Wall clock time and date at job start Tue Mar 31 2020 11:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29811 * 126.33550 * 2 1 4 4 O 1.41326 * 109.72533 * 179.97438 * 3 2 1 5 5 C 1.34833 * 109.42267 * 359.97438 * 4 3 2 6 6 N 1.32452 * 133.09864 * 180.02562 * 5 4 3 7 7 C 1.31558 * 122.02767 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.17256 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46963 * 264.99804 * 8 7 6 10 10 C 1.52998 * 109.47306 * 144.99883 * 8 7 6 11 11 C 1.38596 * 121.65559 * 0.26826 * 7 6 5 12 12 C 1.39439 * 119.20465 * 359.49672 * 11 7 6 13 13 C 1.48000 * 121.10898 * 180.25888 * 12 11 7 14 14 O 1.21527 * 120.00477 * 129.79765 * 13 12 11 15 15 N 1.34780 * 119.99731 * 309.79566 * 13 12 11 16 16 C 1.46503 * 120.00149 * 4.65955 * 15 13 12 17 17 C 1.46501 * 119.99831 * 184.65749 * 15 13 12 18 18 C 1.50700 * 109.47053 * 90.00485 * 17 15 13 19 19 H 1.07998 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.37880 * 120.00052 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99484 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46987 * 59.99594 * 22 20 18 24 24 H 1.48498 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47225 * 300.00101 * 22 20 18 26 26 C 1.40528 * 106.85980 * 359.97438 * 5 4 3 27 27 H 1.09005 * 109.46889 * 264.45780 * 1 2 3 28 28 H 1.09001 * 109.46786 * 24.44863 * 1 2 3 29 29 H 1.08994 * 109.47100 * 144.45164 * 1 2 3 30 30 H 1.09002 * 109.47175 * 25.00040 * 8 7 6 31 31 H 1.09001 * 109.47600 * 299.99618 * 9 8 7 32 32 H 1.09005 * 109.46825 * 180.02562 * 9 8 7 33 33 H 1.09005 * 109.47204 * 60.00463 * 9 8 7 34 34 H 1.09001 * 109.47311 * 59.99664 * 10 8 7 35 35 H 1.08996 * 109.47323 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47125 * 300.00567 * 10 8 7 37 37 H 1.08004 * 120.39795 * 179.72469 * 11 7 6 38 38 H 1.09005 * 109.46854 * 84.83020 * 16 15 13 39 39 H 1.08996 * 109.47120 * 204.83499 * 16 15 13 40 40 H 1.08999 * 109.46838 * 324.83470 * 16 15 13 41 41 H 1.09004 * 109.46995 * 210.00064 * 17 15 13 42 42 H 1.08995 * 109.46983 * 329.99835 * 17 15 13 43 43 H 0.97003 * 119.99515 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 0.0006 5 6 3.6966 -0.7050 0.0015 6 7 4.7070 -1.5614 0.0028 7 6 4.5180 -2.8634 0.0041 8 6 5.7147 -3.7793 0.0049 9 6 6.0432 -4.1905 -1.4318 10 6 5.4016 -5.0268 0.8334 11 6 3.2460 -3.4137 -0.0014 12 6 2.1383 -2.5669 0.0023 13 6 0.7612 -3.1092 0.0024 14 8 -0.0501 -2.7073 0.8131 15 7 0.4069 -4.0487 -0.8966 16 6 1.4101 -4.6071 -1.8066 17 6 -0.9815 -4.5116 -0.9638 18 6 -1.7508 -3.6531 -1.9344 19 1 -1.2552 -2.8434 -2.4494 20 6 -3.0876 -3.9007 -2.1642 21 7 -3.6911 -4.8864 -1.5367 22 14 -4.0414 -2.8361 -3.3668 23 1 -3.4218 -2.9332 -4.7130 24 1 -5.4489 -3.3046 -3.4341 25 1 -4.0116 -1.4237 -2.9090 26 6 2.3734 -1.1781 0.0022 27 1 -0.3633 -0.0993 1.0229 28 1 -0.3633 0.9355 -0.4253 29 1 -0.3633 -0.8361 -0.5974 30 1 6.5694 -3.2602 0.4386 31 1 5.1886 -4.7098 -1.8656 32 1 6.9085 -4.8534 -1.4311 33 1 6.2663 -3.3018 -2.0221 34 1 4.5469 -5.5460 0.3998 35 1 6.2673 -5.6891 0.8344 36 1 5.1675 -4.7339 1.8570 37 1 3.1144 -4.4857 -0.0047 38 1 1.9348 -5.4243 -1.3115 39 1 0.9179 -4.9820 -2.7040 40 1 2.1238 -3.8304 -2.0812 41 1 -1.0029 -5.5484 -1.2997 42 1 -1.4364 -4.4403 0.0241 43 1 -4.6314 -5.0608 -1.6986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078541335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:23 Heat of formation + Delta-G solvation = 40.108621 kcal Electronic energy + Delta-G solvation = -27220.217544 eV Core-core repulsion = 23461.496721 eV Total energy + Delta-G solvation = -3758.720823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.12095 -39.78661 -38.82233 -35.38662 -35.15918 -34.67997 -33.01375 -32.12180 -29.75565 -28.57079 -28.02877 -27.46165 -26.35607 -24.84270 -24.17567 -22.92734 -21.23548 -20.42774 -18.86475 -17.98080 -17.52956 -16.87282 -16.70695 -16.42759 -15.65548 -15.24086 -14.88060 -14.57085 -14.35032 -14.06609 -13.85993 -13.79804 -13.29257 -13.18989 -12.95644 -12.79007 -12.64653 -12.40233 -12.32054 -12.22717 -12.02222 -11.75314 -11.44142 -11.35779 -11.31012 -11.17753 -11.05025 -10.92535 -10.69421 -10.32548 -10.04912 -9.82636 -9.51749 -9.20301 -8.98838 -8.56626 -7.93112 -6.18456 -4.24781 0.20789 0.82061 1.90703 2.05187 2.94225 3.23237 3.28388 3.28777 3.34867 3.55561 3.71248 4.05225 4.20115 4.29807 4.36288 4.53702 4.71189 4.82107 4.84650 5.05456 5.16328 5.17986 5.33910 5.36279 5.46449 5.50233 5.52542 5.59765 5.66351 5.67676 5.72094 5.78103 5.81754 5.95987 5.99843 6.03148 6.12368 6.35797 6.80750 7.04667 7.20424 7.29006 7.51462 7.75852 8.04244 8.05851 8.57199 8.80603 9.41157 10.89492 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004612 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.000819 B = 6070.148806 C = 7425.954241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.165 3.835 3 N -0.285 5.285 4 O -0.088 6.088 5 C 0.294 3.706 6 N -0.476 5.476 7 C 0.206 3.794 8 C -0.046 4.046 9 C -0.144 4.144 10 C -0.151 4.151 11 C -0.182 4.182 12 C 0.022 3.978 13 C 0.543 3.457 14 O -0.517 6.517 15 N -0.585 5.585 16 C 0.076 3.924 17 C 0.244 3.756 18 C -0.534 4.534 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.217 4.217 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.157 0.843 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.038 0.962 42 H 0.049 0.951 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 -0.791 1.342 16.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 N -0.034 5.034 4 O -0.090 6.090 5 C 0.111 3.889 6 N -0.197 5.197 7 C 0.063 3.937 8 C -0.065 4.065 9 C -0.201 4.201 10 C -0.208 4.208 11 C -0.202 4.202 12 C 0.009 3.991 13 C 0.327 3.673 14 O -0.393 6.393 15 N -0.316 5.316 16 C -0.068 4.068 17 C 0.126 3.874 18 C -0.573 4.573 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.529 5.529 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.223 4.223 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.175 0.825 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.984 1.077 1.773 17.110 hybrid contribution -1.390 -0.446 -0.750 1.641 sum 15.594 0.631 1.023 15.640 Atomic orbital electron populations 1.20671 0.83081 1.05008 1.05872 1.24651 0.98768 0.88720 0.89373 1.80085 0.83873 1.17072 1.22380 1.89219 1.23713 1.14795 1.81272 1.20284 0.89132 0.86491 0.92976 1.66275 1.32923 1.02278 1.18192 1.21258 0.94524 0.88015 0.89912 1.20175 0.94299 0.93956 0.98108 1.21838 1.02212 1.01909 0.94181 1.21977 1.02568 0.96336 0.99966 1.22195 0.91238 1.01839 1.04963 1.20297 0.95957 0.91110 0.91731 1.17933 0.85565 0.80917 0.82886 1.90794 1.50960 1.59222 1.38374 1.48151 1.12496 1.37965 1.32970 1.21869 0.92119 0.97917 0.94852 1.19442 0.73847 0.95051 0.99075 1.21328 0.94935 1.16043 1.24992 0.92433 1.24908 0.97347 0.95322 0.96156 1.69914 1.11627 1.29479 1.41889 0.86574 0.78915 0.80832 0.81245 1.20184 1.21062 1.20024 1.21237 0.93269 0.94426 1.13413 0.87740 0.89874 0.87740 0.88486 0.91932 0.91343 0.92031 0.91676 0.91237 0.92021 0.82533 0.93143 0.89968 0.92491 0.94423 0.93278 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 8.90 36.01 0.32 -1.10 16 2 C 0.17 2.82 7.46 -80.24 -0.60 2.22 16 3 N -0.29 -4.95 12.81 34.84 0.45 -4.50 16 4 O -0.09 -1.54 12.06 7.66 0.09 -1.45 16 5 C 0.29 4.95 8.64 -16.42 -0.14 4.80 16 6 N -0.48 -7.13 10.25 -9.24 -0.09 -7.22 16 7 C 0.21 2.52 5.79 -82.58 -0.48 2.05 16 8 C -0.05 -0.39 3.21 -91.77 -0.29 -0.69 16 9 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 10 C -0.15 -1.04 8.62 37.16 0.32 -0.72 16 11 C -0.18 -2.33 6.99 -39.00 -0.27 -2.61 16 12 C 0.02 0.36 4.88 -104.46 -0.51 -0.15 16 13 C 0.54 10.49 6.32 -12.26 -0.08 10.42 16 14 O -0.52 -11.59 14.43 5.34 0.08 -11.52 16 15 N -0.58 -11.24 2.86 -184.02 -0.53 -11.77 16 16 C 0.08 1.09 9.11 59.85 0.55 1.64 16 17 C 0.24 5.81 5.17 -5.19 -0.03 5.78 16 18 C -0.53 -13.90 9.39 -34.44 -0.32 -14.23 16 19 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 20 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -24.88 13.29 55.43 0.74 -24.14 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.22 -3.72 6.17 -104.83 -0.65 -4.37 16 27 H 0.10 1.64 8.06 -51.93 -0.42 1.22 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.92 6.63 -51.93 -0.34 1.58 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.43 6.46 -51.93 -0.34 0.09 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.16 1.64 4.74 -52.48 -0.25 1.39 16 38 H 0.05 0.57 7.18 -51.93 -0.37 0.19 16 39 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 40 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 41 H 0.04 0.90 8.07 -51.93 -0.42 0.49 16 42 H 0.05 1.32 7.36 -51.93 -0.38 0.93 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -30.82 357.82 -6.61 -37.42 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.77 Total: -1.79 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.94 Total: 4.01 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.56 Total: -47.64 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.17 Total: -12.97 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.82 -6.61 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078541335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.532 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds