Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35517 * 119.38283 * 2 1 4 4 H 0.97003 * 119.47891 * 359.97438 * 3 2 1 5 5 C 1.34655 * 121.04801 * 179.70928 * 3 2 1 6 6 O 1.21900 * 120.11123 * 180.26306 * 5 3 2 7 7 C 1.41947 * 119.78413 * 0.52342 * 5 3 2 8 8 C 1.43205 * 120.58087 * 179.76180 * 7 5 3 9 9 N 4.79016 * 137.78869 * 359.95443 * 3 1 2 10 10 C 1.39252 * 118.83176 * 359.48470 * 7 5 3 11 11 C 1.50708 * 120.51441 * 180.26940 * 10 7 5 12 12 C 1.35681 * 119.38757 * 179.97438 * 2 1 3 13 13 C 1.50696 * 119.93595 * 0.04072 * 12 2 1 14 14 C 1.53008 * 109.46802 * 94.97490 * 13 12 2 15 15 C 1.50704 * 109.46823 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99840 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99832 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00156 * 180.02562 * 17 15 14 19 19 H 1.09004 * 109.46980 * 325.00482 * 18 17 15 20 20 C 1.52996 * 109.47303 * 85.00020 * 18 17 15 21 21 C 1.50702 * 109.47347 * 205.00604 * 18 17 15 22 22 H 1.08001 * 119.99980 * 359.97438 * 21 18 17 23 23 C 1.37870 * 120.00051 * 179.97438 * 21 18 17 24 24 N 1.31516 * 120.00189 * 359.97438 * 23 21 18 25 25 Si 1.86808 * 119.99995 * 179.97438 * 23 21 18 26 26 H 1.48504 * 109.46809 * 60.00044 * 25 23 21 27 27 H 1.48498 * 109.46940 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46759 * 300.00336 * 25 23 21 29 29 H 1.09000 * 109.47043 * 270.02148 * 1 2 3 30 30 H 1.08997 * 109.47453 * 30.02052 * 1 2 3 31 31 H 1.09001 * 109.46692 * 150.02765 * 1 2 3 32 32 H 1.09002 * 109.46882 * 0.02562 * 11 10 7 33 33 H 1.09000 * 109.46735 * 120.00228 * 11 10 7 34 34 H 1.08995 * 109.47399 * 239.99982 * 11 10 7 35 35 H 1.08994 * 109.47480 * 214.98117 * 13 12 2 36 36 H 1.09000 * 109.46958 * 334.98160 * 13 12 2 37 37 H 1.08994 * 109.47615 * 300.00544 * 14 13 12 38 38 H 1.09000 * 109.46818 * 60.00584 * 14 13 12 39 39 H 0.97002 * 119.99736 * 0.02562 * 17 15 14 40 40 H 1.09003 * 109.47403 * 300.00688 * 20 18 17 41 41 H 1.09004 * 109.46725 * 60.00306 * 20 18 17 42 42 H 1.08997 * 109.47519 * 180.02562 * 20 18 17 43 43 H 0.97000 * 119.99820 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1719 1.1808 0.0000 4 1 1.6703 2.0111 -0.0004 5 6 3.5179 1.2200 0.0059 6 8 4.0985 2.2918 0.0106 7 6 4.2586 0.0091 0.0009 8 6 5.6904 0.0308 0.0019 9 7 6.8262 0.0480 0.0026 10 6 3.5683 -1.2003 0.0010 11 6 4.3165 -2.5085 0.0019 12 6 2.1728 -1.1822 0.0005 13 6 1.4040 -2.4783 0.0002 14 6 1.2523 -2.9808 -1.4370 15 6 0.4840 -4.2773 -1.4373 16 8 0.0956 -4.7522 -0.3912 17 7 0.2276 -4.9084 -2.6003 18 6 -0.5197 -6.1684 -2.6007 19 1 -0.2632 -6.7433 -1.7109 20 6 -2.0206 -5.8712 -2.6005 21 6 -0.1650 -6.9625 -3.8314 22 1 0.5458 -6.5679 -4.5424 23 6 -0.7478 -8.1928 -4.0497 24 7 -1.6129 -8.6736 -3.1837 25 14 -0.3085 -9.1769 -5.5756 26 1 1.1483 -9.4647 -5.5765 27 1 -1.0661 -10.4541 -5.5759 28 1 -0.6591 -8.3936 -6.7875 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3633 -0.8903 -0.5134 32 1 5.3890 -2.3136 0.0029 33 1 4.0503 -3.0787 0.8919 34 1 4.0514 -3.0794 -0.8880 35 1 1.9424 -3.2203 0.5897 36 1 0.4175 -2.3156 0.4342 37 1 0.7140 -2.2388 -2.0266 38 1 2.2389 -3.1435 -1.8710 39 1 0.5380 -4.5283 -3.4370 40 1 -2.2771 -5.2968 -1.7104 41 1 -2.2771 -5.2963 -3.4904 42 1 -2.5766 -6.8086 -2.6004 43 1 -2.0232 -9.5390 -3.3375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064346307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -61.991841 kcal Electronic energy + Delta-G solvation = -25725.188567 eV Core-core repulsion = 21962.040336 eV Total energy + Delta-G solvation = -3763.148231 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.61514 -40.45112 -38.93824 -37.95779 -36.69062 -36.05324 -34.50671 -34.19698 -31.77646 -30.49578 -29.85883 -28.67558 -27.26659 -25.33874 -23.82811 -22.98583 -22.56551 -20.92320 -20.04784 -19.07425 -18.76887 -17.78915 -17.34767 -17.07682 -16.89063 -16.66989 -16.23976 -15.87881 -14.99853 -14.89844 -14.76029 -14.60287 -14.48047 -14.31090 -14.22689 -14.04009 -14.00579 -13.61015 -13.42864 -13.25970 -13.19701 -12.85816 -12.78708 -12.68852 -12.61952 -12.48933 -12.29485 -12.18897 -12.11456 -11.70560 -11.35155 -11.03117 -10.86728 -10.60071 -10.43728 -9.58455 -9.02510 -8.12783 -6.29257 -0.68493 0.62787 1.42008 1.48356 1.49096 1.56703 1.69948 1.90576 2.04079 2.41042 2.63553 2.83657 2.97086 3.17986 3.38884 3.40332 3.71814 3.86178 4.16069 4.23002 4.34683 4.45306 4.51316 4.63906 4.75918 4.76825 4.83985 4.87993 4.95650 4.97814 5.03155 5.17641 5.20304 5.22036 5.30426 5.45119 5.53784 5.64971 5.71279 5.73540 5.81750 6.01157 6.20006 6.49615 6.80772 6.81816 7.14722 7.39719 7.75057 8.92667 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020249 B = 0.002621 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.435259 B =10679.837222 C =11479.650078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.243 3.757 3 N -0.581 5.581 4 H 0.436 0.564 5 C 0.544 3.456 6 O -0.590 6.590 7 C -0.227 4.227 8 C 0.299 3.701 9 N -0.478 5.478 10 C 0.132 3.868 11 C -0.145 4.145 12 C -0.206 4.206 13 C -0.044 4.044 14 C -0.129 4.129 15 C 0.496 3.504 16 O -0.599 6.599 17 N -0.711 5.711 18 C 0.271 3.729 19 H -0.002 1.002 20 C -0.133 4.133 21 C -0.546 4.546 22 H 0.072 0.928 23 C 0.015 3.985 24 N -0.917 5.917 25 Si 0.965 3.035 26 H -0.272 1.272 27 H -0.289 1.289 28 H -0.265 1.265 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.404 0.596 40 H 0.018 0.982 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 17.457 4.419 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 N -0.211 5.211 4 H 0.278 0.722 5 C 0.345 3.655 6 O -0.475 6.475 7 C -0.235 4.235 8 C -0.014 4.014 9 N -0.156 5.156 10 C 0.125 3.875 11 C -0.201 4.201 12 C -0.211 4.211 13 C -0.082 4.082 14 C -0.169 4.169 15 C 0.284 3.716 16 O -0.481 6.481 17 N -0.360 5.360 18 C 0.167 3.833 19 H 0.016 0.984 20 C -0.192 4.192 21 C -0.584 4.584 22 H 0.090 0.910 23 C -0.185 4.185 24 N -0.556 5.556 25 Si 0.790 3.210 26 H -0.197 1.197 27 H -0.215 1.215 28 H -0.190 1.190 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.239 0.761 40 H 0.037 0.963 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.258 17.563 5.171 18.447 hybrid contribution -0.114 -0.372 -0.946 1.023 sum 2.144 17.191 4.225 17.831 Atomic orbital electron populations 1.21560 0.84376 1.07270 1.06800 1.21085 0.96731 0.84007 0.85277 1.43297 1.07258 1.10669 1.59898 0.72171 1.16513 0.81903 0.88941 0.78183 1.90983 1.68928 1.32520 1.55043 1.16535 0.84991 0.93930 1.28054 1.25088 0.92189 0.92169 0.91920 1.81198 1.13069 1.08653 1.12703 1.20653 0.93443 0.93791 0.79662 1.21305 0.99368 0.93364 1.06028 1.18758 0.91338 0.95111 1.15889 1.20098 1.01006 0.91539 0.95555 1.21763 1.01940 0.93228 0.99969 1.21485 0.79775 0.87271 0.83082 1.90652 1.55402 1.69108 1.32944 1.46335 1.55890 1.24580 1.09193 1.18249 0.88498 0.81077 0.95494 0.98396 1.21883 0.99305 1.00618 0.97420 1.21580 1.25857 1.03527 1.07466 0.90968 1.25732 0.94666 0.98515 0.99562 1.70039 1.29136 1.19250 1.37128 0.85504 0.78240 0.77626 0.79603 1.19723 1.21495 1.18967 0.86299 0.87151 0.87403 0.92169 0.87217 0.87217 0.90267 0.88597 0.86000 0.87356 0.76081 0.96292 0.94201 0.92081 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.06 9.20 71.24 0.66 0.60 16 2 C 0.24 1.59 6.80 41.40 0.28 1.88 16 3 N -0.58 -5.60 5.22 -306.53 -1.60 -7.20 16 4 H 0.44 1.84 8.75 -92.71 -0.81 1.03 16 5 C 0.54 11.09 7.72 85.18 0.66 11.75 16 6 O -0.59 -17.41 17.39 -4.99 -0.09 -17.50 16 7 C -0.23 -4.68 5.79 -20.87 -0.12 -4.80 16 8 C 0.30 8.17 13.22 88.33 1.17 9.34 16 9 N -0.48 -15.20 18.54 19.00 0.35 -14.85 16 10 C 0.13 1.92 5.96 -19.30 -0.11 1.80 16 11 C -0.14 -1.96 8.84 71.24 0.63 -1.33 16 12 C -0.21 -2.15 5.09 -20.14 -0.10 -2.25 16 13 C -0.04 -0.57 3.47 29.85 0.10 -0.47 16 14 C -0.13 -1.99 5.59 29.85 0.17 -1.82 16 15 C 0.50 14.91 7.79 87.66 0.68 15.60 16 16 O -0.60 -23.60 15.64 -3.02 -0.05 -23.65 16 17 N -0.71 -24.58 5.07 -446.10 -2.26 -26.84 16 18 C 0.27 12.77 2.56 44.25 0.11 12.89 16 19 H 0.00 -0.11 7.58 -2.38 -0.02 -0.12 16 20 C -0.13 -6.16 9.26 71.98 0.67 -5.49 16 21 C -0.55 -27.08 8.73 25.60 0.22 -26.86 16 22 H 0.07 3.32 7.74 -2.91 -0.02 3.30 16 23 C 0.02 0.79 5.30 84.65 0.45 1.23 16 24 N -0.92 -50.56 11.32 21.45 0.24 -50.32 16 25 Si 0.97 40.27 29.54 68.60 2.03 42.29 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.11 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H 0.11 0.19 6.06 -2.39 -0.01 0.18 16 32 H 0.06 0.99 6.53 -2.39 -0.02 0.98 16 33 H 0.11 1.26 7.57 -2.39 -0.02 1.25 16 34 H 0.11 1.25 6.87 -2.39 -0.02 1.23 16 35 H 0.08 1.25 6.88 -2.39 -0.02 1.24 16 36 H 0.10 1.16 6.27 -2.39 -0.01 1.15 16 37 H 0.12 1.14 7.80 -2.39 -0.02 1.13 16 38 H 0.11 1.35 6.87 -2.39 -0.02 1.33 16 39 H 0.40 11.37 8.54 -92.71 -0.79 10.58 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 43 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -79.84 363.76 3.57 -76.27 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -0.52 Total: 9.73 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 5.46 Total: 12.05 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -3.27 Total: -99.21 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.13 Total: -41.14 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Total: -79.84 3.57 -76.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.280 kcal (2) G-P(sol) polarization free energy of solvation -79.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds