 13 C 1.39604 * 117.94337 * 0.25286 * 12 5 4 14 14 C 1.47555 * 120.41633 * 180.02562 * 13 12 5 15 15 O 1.21494 * 120.00030 * 173.73191 * 14 13 12 16 16 O 1.34729 * 120.00189 * 353.72812 * 14 13 12 17 17 C 1.45199 * 117.00357 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47091 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46899 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99517 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99584 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00370 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47316 * 89.99769 * 23 21 19 25 25 H 1.48501 * 109.47107 * 209.99781 * 23 21 19 26 26 H 1.48503 * 109.47200 * 329.99908 * 23 21 19 27 27 H 1.09001 * 109.47064 * 263.37463 * 1 2 3 28 28 H 1.08998 * 109.47126 * 23.37479 * 1 2 3 29 29 H 1.09001 * 109.46971 * 143.37429 * 1 2 3 30 30 H 1.08000 * 126.20468 * 179.76885 * 6 5 4 31 31 H 1.08997 * 109.46817 * 359.72726 * 9 8 4 32 32 H 1.09007 * 109.46866 * 299.99691 * 10 9 8 33 33 H 1.09003 * 109.46701 * 180.02562 * 10 9 8 34 34 H 1.08994 * 109.47538 * 60.00050 * 10 9 8 35 35 H 1.09005 * 109.47400 * 299.99649 * 11 9 8 36 36 H 1.08997 * 109.47507 * 60.00020 * 11 9 8 37 37 H 1.09008 * 109.47048 * 180.02562 * 11 9 8 38 38 H 1.07997 * 121.03099 * 180.27524 * 12 5 4 39 39 H 1.08999 * 109.46898 * 300.00003 * 17 16 14 40 40 H 1.08998 * 109.46860 * 60.00194 * 17 16 14 41 41 H 1.08999 * 109.47362 * 300.00251 * 18 17 16 42 42 H 1.08998 * 109.47196 * 60.00294 * 18 17 16 43 43 H 0.97008 * 120.00016 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1495 1.1439 0.0000 4 6 3.4772 1.2028 0.0059 5 6 4.2405 0.0160 0.0010 6 6 5.6416 0.4263 0.0013 7 7 5.6703 1.7279 0.0010 8 7 4.3687 2.2381 0.0005 9 6 4.0159 3.6600 0.0004 10 6 4.5932 4.3287 1.2496 11 6 4.5932 4.3286 -1.2488 12 6 3.5895 -1.2189 0.0010 13 6 2.1935 -1.2224 0.0006 14 6 1.4497 -2.4968 0.0012 15 8 0.2401 -2.4942 0.1157 16 8 2.1118 -3.6634 -0.1253 17 6 1.3157 -4.8776 -0.1158 18 6 2.2348 -6.0912 -0.2686 19 6 1.4085 -7.3515 -0.2595 20 1 0.3352 -7.2927 -0.1547 21 6 2.0228 -8.5795 -0.3848 22 7 1.3017 -9.6793 -0.3763 23 14 3.8792 -8.6812 -0.5653 24 1 4.5023 -8.7846 0.7787 25 1 4.2335 -9.8788 -1.3687 26 1 4.3776 -7.4609 -1.2494 27 1 -0.3633 -0.1186 1.0208 28 1 -0.3633 0.9433 -0.4077 29 1 -0.3633 -0.8248 -0.6131 30 1 6.4987 -0.2308 0.0018 31 1 2.9310 3.7652 0.0003 32 1 4.1818 3.8523 2.1396 33 1 4.3303 5.3865 1.2498 34 1 5.6780 4.2235 1.2497 35 1 5.6782 4.2235 -1.2487 36 1 4.1821 3.8522 -2.1388 37 1 4.3311 5.3867 -1.2487 38 1 4.1485 -2.1430 0.0018 39 1 0.7736 -4.9493 0.8271 40 1 0.6055 -4.8529 -0.9424 41 1 2.7774 -6.0198 -1.2113 42 1 2.9447 -6.1158 0.5582 43 1 1.7339 -10.5433 -0.4642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046585636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:39 Heat of formation + Delta-G solvation = 6.562626 kcal Electronic energy + Delta-G solvation = -25595.437612 eV Core-core repulsion = 21835.262125 eV Total energy + Delta-G solvation = -3760.175487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.95076 -40.17237 -38.46450 -36.27836 -35.91371 -33.46667 -33.01988 -31.98231 -30.81707 -30.06867 -27.88739 -27.72138 -25.52368 -24.27518 -23.29772 -22.57301 -21.22513 -20.63501 -20.06005 -18.43775 -17.52834 -17.17408 -16.56546 -16.26035 -15.81092 -15.70561 -15.49414 -14.84616 -14.40289 -14.24999 -14.21178 -13.77163 -13.48303 -13.34729 -13.17734 -13.03156 -12.68954 -12.61617 -12.50952 -12.26579 -12.05146 -11.80687 -11.80256 -11.54343 -11.32599 -11.13036 -10.79292 -10.71144 -10.46769 -10.11484 -9.96711 -9.73439 -9.64463 -9.36840 -9.16122 -8.64646 -8.62874 -6.14592 -4.15924 0.46296 0.55973 1.74086 2.12619 2.63239 2.97631 3.26195 3.33897 3.37279 3.53351 3.74544 3.88288 4.23345 4.36254 4.36686 4.47465 4.49047 4.63042 4.74625 4.93474 5.05639 5.09899 5.18938 5.27443 5.29158 5.30178 5.40714 5.57643 5.62338 5.65515 5.70255 5.74771 5.91921 5.93361 5.95250 6.06126 6.22283 6.42205 6.51729 6.76449 7.10821 7.15423 7.19301 7.59722 7.60831 8.06053 8.37697 8.87213 9.44792 10.97912 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.002636 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.977082 B =10618.284668 C =11684.680313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.259 3.741 3 N -0.514 5.514 4 C 0.341 3.659 5 C -0.252 4.252 6 C 0.099 3.901 7 N -0.241 5.241 8 N -0.385 5.385 9 C 0.162 3.838 10 C -0.161 4.161 11 C -0.161 4.161 12 C 0.075 3.925 13 C -0.219 4.219 14 C 0.514 3.486 15 O -0.505 6.505 16 O -0.358 6.358 17 C 0.084 3.916 18 C -0.010 4.010 19 C -0.528 4.528 20 H 0.076 0.924 21 C 0.072 3.928 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.205 0.795 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.024 0.976 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 28.032 0.729 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.110 3.890 3 N -0.230 5.230 4 C 0.102 3.898 5 C -0.261 4.261 6 C -0.100 4.100 7 N -0.052 5.052 8 N -0.175 5.175 9 C 0.061 3.939 10 C -0.219 4.219 11 C -0.219 4.219 12 C 0.047 3.953 13 C -0.225 4.225 14 C 0.358 3.642 15 O -0.396 6.396 16 O -0.274 6.274 17 C 0.012 3.988 18 C -0.047 4.047 19 C -0.565 4.565 20 H 0.094 0.906 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.708 3.292 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.187 1.187 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.222 0.778 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.177 0.823 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.790 29.854 0.738 30.862 hybrid contribution 0.850 -1.718 -0.028 1.917 sum 8.639 28.136 0.710 29.441 Atomic orbital electron populations 1.21190 0.86680 1.04321 1.04824 1.21330 0.97149 0.84957 0.85593 1.66620 1.05707 1.29040 1.21660 1.19183 0.89110 0.87732 0.93820 1.20471 0.94700 0.94162 1.16816 1.25154 0.95553 0.91843 0.97480 1.76660 0.98749 1.11393 1.18351 1.48520 1.00644 1.04975 1.63393 1.21356 1.00870 0.74756 0.96923 1.22150 1.02501 1.00731 0.96508 1.22144 1.02503 1.00715 0.96503 1.21479 0.92681 0.97160 0.84000 1.19748 0.93721 0.92497 1.16538 1.20531 0.85831 0.84385 0.73428 1.90772 1.14805 1.87820 1.46210 1.86511 1.43043 1.15433 1.82458 1.23424 0.94294 0.79101 1.01986 1.19633 0.95980 0.91254 0.97830 1.20832 0.95486 0.88487 1.51735 0.90607 1.24942 0.98460 0.95447 0.94203 1.69896 1.35883 0.97860 1.49792 0.86751 0.85768 0.77986 0.78693 1.20069 1.21200 1.18738 0.89188 0.90889 0.87345 0.77829 0.87388 0.92136 0.90561 0.91166 0.91172 0.92110 0.90559 0.82260 0.91507 0.91475 0.95364 0.95798 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 8.84 36.01 0.32 -1.00 16 2 C 0.26 3.43 6.82 -82.12 -0.56 2.87 16 3 N -0.51 -6.76 10.24 -8.26 -0.08 -6.84 16 4 C 0.34 4.31 7.91 -156.10 -1.23 3.08 16 5 C -0.25 -2.92 6.36 -105.19 -0.67 -3.59 16 6 C 0.10 0.92 12.30 -15.14 -0.19 0.73 16 7 N -0.24 -2.54 12.20 31.88 0.39 -2.15 16 8 N -0.38 -4.21 3.31 -53.89 -0.18 -4.39 16 9 C 0.16 1.33 3.67 -67.93 -0.25 1.08 16 10 C -0.16 -1.09 9.43 37.16 0.35 -0.74 16 11 C -0.16 -1.09 9.43 37.15 0.35 -0.74 16 12 C 0.07 0.89 9.78 -38.57 -0.38 0.52 16 13 C -0.22 -3.04 5.89 -104.85 -0.62 -3.66 16 14 C 0.51 8.42 7.82 34.53 0.27 8.69 16 15 O -0.51 -8.97 13.11 -19.26 -0.25 -9.23 16 16 O -0.36 -6.42 9.55 -40.57 -0.39 -6.80 16 17 C 0.08 1.72 5.41 37.16 0.20 1.92 16 18 C -0.01 -0.22 4.42 -27.88 -0.12 -0.35 16 19 C -0.53 -14.66 9.66 -34.44 -0.33 -14.99 16 20 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 23 Si 0.88 20.97 27.47 -169.99 -4.67 16.30 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.11 1.40 5.82 -51.93 -0.30 1.10 16 30 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.11 0.89 8.03 -51.93 -0.42 0.47 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.16 1.64 7.70 -52.49 -0.40 1.24 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 42 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -32.25 365.90 -7.98 -40.23 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.13 Total: -2.20 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.96 Total: -4.22 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.90 Total: -39.60 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.64 Total: -16.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.67 Total: 16.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.25 -7.98 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.796 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds