Wall clock time and date at job start Tue Mar 31 2020 11:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31194 * 119.31649 * 2 1 4 4 C 1.32906 * 121.85615 * 179.70255 * 3 2 1 5 5 C 1.41115 * 120.20628 * 0.53437 * 4 3 2 6 6 C 1.45991 * 106.42538 * 179.66552 * 5 4 3 7 7 N 1.30198 * 107.58287 * 359.76990 * 6 5 4 8 8 N 1.36623 * 133.27035 * 179.60958 * 4 3 2 9 9 C 1.46505 * 125.33427 * 0.71289 * 8 4 3 10 10 C 1.53002 * 109.46549 * 119.72512 * 9 8 4 11 11 C 1.52994 * 109.47111 * 239.72359 * 9 8 4 12 12 C 1.39597 * 119.45403 * 359.47604 * 5 4 3 13 13 C 1.39604 * 117.94337 * 0.25286 * 12 5 4 14 14 C 1.47555 * 120.41633 * 180.02562 * 13 12 5 15 15 O 1.21494 * 120.00030 * 173.73191 * 14 13 12 16 16 O 1.34729 * 120.00189 * 353.72812 * 14 13 12 17 17 C 1.45199 * 117.00357 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47091 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46899 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99988 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99517 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99584 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00370 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47316 * 89.99769 * 23 21 19 25 25 H 1.48501 * 109.47107 * 209.99781 * 23 21 19 26 26 H 1.48503 * 109.47200 * 329.99908 * 23 21 19 27 27 H 1.09001 * 109.47064 * 263.37463 * 1 2 3 28 28 H 1.08998 * 109.47126 * 23.37479 * 1 2 3 29 29 H 1.09001 * 109.46971 * 143.37429 * 1 2 3 30 30 H 1.08000 * 126.20468 * 179.76885 * 6 5 4 31 31 H 1.08997 * 109.46817 * 359.72726 * 9 8 4 32 32 H 1.09007 * 109.46866 * 299.99691 * 10 9 8 33 33 H 1.09003 * 109.46701 * 180.02562 * 10 9 8 34 34 H 1.08994 * 109.47538 * 60.00050 * 10 9 8 35 35 H 1.09005 * 109.47400 * 299.99649 * 11 9 8 36 36 H 1.08997 * 109.47507 * 60.00020 * 11 9 8 37 37 H 1.09008 * 109.47048 * 180.02562 * 11 9 8 38 38 H 1.07997 * 121.03099 * 180.27524 * 12 5 4 39 39 H 1.08999 * 109.46898 * 300.00003 * 17 16 14 40 40 H 1.08998 * 109.46860 * 60.00194 * 17 16 14 41 41 H 1.08999 * 109.47362 * 300.00251 * 18 17 16 42 42 H 1.08998 * 109.47196 * 60.00294 * 18 17 16 43 43 H 0.97008 * 120.00016 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1495 1.1439 0.0000 4 6 3.4772 1.2028 0.0059 5 6 4.2405 0.0160 0.0010 6 6 5.6416 0.4263 0.0013 7 7 5.6703 1.7279 0.0010 8 7 4.3687 2.2381 0.0005 9 6 4.0159 3.6600 0.0004 10 6 4.5932 4.3287 1.2496 11 6 4.5932 4.3286 -1.2488 12 6 3.5895 -1.2189 0.0010 13 6 2.1935 -1.2224 0.0006 14 6 1.4497 -2.4968 0.0012 15 8 0.2401 -2.4942 0.1157 16 8 2.1118 -3.6634 -0.1253 17 6 1.3157 -4.8776 -0.1158 18 6 2.2348 -6.0912 -0.2686 19 6 1.4085 -7.3515 -0.2595 20 1 0.3352 -7.2927 -0.1547 21 6 2.0228 -8.5795 -0.3848 22 7 1.3017 -9.6793 -0.3763 23 14 3.8792 -8.6812 -0.5653 24 1 4.5023 -8.7846 0.7787 25 1 4.2335 -9.8788 -1.3687 26 1 4.3776 -7.4609 -1.2494 27 1 -0.3633 -0.1186 1.0208 28 1 -0.3633 0.9433 -0.4077 29 1 -0.3633 -0.8248 -0.6131 30 1 6.4987 -0.2308 0.0018 31 1 2.9310 3.7652 0.0003 32 1 4.1818 3.8523 2.1396 33 1 4.3303 5.3865 1.2498 34 1 5.6780 4.2235 1.2497 35 1 5.6782 4.2235 -1.2487 36 1 4.1821 3.8522 -2.1388 37 1 4.3311 5.3867 -1.2487 38 1 4.1485 -2.1430 0.0018 39 1 0.7736 -4.9493 0.8271 40 1 0.6055 -4.8529 -0.9424 41 1 2.7774 -6.0198 -1.2113 42 1 2.9447 -6.1158 0.5582 43 1 1.7339 -10.5433 -0.4642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046585636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:39 Heat of formation + Delta-G solvation = -11.308665 kcal Electronic energy + Delta-G solvation = -25596.212569 eV Core-core repulsion = 21835.262125 eV Total energy + Delta-G solvation = -3760.950444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.83181 -41.43464 -39.47626 -37.64865 -36.62494 -35.37874 -34.10354 -32.90660 -32.67753 -30.93337 -28.87446 -28.25038 -27.23674 -25.42001 -24.01982 -23.60976 -22.66494 -22.20436 -20.82587 -19.52268 -18.96788 -18.43684 -18.02199 -17.58975 -16.82194 -16.75619 -16.51292 -16.21483 -15.50165 -15.40185 -15.20654 -14.81235 -14.66839 -14.56875 -14.35171 -14.11225 -13.99123 -13.36476 -13.22563 -13.21388 -13.17119 -13.06834 -12.86599 -12.51865 -12.46897 -12.43414 -12.31249 -11.86445 -11.78064 -11.67223 -11.51013 -11.39291 -11.31054 -10.77754 -10.70977 -10.06125 -9.52241 -8.30970 -6.38931 -0.50291 -0.38710 0.96129 1.34327 1.41409 1.43247 1.43631 1.55563 1.63621 2.37627 2.52576 2.88752 3.04233 3.08434 3.35448 3.51939 3.60268 3.80255 3.91204 4.03220 4.12504 4.19378 4.24242 4.25435 4.35219 4.63645 4.64864 4.66387 4.68432 4.71223 4.72932 4.76091 4.87322 5.00989 5.05939 5.09891 5.16619 5.26317 5.34415 5.37158 5.54037 5.58392 5.73431 6.19172 6.28759 6.67191 6.67998 6.70890 7.25998 8.85000 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.002636 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.977082 B =10618.284668 C =11684.680313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.254 3.746 3 N -0.522 5.522 4 C 0.324 3.676 5 C -0.261 4.261 6 C 0.113 3.887 7 N -0.254 5.254 8 N -0.386 5.386 9 C 0.152 3.848 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.087 3.913 13 C -0.238 4.238 14 C 0.515 3.485 15 O -0.524 6.524 16 O -0.354 6.354 17 C 0.096 3.904 18 C -0.004 4.004 19 C -0.541 4.541 20 H 0.035 0.965 21 C 0.009 3.991 22 N -0.946 5.946 23 Si 0.954 3.046 24 H -0.263 1.263 25 H -0.284 1.284 26 H -0.240 1.240 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.245 0.755 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 30.007 0.652 31.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.239 5.239 4 C 0.083 3.917 5 C -0.270 4.270 6 C -0.085 4.085 7 N -0.064 5.064 8 N -0.176 5.176 9 C 0.051 3.949 10 C -0.211 4.211 11 C -0.210 4.210 12 C 0.060 3.940 13 C -0.244 4.244 14 C 0.361 3.639 15 O -0.416 6.416 16 O -0.271 6.271 17 C 0.023 3.977 18 C -0.041 4.041 19 C -0.578 4.578 20 H 0.053 0.947 21 C -0.189 4.189 22 N -0.585 5.585 23 Si 0.776 3.224 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.163 1.163 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.261 0.739 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.196 0.804 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.793 31.885 0.663 33.669 hybrid contribution -0.129 -2.211 0.008 2.215 sum 10.664 29.674 0.671 31.539 Atomic orbital electron populations 1.21123 0.86132 1.04517 1.04718 1.21473 0.97680 0.84915 0.85500 1.66634 1.06268 1.28766 1.22255 1.19532 0.89283 0.88983 0.93883 1.20707 0.95887 0.93611 1.16837 1.25829 0.95577 0.91694 0.95442 1.76679 0.98543 1.12102 1.19097 1.48872 1.00496 1.05600 1.62623 1.21635 1.01040 0.73847 0.98330 1.22099 1.01923 1.01949 0.95092 1.22094 1.01922 1.01936 0.95088 1.21655 0.91914 0.98141 0.82307 1.19597 0.94533 0.91090 1.19185 1.20939 0.85835 0.84458 0.72634 1.90773 1.15720 1.87927 1.47167 1.86475 1.42451 1.15152 1.82981 1.22984 0.93632 0.79716 1.01399 1.19472 0.95829 0.90249 0.98577 1.21128 0.94343 0.90922 1.51449 0.94654 1.25978 1.04417 0.94805 0.93663 1.70052 1.38476 0.98708 1.51307 0.85602 0.78546 0.78844 0.79367 1.18822 1.20989 1.16286 0.88988 0.89330 0.88791 0.73859 0.87657 0.93384 0.88072 0.91602 0.91611 0.93367 0.88065 0.80387 0.92174 0.92195 0.94480 0.94509 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 8.84 71.24 0.63 -1.89 16 2 C 0.25 6.61 6.82 43.13 0.29 6.91 16 3 N -0.52 -13.35 10.24 -180.04 -1.84 -15.19 16 4 C 0.32 7.76 7.91 134.20 1.06 8.82 16 5 C -0.26 -5.49 6.36 -20.24 -0.13 -5.62 16 6 C 0.11 1.76 12.30 86.95 1.07 2.83 16 7 N -0.25 -4.78 12.20 -53.07 -0.65 -5.42 16 8 N -0.39 -7.86 3.31 -324.42 -1.07 -8.93 16 9 C 0.15 2.27 3.67 44.99 0.16 2.43 16 10 C -0.15 -1.79 9.43 71.98 0.68 -1.11 16 11 C -0.15 -1.79 9.43 71.98 0.68 -1.11 16 12 C 0.09 1.91 9.78 22.93 0.22 2.14 16 13 C -0.24 -6.40 5.89 -20.01 -0.12 -6.51 16 14 C 0.52 16.68 7.82 70.28 0.55 17.23 16 15 O -0.52 -18.84 13.11 19.86 0.26 -18.58 16 16 O -0.35 -12.30 9.55 -56.39 -0.54 -12.84 16 17 C 0.10 3.91 5.41 71.98 0.39 4.30 16 18 C 0.00 -0.17 4.42 29.85 0.13 -0.04 16 19 C -0.54 -30.56 9.66 25.60 0.25 -30.31 16 20 H 0.04 2.21 7.99 -2.91 -0.02 2.18 16 21 C 0.01 0.52 5.47 84.66 0.46 0.98 16 22 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 23 Si 0.95 42.28 27.47 68.60 1.88 44.17 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 2.48 5.82 -2.39 -0.01 2.47 16 30 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.11 1.61 8.03 -2.39 -0.02 1.60 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.18 3.14 7.70 -2.91 -0.02 3.11 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 42 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 43 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -70.84 365.90 5.64 -65.20 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.96 Total: 10.43 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.34 Total: -0.94 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -3.27 Total: -87.43 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.28 Total: -31.42 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.17 kcal Total: -70.84 5.64 -65.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046585636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.892 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds