Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50708 * 120.51441 * 180.26940 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99840 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99832 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00156 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.46980 * 325.00482 * 18 17 15 20 20 C 1.52996 * 109.47303 * 85.00020 * 18 17 15 21 21 C 1.50702 * 109.47347 * 205.00604 * 18 17 15 22 22 H 1.08001 * 119.99980 * 359.97438 * 21 18 17 23 23 C 1.37870 * 120.00051 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00189 * 359.97438 * 23 21 18 25 25 Si 1.86808 * 119.99995 * 179.97438 * 23 21 18 26 26 H 1.48504 * 109.46809 * 60.00044 * 25 23 21 27 27 H 1.48498 * 109.46940 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46759 * 300.00336 * 25 23 21 29 29 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 30 30 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 31 31 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 32 32 H 1.09002 * 109.46882 * 0.02562 * 11 10 7 33 33 H 1.09000 * 109.46735 * 120.00228 * 11 10 7 34 34 H 1.08995 * 109.47399 * 239.99982 * 11 10 7 35 35 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 36 36 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 37 37 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 38 38 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 39 39 H 0.97002 * 119.99736 * 0.02562 * 17 15 14 40 40 H 1.09003 * 109.47403 * 300.00688 * 20 18 17 41 41 H 1.09004 * 109.46725 * 60.00306 * 20 18 17 42 42 H 1.08997 * 109.47519 * 180.02562 * 20 18 17 43 43 H 0.97000 * 119.99820 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0019 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0956 -4.7522 -0.3912 17 7 0.2276 -4.9084 -2.6003 18 6 -0.5197 -6.1684 -2.6007 19 1 -0.2632 -6.7433 -1.7109 20 6 -2.0206 -5.8712 -2.6005 21 6 -0.1650 -6.9625 -3.8314 22 1 0.5458 -6.5679 -4.5424 23 6 -0.7478 -8.1928 -4.0497 24 7 -1.6129 -8.6736 -3.1837 25 14 -0.3085 -9.1769 -5.5756 26 1 1.1483 -9.4647 -5.5765 27 1 -1.0661 -10.4541 -5.5759 28 1 -0.6591 -8.3936 -6.7875 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 5.3890 -2.3136 0.0029 33 1 4.0503 -3.0787 0.8919 34 1 4.0514 -3.0794 -0.8880 35 1 1.9424 -3.2203 0.5897 36 1 0.4175 -2.3156 0.4342 37 1 0.7140 -2.2388 -2.0266 38 1 2.2389 -3.1435 -1.8710 39 1 0.5380 -4.5283 -3.4370 40 1 -2.2771 -5.2968 -1.7104 41 1 -2.2771 -5.2963 -3.4904 42 1 -2.5766 -6.8086 -2.6004 43 1 -2.0232 -9.5390 -3.3375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -37.400595 kcal Electronic energy + Delta-G solvation = -25724.122211 eV Core-core repulsion = 21962.040336 eV Total energy + Delta-G solvation = -3762.081875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91545 -39.16430 -38.06111 -37.05097 -35.40745 -34.85934 -33.70968 -32.44331 -30.90057 -29.28837 -28.99660 -27.93884 -25.32736 -24.44537 -23.03997 -22.35364 -21.00770 -19.46241 -19.30475 -18.35852 -17.24375 -17.09215 -16.22637 -16.00095 -15.70147 -15.32971 -15.18839 -14.40950 -14.27172 -14.11192 -13.88872 -13.69551 -13.62875 -13.27601 -13.24150 -12.93444 -12.80595 -12.56269 -12.44951 -12.33052 -12.16421 -11.90345 -11.69374 -11.59763 -11.14632 -11.05208 -10.96882 -10.77991 -10.51435 -10.38527 -10.29179 -10.16701 -9.14221 -9.10445 -8.60621 -8.29363 -7.98552 -6.17914 -4.27549 -0.04481 1.32789 2.18773 2.54457 2.72933 3.21473 3.27377 3.27691 3.30886 3.48920 3.74411 3.84041 4.00234 4.08551 4.29313 4.34981 4.64832 4.77368 4.89797 4.92193 5.02056 5.09311 5.14902 5.20569 5.30098 5.33201 5.44470 5.56135 5.61955 5.70350 5.82928 5.97443 6.04527 6.21209 6.39616 6.75177 6.88289 7.08159 7.38696 7.43154 7.48788 7.55968 7.63230 7.84781 8.09209 8.59528 8.71646 9.05068 9.40486 10.87901 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002621 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.435259 B =10679.837222 C =11479.650078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.207 3.793 3 N -0.599 5.599 4 H 0.420 0.580 5 C 0.545 3.455 6 O -0.541 6.541 7 C -0.190 4.190 8 C 0.285 3.715 9 N -0.426 5.426 10 C 0.108 3.892 11 C -0.141 4.141 12 C -0.199 4.199 13 C -0.050 4.050 14 C -0.143 4.143 15 C 0.498 3.502 16 O -0.556 6.556 17 N -0.710 5.710 18 C 0.264 3.736 19 H 0.048 0.952 20 C -0.147 4.147 21 C -0.536 4.536 22 H 0.060 0.940 23 C 0.067 3.933 24 N -0.883 5.883 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.389 0.611 40 H 0.014 0.986 41 H 0.026 0.974 42 H 0.089 0.911 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 16.300 5.518 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.094 3.906 3 N -0.230 5.230 4 H 0.260 0.740 5 C 0.343 3.657 6 O -0.421 6.421 7 C -0.197 4.197 8 C -0.029 4.029 9 N -0.103 5.103 10 C 0.101 3.899 11 C -0.197 4.197 12 C -0.204 4.204 13 C -0.088 4.088 14 C -0.183 4.183 15 C 0.283 3.717 16 O -0.436 6.436 17 N -0.357 5.357 18 C 0.163 3.837 19 H 0.066 0.934 20 C -0.205 4.205 21 C -0.575 4.575 22 H 0.078 0.922 23 C -0.136 4.136 24 N -0.521 5.521 25 Si 0.728 3.272 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.221 0.779 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.108 0.892 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.577 16.367 6.287 17.895 hybrid contribution -0.352 0.019 -1.357 1.402 sum 3.225 16.387 4.930 17.414 Atomic orbital electron populations 1.21343 0.87197 1.05886 1.05265 1.20637 0.95368 0.85094 0.89459 1.43453 1.08490 1.09406 1.61641 0.74040 1.16507 0.80752 0.89766 0.78631 1.91009 1.67637 1.31043 1.52458 1.16567 0.86214 0.92953 1.24013 1.24591 0.91525 0.93523 0.93309 1.81217 1.11654 1.07126 1.10272 1.20607 0.92913 0.94512 0.81862 1.21227 1.00086 0.93406 1.04994 1.18942 0.92265 0.94942 1.14277 1.20193 1.00582 0.91483 0.96588 1.21752 1.01802 0.96512 0.98227 1.20413 0.80630 0.85948 0.84698 1.90665 1.53804 1.67578 1.31550 1.46568 1.55787 1.25963 1.07395 1.18722 0.87717 0.79122 0.98173 0.93379 1.22075 0.99776 1.01945 0.96730 1.21187 1.26053 1.03215 1.06996 0.92151 1.24881 0.94690 0.97275 0.96797 1.69885 1.27936 1.18963 1.35293 0.86523 0.78608 0.79257 0.82803 1.20146 1.21119 1.20164 0.88166 0.89823 0.87505 0.90924 0.88346 0.88374 0.89253 0.89345 0.89385 0.89272 0.77922 0.96661 0.95530 0.89211 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.20 36.01 0.33 -0.08 16 2 C 0.21 1.12 6.80 -81.88 -0.56 0.56 16 3 N -0.60 -3.83 5.22 -10.88 -0.06 -3.89 16 4 H 0.42 1.63 8.75 -40.82 -0.36 1.27 16 5 C 0.54 5.86 7.72 -14.89 -0.12 5.75 16 6 O -0.54 -7.95 17.39 5.01 0.09 -7.86 16 7 C -0.19 -2.02 5.79 -106.17 -0.62 -2.63 16 8 C 0.29 3.77 13.22 -22.47 -0.30 3.47 16 9 N -0.43 -6.45 18.54 41.83 0.78 -5.68 16 10 C 0.11 0.90 5.96 -103.75 -0.62 0.28 16 11 C -0.14 -1.06 8.84 36.01 0.32 -0.74 16 12 C -0.20 -1.39 5.09 -105.05 -0.54 -1.93 16 13 C -0.05 -0.42 3.47 -27.88 -0.10 -0.51 16 14 C -0.14 -1.37 5.59 -27.88 -0.16 -1.53 16 15 C 0.50 8.00 7.79 -10.98 -0.09 7.92 16 16 O -0.56 -11.16 15.64 5.56 0.09 -11.07 16 17 N -0.71 -12.85 5.07 -54.93 -0.28 -13.13 16 18 C 0.26 6.23 2.56 -69.08 -0.18 6.05 16 19 H 0.05 1.32 7.58 -51.93 -0.39 0.93 16 20 C -0.15 -3.39 9.26 37.16 0.34 -3.04 16 21 C -0.54 -13.45 8.73 -34.44 -0.30 -13.75 16 22 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 23 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 24 N -0.88 -23.94 11.32 55.43 0.63 -23.32 16 25 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.11 0.40 6.06 -51.93 -0.31 0.08 16 32 H 0.07 0.61 6.53 -51.93 -0.34 0.27 16 33 H 0.10 0.65 7.57 -51.93 -0.39 0.25 16 34 H 0.10 0.67 6.87 -51.93 -0.36 0.32 16 35 H 0.09 0.82 6.88 -51.93 -0.36 0.47 16 36 H 0.09 0.71 6.27 -51.93 -0.33 0.39 16 37 H 0.09 0.66 7.80 -51.93 -0.41 0.26 16 38 H 0.09 0.75 6.87 -51.93 -0.36 0.39 16 39 H 0.39 5.99 8.54 -40.82 -0.35 5.65 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -34.58 363.76 -6.45 -41.02 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.49 Total: 2.14 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -2.65 Total: 1.44 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 1.07 Total: -46.01 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.17 Total: -18.93 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.58 -6.45 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.621 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds