Wall clock time and date at job start Tue Mar 31 2020 11:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31218 * 119.86003 * 2 1 4 4 C 1.33979 * 120.81465 * 180.27026 * 3 2 1 5 5 C 1.38865 * 132.57806 * 179.77824 * 4 3 2 6 6 C 1.38661 * 107.64830 * 179.97438 * 5 4 3 7 7 N 1.31417 * 108.99227 * 359.97438 * 6 5 4 8 8 N 1.37158 * 120.53772 * 359.74528 * 4 3 2 9 9 C 1.36526 * 119.79327 * 359.97438 * 8 4 3 10 10 C 1.50701 * 120.43977 * 180.02562 * 9 8 4 11 11 C 1.35522 * 119.11942 * 0.02562 * 9 8 4 12 12 C 1.50703 * 120.27273 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46912 * 89.99935 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 O 1.20824 * 120.00141 * 359.97438 * 14 13 12 16 16 O 1.34226 * 119.99900 * 179.97438 * 14 13 12 17 17 C 1.45203 * 116.99798 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46837 * 180.02562 * 17 16 14 19 19 C 1.50702 * 109.46542 * 180.02562 * 18 17 16 20 20 H 1.07989 * 120.00718 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99391 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00491 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46997 * 90.00011 * 23 21 19 25 25 H 1.48501 * 109.46946 * 209.99754 * 23 21 19 26 26 H 1.48497 * 109.47016 * 330.00056 * 23 21 19 27 27 H 1.08998 * 109.47259 * 270.24014 * 1 2 3 28 28 H 1.09000 * 109.47315 * 30.23899 * 1 2 3 29 29 H 1.08999 * 109.47191 * 150.23786 * 1 2 3 30 30 H 1.08001 * 126.17470 * 0.02562 * 5 4 3 31 31 H 1.07999 * 125.50475 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47083 * 269.97853 * 10 9 8 33 33 H 1.08994 * 109.47114 * 29.98134 * 10 9 8 34 34 H 1.09001 * 109.46839 * 149.98420 * 10 9 8 35 35 H 1.09002 * 109.47152 * 329.99707 * 12 11 9 36 36 H 1.09001 * 109.46980 * 209.99807 * 12 11 9 37 37 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 38 38 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 39 39 H 1.09000 * 109.47246 * 300.00228 * 17 16 14 40 40 H 1.09003 * 109.47398 * 60.00414 * 17 16 14 41 41 H 1.09000 * 109.47218 * 300.00037 * 18 17 16 42 42 H 1.08993 * 109.46973 * 59.99936 * 18 17 16 43 43 H 0.96995 * 120.00517 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1602 1.1380 0.0000 4 6 3.4998 1.1603 -0.0054 5 6 4.4222 2.1984 -0.0107 6 6 5.6892 1.6349 -0.0144 7 7 5.5750 0.3257 -0.0110 8 7 4.2163 -0.0092 -0.0059 9 6 3.5604 -1.2066 -0.0002 10 6 4.3331 -2.5004 0.0000 11 6 2.2052 -1.2162 0.0053 12 6 1.4548 -2.5231 0.0110 13 6 1.2066 -2.9623 1.4555 14 6 0.4556 -4.2688 1.4612 15 8 0.1498 -4.7945 0.4172 16 8 0.1264 -4.8486 2.6262 17 6 -0.5960 -6.1061 2.5557 18 6 -0.8817 -6.6102 3.9719 19 6 -1.6310 -7.9157 3.8986 20 1 -1.8783 -8.3433 2.9383 21 6 -2.0007 -8.5642 5.0579 22 7 -1.7000 -8.0432 6.2274 23 14 -2.9302 -10.1821 4.9673 24 1 -1.9623 -11.3081 4.9405 25 1 -3.8106 -10.3144 6.1558 26 1 -3.7562 -10.2099 3.7336 27 1 -0.3634 0.0043 1.0276 28 1 -0.3634 0.8878 -0.5175 29 1 -0.3633 -0.8921 -0.5101 30 1 4.1939 3.2540 -0.0110 31 1 6.6195 2.1834 -0.0192 32 1 4.5150 -2.8152 -1.0276 33 1 5.2857 -2.3547 0.5094 34 1 3.7575 -3.2673 0.5184 35 1 2.0435 -3.2824 -0.5036 36 1 0.5000 -2.3960 -0.4992 37 1 2.1614 -3.0893 1.9657 38 1 0.6179 -2.2030 1.9701 39 1 -1.5374 -5.9552 2.0273 40 1 0.0061 -6.8417 2.0224 41 1 0.0595 -6.7610 4.5006 42 1 -1.4840 -5.8745 4.5048 43 1 -1.9598 -8.4996 7.0429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051938205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:57 Heat of formation + Delta-G solvation = -11.548551 kcal Electronic energy + Delta-G solvation = -25324.376543 eV Core-core repulsion = 21563.415697 eV Total energy + Delta-G solvation = -3760.960846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.43672 -41.44122 -39.81196 -37.77657 -36.50962 -35.42847 -34.95717 -32.53210 -31.98774 -30.99310 -29.43702 -28.76347 -27.24338 -25.87145 -23.49552 -23.09178 -22.74006 -21.83826 -21.51091 -19.65982 -19.02333 -18.20714 -17.67734 -17.54592 -17.39416 -17.03893 -16.46566 -16.11905 -15.76465 -15.21187 -14.85206 -14.68833 -14.52500 -14.51423 -14.36460 -14.16062 -14.05557 -13.71989 -13.57165 -13.17777 -13.10234 -12.96990 -12.91427 -12.72167 -12.56667 -12.53748 -12.18833 -12.00749 -11.83482 -11.77486 -11.49473 -11.41622 -11.29448 -10.85789 -10.60239 -10.30366 -8.89945 -8.26227 -6.39130 -0.51591 -0.22377 1.00372 1.25308 1.42058 1.43501 1.54482 1.58355 1.83030 2.29428 2.41312 2.75397 3.02239 3.08411 3.21390 3.51337 3.73555 3.84209 4.02382 4.10435 4.18833 4.24724 4.27573 4.29562 4.33765 4.44008 4.48079 4.55023 4.63715 4.72243 4.74629 4.78523 4.88145 4.98394 5.00621 5.06804 5.30877 5.33443 5.39982 5.49264 5.57020 5.61805 5.78570 6.07984 6.38330 6.60693 6.74173 6.81079 7.30820 8.86201 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.002098 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.382928 B =13344.718026 C =13610.345202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.219 3.781 3 N -0.499 5.499 4 C 0.238 3.762 5 C -0.284 4.284 6 C 0.096 3.904 7 N -0.344 5.344 8 N -0.325 5.325 9 C 0.189 3.811 10 C -0.122 4.122 11 C -0.186 4.186 12 C -0.047 4.047 13 C -0.105 4.105 14 C 0.457 3.543 15 O -0.538 6.538 16 O -0.369 6.369 17 C 0.091 3.909 18 C 0.028 3.972 19 C -0.548 4.548 20 H 0.066 0.934 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.972 3.028 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.175 0.825 31 H 0.235 0.765 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.005 0.995 42 H 0.006 0.994 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 18.842 -14.375 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.056 3.944 3 N -0.213 5.213 4 C 0.010 3.990 5 C -0.315 4.315 6 C -0.082 4.082 7 N -0.168 5.168 8 N -0.097 5.097 9 C 0.074 3.926 10 C -0.179 4.179 11 C -0.192 4.192 12 C -0.086 4.086 13 C -0.142 4.142 14 C 0.302 3.698 15 O -0.428 6.428 16 O -0.286 6.286 17 C 0.018 3.982 18 C -0.009 4.009 19 C -0.586 4.586 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.567 5.567 23 Si 0.796 3.204 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.186 1.186 27 H 0.125 0.875 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.193 0.807 31 H 0.251 0.749 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.472 18.489 -14.477 26.135 hybrid contribution -0.371 -0.650 0.296 0.805 sum 11.101 17.839 -14.180 25.348 Atomic orbital electron populations 1.21102 0.84914 1.05698 1.05540 1.22331 0.99086 0.86517 0.86457 1.68141 1.03945 1.29509 1.19700 1.21220 0.88911 0.87723 1.01121 1.21325 0.89834 0.99320 1.21006 1.24480 1.00123 0.90294 0.93276 1.77785 0.89539 1.17039 1.32456 1.47327 1.07551 1.06200 1.48605 1.21003 0.91902 0.86803 0.92863 1.21156 1.00645 0.90343 1.05713 1.20018 0.90903 0.97932 1.10393 1.20267 1.01868 0.91261 0.95173 1.21483 1.02164 0.90697 0.99895 1.24306 0.76829 0.87533 0.81142 1.90635 1.52904 1.65389 1.33891 1.86520 1.68399 1.38285 1.35366 1.23118 0.94410 0.80783 0.99890 1.18990 0.96155 0.95265 0.90472 1.21391 1.37222 1.06599 0.93411 0.91591 1.25963 0.96742 1.01905 0.94792 1.70090 1.47474 1.40909 0.98184 0.85345 0.78444 0.78559 0.78094 1.19622 1.20571 1.18623 0.87545 0.89125 0.87607 0.80739 0.74891 0.87511 0.89701 0.87057 0.88527 0.87491 0.86157 0.85503 0.92017 0.92117 0.97681 0.97563 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.80 71.23 0.70 -0.64 16 2 C 0.22 3.96 6.83 43.14 0.29 4.25 16 3 N -0.50 -11.58 10.40 -180.67 -1.88 -13.46 16 4 C 0.24 5.76 7.92 133.14 1.05 6.82 16 5 C -0.28 -5.66 10.91 22.52 0.25 -5.41 16 6 C 0.10 1.65 11.94 84.86 1.01 2.66 16 7 N -0.34 -7.78 12.52 -57.50 -0.72 -8.50 16 8 N -0.33 -7.59 3.90 -180.77 -0.71 -8.29 16 9 C 0.19 3.59 6.86 41.20 0.28 3.87 16 10 C -0.12 -1.69 9.28 71.24 0.66 -1.03 16 11 C -0.19 -3.10 5.12 -20.00 -0.10 -3.20 16 12 C -0.05 -0.68 3.56 29.85 0.11 -0.58 16 13 C -0.11 -1.78 5.66 29.85 0.17 -1.61 16 14 C 0.46 12.81 7.96 71.24 0.57 13.38 16 15 O -0.54 -17.44 15.73 21.97 0.35 -17.10 16 16 O -0.37 -13.30 10.22 -51.38 -0.53 -13.82 16 17 C 0.09 3.84 5.40 71.98 0.39 4.23 16 18 C 0.03 1.47 5.35 29.85 0.16 1.63 16 19 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 20 H 0.07 3.47 7.74 -2.92 -0.02 3.45 16 21 C 0.00 0.27 5.46 84.66 0.46 0.74 16 22 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 23 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.11 0.91 6.00 -2.39 -0.01 0.90 16 30 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.11 1.22 5.86 -2.39 -0.01 1.21 16 35 H 0.10 1.35 6.66 -2.39 -0.02 1.33 16 36 H 0.11 1.41 5.96 -2.39 -0.01 1.40 16 37 H 0.12 1.72 7.40 -2.39 -0.02 1.71 16 38 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 2.55 8.13 -2.39 -0.02 2.53 16 40 H 0.06 2.52 8.13 -2.39 -0.02 2.50 16 41 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -74.23 365.37 6.09 -68.14 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.03 Total: 7.66 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.23 Total: -4.97 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -3.02 Total: -84.73 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.18 Total: -30.92 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.23 6.09 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051938205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.594 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds