Wall clock time and date at job start Tue Mar 31 2020 11:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30664 * 125.64207 * 2 1 4 4 N 1.39906 * 109.54660 * 179.97438 * 3 2 1 5 5 C 1.36565 * 108.13211 * 0.02562 * 4 3 2 6 6 N 1.33345 * 120.81863 * 180.02562 * 5 4 3 7 7 C 1.31520 * 120.85367 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.94947 * 180.02562 * 7 6 5 9 9 C 1.39954 * 120.09555 * 359.76889 * 7 6 5 10 10 C 1.35761 * 119.34984 * 0.48725 * 9 7 6 11 11 C 1.50703 * 120.41926 * 179.77314 * 10 9 7 12 12 C 1.40720 * 125.64196 * 179.97438 * 2 1 3 13 13 C 1.46396 * 126.55233 * 0.02562 * 12 2 1 14 14 O 1.21641 * 120.00337 * 90.02681 * 13 12 2 15 15 O 1.34895 * 119.99388 * 270.01751 * 13 12 2 16 16 C 1.45202 * 116.99578 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47157 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47162 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47139 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99516 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99995 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46575 * 120.00477 * 23 21 19 26 26 H 1.48499 * 109.47300 * 240.00247 * 23 21 19 27 27 H 1.08999 * 109.47190 * 90.02273 * 1 2 3 28 28 H 1.08998 * 109.47198 * 210.02799 * 1 2 3 29 29 H 1.09006 * 109.46848 * 330.02971 * 1 2 3 30 30 H 1.08996 * 109.47328 * 90.00506 * 8 7 6 31 31 H 1.09004 * 109.46708 * 209.99678 * 8 7 6 32 32 H 1.09003 * 109.47215 * 329.99675 * 8 7 6 33 33 H 1.08003 * 120.32205 * 180.25698 * 9 7 6 34 34 H 1.09002 * 109.47152 * 269.72097 * 11 10 9 35 35 H 1.09001 * 109.46980 * 149.72197 * 11 10 9 36 36 H 1.09004 * 109.47113 * 29.72178 * 11 10 9 37 37 H 1.08998 * 109.47404 * 300.00752 * 16 15 13 38 38 H 1.09004 * 109.47137 * 60.00509 * 16 15 13 39 39 H 1.08998 * 109.47398 * 300.00536 * 17 16 15 40 40 H 1.08997 * 109.46557 * 60.00405 * 17 16 15 41 41 H 1.08998 * 109.47337 * 300.00494 * 18 17 16 42 42 H 1.09004 * 109.47199 * 60.00248 * 18 17 16 43 43 H 0.97004 * 119.99924 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0619 0.0000 4 7 3.6126 0.6740 0.0006 5 6 3.6611 -0.6908 0.0004 6 7 4.8298 -1.3328 0.0014 7 6 5.9646 -0.6680 0.0020 8 6 7.2738 -1.4143 0.0025 9 6 5.9581 0.7315 -0.0031 10 6 4.7716 1.3914 0.0012 11 6 4.7365 2.8980 0.0009 12 6 2.3270 -1.1436 0.0005 13 6 1.8793 -2.5374 0.0006 14 8 1.6941 -3.1169 -1.0528 15 8 1.6723 -3.1791 1.1689 16 6 1.2284 -4.5596 1.0931 17 6 1.0482 -5.1158 2.5070 18 6 0.5810 -6.5705 2.4271 19 6 0.4029 -7.1181 3.8197 20 1 0.6024 -6.4911 4.6761 21 6 -0.0159 -8.4193 4.0005 22 7 -0.2594 -9.1826 2.9576 23 14 -0.2361 -9.0982 5.7268 24 1 0.1008 -8.0462 6.7192 25 1 -1.6465 -9.5228 5.9155 26 1 0.6620 -10.2654 5.9180 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 7.5900 -1.5940 -1.0249 31 1 8.0300 -0.8211 0.5168 32 1 7.1485 -2.3675 0.5162 33 1 6.8878 1.2811 -0.0068 34 1 4.7269 3.2614 1.0286 35 1 3.8388 3.2404 -0.5139 36 1 5.6183 3.2820 -0.5121 37 1 0.2786 -4.6071 0.5605 38 1 1.9731 -5.1520 0.5615 39 1 1.9977 -5.0682 3.0400 40 1 0.3033 -4.5232 3.0381 41 1 -0.3684 -6.6185 1.8939 42 1 1.3262 -7.1628 1.8960 43 1 -0.5537 -10.0981 3.0848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062396914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:20 Heat of formation + Delta-G solvation = 7.201624 kcal Electronic energy + Delta-G solvation = -25486.109210 eV Core-core repulsion = 21725.961433 eV Total energy + Delta-G solvation = -3760.147778 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82067 -39.85275 -38.76302 -36.19029 -35.51762 -33.88532 -33.27201 -31.70156 -31.19502 -29.35327 -28.79009 -27.80398 -26.98457 -24.34323 -22.92830 -22.42166 -21.68388 -20.30564 -19.88657 -18.58965 -17.50430 -17.33175 -16.63820 -16.52044 -15.91676 -15.78961 -15.25712 -14.43406 -14.36399 -14.35190 -14.06792 -13.80305 -13.62622 -13.35129 -13.27035 -13.12725 -13.03482 -12.65561 -12.59396 -12.15559 -11.98478 -11.96456 -11.82280 -11.53926 -11.07411 -10.93763 -10.59962 -10.54444 -10.31017 -10.25478 -10.16654 -9.67273 -9.62160 -9.45073 -9.09248 -8.34261 -8.22119 -5.98873 -4.01392 0.06242 0.43794 1.53500 2.04849 2.34785 2.88143 3.20626 3.30817 3.33172 3.40375 3.45145 3.58081 3.80607 4.31980 4.46428 4.48038 4.64239 4.73715 4.75059 4.81716 5.07063 5.11653 5.13249 5.22033 5.26096 5.31568 5.35298 5.37089 5.52202 5.59921 5.69882 5.75003 5.76576 5.96576 6.12426 6.19212 6.60887 6.63957 6.94161 7.04481 7.07617 7.28759 7.67080 7.78716 8.00172 8.10408 8.42051 9.05179 9.62521 11.12679 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.002533 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.773934 B =11052.665796 C =11792.493761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.169 3.831 3 N -0.311 5.311 4 N -0.307 5.307 5 C 0.318 3.682 6 N -0.470 5.470 7 C 0.219 3.781 8 C -0.110 4.110 9 C -0.230 4.230 10 C 0.203 3.797 11 C -0.119 4.119 12 C -0.265 4.265 13 C 0.557 3.443 14 O -0.501 6.501 15 O -0.349 6.349 16 C 0.067 3.933 17 C -0.108 4.108 18 C 0.024 3.976 19 C -0.519 4.519 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 27.047 -7.844 31.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.008 3.992 3 N -0.135 5.135 4 N -0.076 5.076 5 C 0.088 3.912 6 N -0.184 5.184 7 C 0.057 3.943 8 C -0.167 4.167 9 C -0.254 4.254 10 C 0.086 3.914 11 C -0.176 4.176 12 C -0.280 4.280 13 C 0.399 3.601 14 O -0.388 6.388 15 O -0.265 6.265 16 C -0.006 4.006 17 C -0.146 4.146 18 C -0.014 4.014 19 C -0.557 4.557 20 H 0.076 0.924 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.188 0.812 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.523 27.010 -8.185 31.296 hybrid contribution -0.054 -0.647 0.793 1.025 sum 13.469 26.363 -7.392 30.513 Atomic orbital electron populations 1.20455 0.84533 1.04822 1.04374 1.22390 0.97368 0.87856 0.91589 1.77449 0.82232 1.21043 1.32800 1.46748 1.06422 1.06752 1.47629 1.20109 0.93320 0.80354 0.97428 1.68006 0.95691 1.37019 1.17666 1.22035 0.94341 0.90926 0.86959 1.20879 0.90125 1.01321 1.04356 1.21547 0.97610 0.95211 1.11010 1.20827 0.82154 0.96062 0.92358 1.21023 1.05468 0.86154 1.04920 1.18299 0.89067 0.92456 1.28163 1.19471 0.73448 0.84995 0.82230 1.90855 1.47413 1.67543 1.33026 1.86690 1.77453 1.29269 1.33137 1.23517 0.99460 0.76380 1.01265 1.21752 1.01650 0.99376 0.91788 1.19060 0.96688 0.87924 0.97683 1.21222 1.45097 0.97065 0.92330 0.92412 1.25032 0.95483 0.97075 0.96937 1.69980 1.46364 1.07836 1.29216 0.86501 0.77707 0.78952 0.84645 1.19694 1.20998 1.21000 0.88958 0.89205 0.89390 0.88870 0.89385 0.89100 0.81231 0.88578 0.89093 0.88525 0.91450 0.91482 0.92226 0.92187 0.96187 0.96194 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.26 36.00 0.37 -0.49 16 2 C 0.17 2.36 7.22 -82.15 -0.59 1.77 16 3 N -0.31 -4.15 12.39 33.81 0.42 -3.73 16 4 N -0.31 -3.94 3.86 -8.25 -0.03 -3.98 16 5 C 0.32 4.96 7.90 -155.86 -1.23 3.73 16 6 N -0.47 -6.80 10.39 -8.24 -0.09 -6.88 16 7 C 0.22 2.07 6.83 -82.08 -0.56 1.51 16 8 C -0.11 -0.62 10.19 36.01 0.37 -0.25 16 9 C -0.23 -1.54 9.38 -39.83 -0.37 -1.91 16 10 C 0.20 1.73 6.85 -81.49 -0.56 1.17 16 11 C -0.12 -0.53 10.08 36.01 0.36 -0.17 16 12 C -0.27 -4.46 6.04 -104.67 -0.63 -5.09 16 13 C 0.56 10.65 7.43 34.01 0.25 10.90 16 14 O -0.50 -10.62 16.91 -19.37 -0.33 -10.94 16 15 O -0.35 -6.89 10.23 -41.02 -0.42 -7.31 16 16 C 0.07 1.36 5.48 37.16 0.20 1.56 16 17 C -0.11 -2.39 5.53 -26.73 -0.15 -2.53 16 18 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 19 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 23 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.96 7.97 -51.93 -0.41 0.55 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.17 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.10 0.15 8.09 -51.93 -0.42 -0.27 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -37.42 376.55 -8.43 -45.86 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -6.29 Total: -5.95 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.09 Total: -3.09 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 1.04 Total: -41.16 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.75 Total: -18.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.42 -8.43 -45.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062396914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.057 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds