Wall clock time and date at job start Tue Mar 31 2020 11:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31218 * 119.86003 * 2 1 4 4 C 1.33979 * 120.81465 * 180.27026 * 3 2 1 5 5 C 1.38865 * 132.57806 * 179.77824 * 4 3 2 6 6 C 1.38661 * 107.64830 * 179.97438 * 5 4 3 7 7 N 1.31417 * 108.99227 * 359.97438 * 6 5 4 8 8 N 1.37158 * 120.53772 * 359.74528 * 4 3 2 9 9 C 1.36526 * 119.79327 * 359.97438 * 8 4 3 10 10 C 1.50701 * 120.43977 * 180.02562 * 9 8 4 11 11 C 1.35522 * 119.11942 * 0.02562 * 9 8 4 12 12 C 1.50703 * 120.27273 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46912 * 89.99935 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00141 * 359.97438 * 14 13 12 16 16 O 1.34226 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.45203 * 116.99798 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46837 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46542 * 180.02562 * 18 17 16 20 20 H 1.07989 * 120.00718 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99391 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00491 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46997 * 90.00011 * 23 21 19 25 25 H 1.48501 * 109.46946 * 209.99754 * 23 21 19 26 26 H 1.48497 * 109.47016 * 330.00056 * 23 21 19 27 27 H 1.08998 * 109.47259 * 270.24014 * 1 2 3 28 28 H 1.09000 * 109.47315 * 30.23899 * 1 2 3 29 29 H 1.08999 * 109.47191 * 150.23786 * 1 2 3 30 30 H 1.08001 * 126.17470 * 0.02562 * 5 4 3 31 31 H 1.07999 * 125.50475 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47083 * 269.97853 * 10 9 8 33 33 H 1.08994 * 109.47114 * 29.98134 * 10 9 8 34 34 H 1.09001 * 109.46839 * 149.98420 * 10 9 8 35 35 H 1.09002 * 109.47152 * 329.99707 * 12 11 9 36 36 H 1.09001 * 109.46980 * 209.99807 * 12 11 9 37 37 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 38 38 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 39 39 H 1.09000 * 109.47246 * 300.00228 * 17 16 14 40 40 H 1.09003 * 109.47398 * 60.00414 * 17 16 14 41 41 H 1.09000 * 109.47218 * 300.00037 * 18 17 16 42 42 H 1.08993 * 109.46973 * 59.99936 * 18 17 16 43 43 H 0.96995 * 120.00517 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1602 1.1380 0.0000 4 6 3.4998 1.1603 -0.0054 5 6 4.4222 2.1984 -0.0107 6 6 5.6892 1.6349 -0.0144 7 7 5.5750 0.3257 -0.0110 8 7 4.2163 -0.0092 -0.0059 9 6 3.5604 -1.2066 -0.0002 10 6 4.3331 -2.5004 0.0000 11 6 2.2052 -1.2162 0.0053 12 6 1.4548 -2.5231 0.0110 13 6 1.2066 -2.9623 1.4555 14 6 0.4556 -4.2688 1.4612 15 8 0.1498 -4.7945 0.4172 16 8 0.1264 -4.8486 2.6262 17 6 -0.5960 -6.1061 2.5557 18 6 -0.8817 -6.6102 3.9719 19 6 -1.6310 -7.9157 3.8986 20 1 -1.8783 -8.3433 2.9383 21 6 -2.0007 -8.5642 5.0579 22 7 -1.7000 -8.0432 6.2274 23 14 -2.9302 -10.1821 4.9673 24 1 -1.9623 -11.3081 4.9405 25 1 -3.8106 -10.3144 6.1558 26 1 -3.7562 -10.2099 3.7336 27 1 -0.3634 0.0043 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 4.1939 3.2540 -0.0110 31 1 6.6195 2.1834 -0.0192 32 1 4.5150 -2.8152 -1.0276 33 1 5.2857 -2.3547 0.5094 34 1 3.7575 -3.2673 0.5184 35 1 2.0435 -3.2824 -0.5036 36 1 0.5000 -2.3960 -0.4992 37 1 2.1614 -3.0893 1.9657 38 1 0.6179 -2.2030 1.9701 39 1 -1.5374 -5.9552 2.0273 40 1 0.0061 -6.8417 2.0224 41 1 0.0595 -6.7610 4.5006 42 1 -1.4840 -5.8745 4.5048 43 1 -1.9598 -8.4996 7.0429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051938205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:58 Heat of formation + Delta-G solvation = 7.355322 kcal Electronic energy + Delta-G solvation = -25323.556810 eV Core-core repulsion = 21563.415697 eV Total energy + Delta-G solvation = -3760.141113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.69609 -40.17526 -39.03220 -36.43040 -35.70780 -34.18621 -33.39134 -31.50086 -30.51662 -30.09279 -28.65210 -28.12033 -25.74787 -24.59437 -22.60140 -22.25606 -21.13720 -21.03107 -20.34933 -18.92778 -17.66459 -16.79420 -16.57808 -16.38886 -16.19196 -15.81343 -15.37380 -14.90455 -14.55369 -14.28774 -14.16581 -13.88450 -13.79417 -13.45876 -13.36380 -13.05465 -12.88367 -12.74321 -12.41300 -12.37682 -12.27597 -12.01962 -11.45007 -11.33640 -11.26417 -11.09469 -11.05209 -10.80476 -10.73750 -10.32983 -10.10444 -9.71290 -9.70687 -9.53026 -9.34164 -8.48558 -8.13609 -6.14439 -4.19137 0.20264 0.53223 1.72353 2.30033 2.45358 2.96849 3.13697 3.25553 3.32053 3.36007 3.44552 3.68860 3.89246 4.28029 4.36660 4.48054 4.61411 4.73254 4.82833 4.87403 4.94094 4.99351 5.12959 5.18176 5.21136 5.22182 5.26303 5.33174 5.40067 5.51778 5.57246 5.69199 5.69971 5.95239 6.02613 6.02803 6.08365 6.25159 6.57675 6.91850 7.12703 7.35561 7.50636 7.56870 7.81762 8.10167 8.20083 8.86511 9.45582 10.96978 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.002098 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.382928 B =13344.718026 C =13610.345202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.222 3.778 3 N -0.474 5.474 4 C 0.265 3.735 5 C -0.273 4.273 6 C 0.089 3.911 7 N -0.317 5.317 8 N -0.312 5.312 9 C 0.201 3.799 10 C -0.125 4.125 11 C -0.190 4.190 12 C -0.056 4.056 13 C -0.115 4.115 14 C 0.456 3.544 15 O -0.518 6.518 16 O -0.357 6.357 17 C 0.075 3.925 18 C 0.024 3.976 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.197 0.803 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.182 18.948 -13.446 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.058 3.942 3 N -0.187 5.187 4 C 0.037 3.963 5 C -0.304 4.304 6 C -0.089 4.089 7 N -0.141 5.141 8 N -0.084 5.084 9 C 0.086 3.914 10 C -0.182 4.182 11 C -0.196 4.196 12 C -0.094 4.094 13 C -0.153 4.153 14 C 0.299 3.701 15 O -0.408 6.408 16 O -0.273 6.273 17 C 0.003 3.997 18 C -0.013 4.013 19 C -0.565 4.565 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.178 0.822 31 H 0.214 0.786 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.548 18.586 -13.526 25.724 hybrid contribution -0.449 -0.785 0.037 0.905 sum 11.099 17.801 -13.489 24.940 Atomic orbital electron populations 1.20975 0.86854 1.04837 1.04608 1.21832 0.97827 0.86768 0.87752 1.68094 1.03938 1.28469 1.18151 1.20768 0.88278 0.86881 1.00340 1.20946 0.89592 0.98718 1.21145 1.23832 0.98998 0.90958 0.95114 1.77849 0.89260 1.15673 1.31322 1.47151 1.07481 1.05775 1.47947 1.20522 0.91247 0.86417 0.93221 1.21094 1.01017 0.91131 1.04929 1.20023 0.91215 0.97947 1.10461 1.20312 1.01434 0.91618 0.96050 1.21366 1.01980 0.93467 0.98472 1.23387 0.77459 0.86675 0.82603 1.90641 1.52040 1.64566 1.33527 1.86532 1.68237 1.39377 1.33154 1.23663 0.93824 0.79244 1.02999 1.19175 0.97937 0.95998 0.88212 1.20970 1.36967 1.05667 0.92939 0.92244 1.24990 0.95895 0.98039 0.95248 1.69967 1.46323 1.39127 0.97380 0.86470 0.79749 0.83350 0.77735 1.20470 1.21035 1.19705 0.88706 0.89438 0.89006 0.82194 0.78632 0.88607 0.89120 0.88288 0.88994 0.88297 0.87802 0.87455 0.92220 0.92265 0.95393 0.95340 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.80 36.00 0.35 -0.42 16 2 C 0.22 2.14 6.83 -82.10 -0.56 1.58 16 3 N -0.47 -5.60 10.40 -8.46 -0.09 -5.69 16 4 C 0.26 3.25 7.92 -155.52 -1.23 2.02 16 5 C -0.27 -2.81 10.91 -39.19 -0.43 -3.23 16 6 C 0.09 0.82 11.94 -17.57 -0.21 0.61 16 7 N -0.32 -3.68 12.52 30.47 0.38 -3.30 16 8 N -0.31 -3.71 3.90 -8.49 -0.03 -3.75 16 9 C 0.20 2.01 6.86 -81.47 -0.56 1.45 16 10 C -0.12 -0.95 9.28 36.01 0.33 -0.61 16 11 C -0.19 -1.73 5.12 -104.84 -0.54 -2.26 16 12 C -0.06 -0.47 3.56 -27.88 -0.10 -0.57 16 13 C -0.12 -1.11 5.66 -27.88 -0.16 -1.27 16 14 C 0.46 6.77 7.96 36.01 0.29 7.06 16 15 O -0.52 -8.83 15.73 -18.75 -0.29 -9.12 16 16 O -0.36 -6.56 10.22 -39.25 -0.40 -6.96 16 17 C 0.08 1.59 5.40 37.16 0.20 1.79 16 18 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 19 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 23 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.51 6.00 -51.93 -0.31 0.20 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.20 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.10 0.64 5.86 -51.93 -0.30 0.34 16 35 H 0.09 0.75 6.66 -51.93 -0.35 0.41 16 36 H 0.10 0.78 5.96 -51.93 -0.31 0.47 16 37 H 0.10 0.88 7.40 -51.93 -0.38 0.50 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 40 H 0.06 1.24 8.13 -51.93 -0.42 0.81 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -34.08 365.37 -8.23 -42.31 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.85 Total: -3.14 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.17 Total: -6.64 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.00 Total: -37.97 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.70 Total: -16.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.08 -8.23 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051938205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.662 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds