Wall clock time and date at job start Tue Mar 31 2020 11:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30664 * 125.64207 * 2 1 4 4 N 1.39906 * 109.54660 * 179.97438 * 3 2 1 5 5 C 1.36565 * 108.13211 * 0.02562 * 4 3 2 6 6 N 1.33345 * 120.81863 * 180.02562 * 5 4 3 7 7 C 1.31520 * 120.85367 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.94947 * 180.02562 * 7 6 5 9 9 C 1.39954 * 120.09555 * 359.76889 * 7 6 5 10 10 C 1.35761 * 119.34984 * 0.48725 * 9 7 6 11 11 C 1.50703 * 120.41926 * 179.77314 * 10 9 7 12 12 C 1.40720 * 125.64196 * 179.97438 * 2 1 3 13 13 C 1.46396 * 126.55233 * 0.02562 * 12 2 1 14 14 O 1.21641 * 120.00337 * 90.02681 * 13 12 2 15 15 O 1.34895 * 119.99388 * 270.01751 * 13 12 2 16 16 C 1.45202 * 116.99578 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47157 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47162 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.47139 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99516 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99995 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99927 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46575 * 120.00477 * 23 21 19 26 26 H 1.48499 * 109.47300 * 240.00247 * 23 21 19 27 27 H 1.08999 * 109.47190 * 90.02273 * 1 2 3 28 28 H 1.08998 * 109.47198 * 210.02799 * 1 2 3 29 29 H 1.09006 * 109.46848 * 330.02971 * 1 2 3 30 30 H 1.08996 * 109.47328 * 90.00506 * 8 7 6 31 31 H 1.09004 * 109.46708 * 209.99678 * 8 7 6 32 32 H 1.09003 * 109.47215 * 329.99675 * 8 7 6 33 33 H 1.08003 * 120.32205 * 180.25698 * 9 7 6 34 34 H 1.09002 * 109.47152 * 269.72097 * 11 10 9 35 35 H 1.09001 * 109.46980 * 149.72197 * 11 10 9 36 36 H 1.09004 * 109.47113 * 29.72178 * 11 10 9 37 37 H 1.08998 * 109.47404 * 300.00752 * 16 15 13 38 38 H 1.09004 * 109.47137 * 60.00509 * 16 15 13 39 39 H 1.08998 * 109.47398 * 300.00536 * 17 16 15 40 40 H 1.08997 * 109.46557 * 60.00405 * 17 16 15 41 41 H 1.08998 * 109.47337 * 300.00494 * 18 17 16 42 42 H 1.09004 * 109.47199 * 60.00248 * 18 17 16 43 43 H 0.97004 * 119.99924 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0619 0.0000 4 7 3.6126 0.6740 0.0006 5 6 3.6611 -0.6908 0.0004 6 7 4.8298 -1.3328 0.0014 7 6 5.9646 -0.6680 0.0020 8 6 7.2738 -1.4143 0.0025 9 6 5.9581 0.7315 -0.0031 10 6 4.7716 1.3914 0.0012 11 6 4.7365 2.8980 0.0009 12 6 2.3270 -1.1436 0.0005 13 6 1.8793 -2.5374 0.0006 14 8 1.6941 -3.1169 -1.0528 15 8 1.6723 -3.1791 1.1689 16 6 1.2284 -4.5596 1.0931 17 6 1.0482 -5.1158 2.5070 18 6 0.5810 -6.5705 2.4271 19 6 0.4029 -7.1181 3.8197 20 1 0.6024 -6.4911 4.6761 21 6 -0.0159 -8.4193 4.0005 22 7 -0.2594 -9.1826 2.9576 23 14 -0.2361 -9.0982 5.7268 24 1 0.1008 -8.0462 6.7192 25 1 -1.6465 -9.5228 5.9155 26 1 0.6620 -10.2654 5.9180 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 7.5900 -1.5940 -1.0249 31 1 8.0300 -0.8211 0.5168 32 1 7.1485 -2.3675 0.5162 33 1 6.8878 1.2811 -0.0068 34 1 4.7269 3.2614 1.0286 35 1 3.8388 3.2404 -0.5139 36 1 5.6183 3.2820 -0.5121 37 1 0.2786 -4.6071 0.5605 38 1 1.9731 -5.1520 0.5615 39 1 1.9977 -5.0682 3.0400 40 1 0.3033 -4.5232 3.0381 41 1 -0.3684 -6.6185 1.8939 42 1 1.3262 -7.1628 1.8960 43 1 -0.5537 -10.0981 3.0848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062396914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:19 Heat of formation + Delta-G solvation = -15.780682 kcal Electronic energy + Delta-G solvation = -25487.105798 eV Core-core repulsion = 21725.961433 eV Total energy + Delta-G solvation = -3761.144365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.71560 -41.32928 -39.66098 -37.78366 -36.30473 -35.93578 -34.05615 -33.70968 -32.06089 -30.35255 -29.41265 -28.93227 -28.40248 -25.83930 -24.53668 -23.10637 -22.80448 -22.19387 -21.12807 -19.46030 -18.82993 -18.46657 -18.41296 -17.62107 -17.43314 -17.27260 -16.49383 -15.95081 -15.50892 -15.09208 -15.04952 -14.77789 -14.54933 -14.36622 -14.12461 -14.04639 -13.88668 -13.80735 -13.75966 -13.63344 -13.25282 -13.08898 -12.85727 -12.71483 -12.62386 -12.52058 -12.40477 -12.11139 -11.96173 -11.72123 -11.48688 -11.45205 -11.23884 -11.01305 -10.58444 -10.48469 -9.21585 -8.22064 -6.33780 -0.70067 -0.37253 0.69089 0.90486 1.03498 1.40855 1.41534 1.55278 1.75326 2.13872 2.41277 2.52207 2.77452 3.11502 3.14864 3.58999 3.74658 3.81202 3.92965 3.97554 4.03141 4.10313 4.30804 4.33664 4.37456 4.55188 4.58026 4.60453 4.64584 4.70921 4.76303 4.79155 4.82956 4.85034 5.04135 5.05656 5.15297 5.25026 5.30097 5.41908 5.47687 5.61910 5.78999 6.10297 6.18352 6.46464 6.59272 6.81570 7.35484 8.90552 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.002533 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.773934 B =11052.665796 C =11792.493761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.169 3.831 3 N -0.317 5.317 4 N -0.310 5.310 5 C 0.311 3.689 6 N -0.529 5.529 7 C 0.218 3.782 8 C -0.109 4.109 9 C -0.209 4.209 10 C 0.186 3.814 11 C -0.114 4.114 12 C -0.324 4.324 13 C 0.566 3.434 14 O -0.532 6.532 15 O -0.352 6.352 16 C 0.075 3.925 17 C -0.092 4.092 18 C 0.027 3.973 19 C -0.542 4.542 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.971 3.029 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.277 1.277 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.228 0.772 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.000 1.000 42 H -0.004 1.004 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.299 29.796 -6.709 34.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.007 3.993 3 N -0.141 5.141 4 N -0.079 5.079 5 C 0.078 3.922 6 N -0.245 5.245 7 C 0.060 3.940 8 C -0.166 4.166 9 C -0.231 4.231 10 C 0.070 3.930 11 C -0.170 4.170 12 C -0.339 4.339 13 C 0.409 3.591 14 O -0.422 6.422 15 O -0.269 6.269 16 C 0.002 3.998 17 C -0.129 4.129 18 C -0.010 4.010 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.185 1.185 25 H -0.202 1.202 26 H -0.203 1.203 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.091 0.909 33 H 0.245 0.755 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.155 0.845 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.018 0.982 42 H 0.015 0.985 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.913 29.811 -7.047 34.519 hybrid contribution -0.538 -1.401 0.384 1.549 sum 15.375 28.410 -6.663 32.984 Atomic orbital electron populations 1.20578 0.82695 1.05480 1.05352 1.22786 0.98602 0.87017 0.90846 1.77353 0.82699 1.20655 1.33411 1.47017 1.07246 1.06267 1.47347 1.20167 0.93381 0.81696 0.96954 1.68065 0.96691 1.38659 1.21048 1.22926 0.94162 0.92834 0.84048 1.21093 0.89057 1.00853 1.05598 1.22213 0.99103 0.94039 1.07764 1.21895 0.81289 0.98167 0.91610 1.21209 1.06745 0.82983 1.06087 1.18302 0.90826 0.91452 1.33305 1.19910 0.72095 0.85779 0.81288 1.90812 1.48947 1.68600 1.33797 1.86686 1.77575 1.28552 1.34040 1.23231 0.99446 0.77127 1.00006 1.21458 1.01731 0.96796 0.92942 1.18931 0.95071 0.90390 0.96591 1.21623 1.45402 0.97775 0.93225 0.91812 1.26026 0.94838 0.97381 1.01690 1.70112 1.47006 1.08365 1.31853 0.85313 0.77914 0.78332 0.78965 1.18480 1.20204 1.20278 0.87741 0.90115 0.87036 0.87291 0.85232 0.90938 0.75507 0.87220 0.90382 0.84540 0.91194 0.92241 0.91994 0.91295 0.98159 0.98524 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.26 71.23 0.73 -1.02 16 2 C 0.17 4.88 7.22 43.34 0.31 5.19 16 3 N -0.32 -8.48 12.39 -46.94 -0.58 -9.06 16 4 N -0.31 -7.83 3.86 -180.03 -0.70 -8.53 16 5 C 0.31 9.98 7.90 134.02 1.06 11.04 16 6 N -0.53 -15.53 10.39 -179.98 -1.87 -17.40 16 7 C 0.22 3.70 6.83 43.02 0.29 3.99 16 8 C -0.11 -0.93 10.19 71.24 0.73 -0.21 16 9 C -0.21 -1.96 9.38 22.11 0.21 -1.75 16 10 C 0.19 2.67 6.85 41.29 0.28 2.95 16 11 C -0.11 -0.60 10.08 71.24 0.72 0.12 16 12 C -0.32 -11.50 6.04 -19.90 -0.12 -11.62 16 13 C 0.57 23.02 7.43 69.95 0.52 23.54 16 14 O -0.53 -24.06 16.91 19.38 0.33 -23.73 16 15 O -0.35 -14.62 10.23 -58.09 -0.59 -15.21 16 16 C 0.08 3.21 5.48 71.98 0.39 3.61 16 17 C -0.09 -4.17 5.53 30.59 0.17 -4.00 16 18 C 0.03 1.51 4.97 29.85 0.15 1.66 16 19 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 20 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 21 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 22 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 23 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 1.83 7.97 -2.39 -0.02 1.81 16 29 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.04 8.09 -2.39 -0.02 0.02 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.23 -0.63 8.06 -2.91 -0.02 -0.65 16 34 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.08 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.14 -0.36 8.09 -2.38 -0.02 -0.38 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -86.60 376.55 6.05 -80.55 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.01 Total: 1.72 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.14 Total: 2.33 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -2.86 Total: -92.74 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.27 Total: -38.95 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -86.60 6.05 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062396914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.767 kcal (2) G-P(sol) polarization free energy of solvation -86.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds