Wall clock time and date at job start Tue Mar 31 2020 11:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29811 * 126.33550 * 2 1 4 4 O 1.41326 * 109.72533 * 179.97438 * 3 2 1 5 5 C 1.34833 * 109.42267 * 359.97438 * 4 3 2 6 6 N 1.32452 * 133.09864 * 180.02562 * 5 4 3 7 7 C 1.31558 * 122.02767 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.17256 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46963 * 264.99804 * 8 7 6 10 10 C 1.52998 * 109.47306 * 144.99883 * 8 7 6 11 11 C 1.38596 * 121.65559 * 0.26826 * 7 6 5 12 12 C 1.39439 * 119.20465 * 359.49672 * 11 7 6 13 13 C 1.48000 * 121.10898 * 180.25888 * 12 11 7 14 14 O 1.21527 * 120.00477 * 129.79765 * 13 12 11 15 15 N 1.34780 * 119.99731 * 309.79566 * 13 12 11 16 16 C 1.46503 * 120.00149 * 4.65955 * 15 13 12 17 17 C 1.46501 * 119.99831 * 184.65749 * 15 13 12 18 18 C 1.50700 * 109.47053 * 90.00485 * 17 15 13 19 19 H 1.07998 * 119.99658 * 359.97438 * 18 17 15 20 20 C 1.37880 * 120.00052 * 180.02562 * 18 17 15 21 21 N 1.31519 * 119.99484 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00195 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46987 * 59.99594 * 22 20 18 24 24 H 1.48498 * 109.47285 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47225 * 300.00101 * 22 20 18 26 26 C 1.40528 * 106.85980 * 359.97438 * 5 4 3 27 27 H 1.09005 * 109.46889 * 264.45780 * 1 2 3 28 28 H 1.09001 * 109.46786 * 24.44863 * 1 2 3 29 29 H 1.08994 * 109.47100 * 144.45164 * 1 2 3 30 30 H 1.09002 * 109.47175 * 25.00040 * 8 7 6 31 31 H 1.09001 * 109.47600 * 299.99618 * 9 8 7 32 32 H 1.09005 * 109.46825 * 180.02562 * 9 8 7 33 33 H 1.09005 * 109.47204 * 60.00463 * 9 8 7 34 34 H 1.09001 * 109.47311 * 59.99664 * 10 8 7 35 35 H 1.08996 * 109.47323 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47125 * 300.00567 * 10 8 7 37 37 H 1.08004 * 120.39795 * 179.72469 * 11 7 6 38 38 H 1.09005 * 109.46854 * 84.83020 * 16 15 13 39 39 H 1.08996 * 109.47120 * 204.83499 * 16 15 13 40 40 H 1.08999 * 109.46838 * 324.83470 * 16 15 13 41 41 H 1.09004 * 109.46995 * 210.00064 * 17 15 13 42 42 H 1.08995 * 109.46983 * 329.99835 * 17 15 13 43 43 H 0.97003 * 119.99515 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0457 0.0000 4 8 3.6305 0.6417 0.0006 5 6 3.6966 -0.7050 0.0015 6 7 4.7070 -1.5614 0.0028 7 6 4.5180 -2.8634 0.0041 8 6 5.7147 -3.7793 0.0049 9 6 6.0432 -4.1905 -1.4318 10 6 5.4016 -5.0268 0.8334 11 6 3.2460 -3.4137 -0.0014 12 6 2.1383 -2.5669 0.0023 13 6 0.7612 -3.1092 0.0024 14 8 -0.0501 -2.7073 0.8131 15 7 0.4069 -4.0487 -0.8966 16 6 1.4101 -4.6071 -1.8066 17 6 -0.9815 -4.5116 -0.9638 18 6 -1.7508 -3.6531 -1.9344 19 1 -1.2552 -2.8434 -2.4494 20 6 -3.0876 -3.9007 -2.1642 21 7 -3.6911 -4.8864 -1.5367 22 14 -4.0414 -2.8361 -3.3668 23 1 -3.4218 -2.9332 -4.7130 24 1 -5.4489 -3.3046 -3.4341 25 1 -4.0116 -1.4237 -2.9090 26 6 2.3734 -1.1781 0.0022 27 1 -0.3633 -0.0993 1.0229 28 1 -0.3633 0.9355 -0.4253 29 1 -0.3633 -0.8361 -0.5974 30 1 6.5694 -3.2602 0.4386 31 1 5.1886 -4.7098 -1.8656 32 1 6.9085 -4.8534 -1.4311 33 1 6.2663 -3.3018 -2.0221 34 1 4.5469 -5.5460 0.3998 35 1 6.2673 -5.6891 0.8344 36 1 5.1675 -4.7339 1.8570 37 1 3.1144 -4.4857 -0.0047 38 1 1.9348 -5.4243 -1.3115 39 1 0.9179 -4.9820 -2.7040 40 1 2.1238 -3.8304 -2.0812 41 1 -1.0029 -5.5484 -1.2997 42 1 -1.4364 -4.4403 0.0241 43 1 -4.6314 -5.0608 -1.6986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078541335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:23 Heat of formation + Delta-G solvation = 19.893252 kcal Electronic energy + Delta-G solvation = -27221.094148 eV Core-core repulsion = 23461.496721 eV Total energy + Delta-G solvation = -3759.597427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.37656 -41.12446 -40.13462 -36.81092 -36.18811 -35.96468 -34.84918 -33.54177 -30.88027 -29.93037 -29.72824 -28.04732 -27.67752 -26.28436 -25.30317 -24.52333 -22.52239 -21.46066 -20.28248 -19.15237 -18.78368 -18.62071 -18.23346 -17.73951 -17.18812 -16.60267 -16.28924 -16.02600 -15.35028 -15.26645 -14.92850 -14.79117 -14.56941 -14.50052 -14.40447 -14.13154 -13.92770 -13.68945 -13.53717 -13.46913 -13.11661 -12.87248 -12.86297 -12.55850 -12.54320 -12.45609 -12.23537 -12.20013 -12.02059 -11.81237 -11.73981 -11.40098 -10.79944 -10.61934 -10.57743 -10.14186 -9.55113 -8.21865 -6.35527 -1.02076 -0.37296 0.60860 0.80858 1.39697 1.41943 1.47568 1.53276 1.97735 2.28245 2.38474 2.45402 2.81057 3.07705 3.11084 3.18134 3.36099 3.67660 3.89475 4.00079 4.16834 4.23233 4.28973 4.34412 4.43588 4.44459 4.47123 4.57938 4.63556 4.88448 4.89436 4.94098 4.99076 5.02053 5.05410 5.11503 5.23809 5.24867 5.44416 5.45607 5.49966 5.75526 5.77023 6.04275 6.37122 6.49953 6.71665 7.08452 7.35836 8.85068 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004612 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.000819 B = 6070.148806 C = 7425.954241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.159 3.841 3 N -0.293 5.293 4 O -0.098 6.098 5 C 0.283 3.717 6 N -0.482 5.482 7 C 0.217 3.783 8 C -0.043 4.043 9 C -0.142 4.142 10 C -0.151 4.151 11 C -0.160 4.160 12 C 0.009 3.991 13 C 0.543 3.457 14 O -0.558 6.558 15 N -0.588 5.588 16 C 0.069 3.931 17 C 0.259 3.741 18 C -0.543 4.543 19 H 0.054 0.946 20 C 0.018 3.982 21 N -0.923 5.923 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.274 1.274 26 C -0.237 4.237 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.187 0.813 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.010 0.990 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.821 -1.928 0.353 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.021 4.021 3 N -0.043 5.043 4 O -0.101 6.101 5 C 0.101 3.899 6 N -0.203 5.203 7 C 0.074 3.926 8 C -0.063 4.063 9 C -0.200 4.200 10 C -0.209 4.209 11 C -0.180 4.180 12 C -0.004 4.004 13 C 0.329 3.671 14 O -0.437 6.437 15 N -0.318 5.318 16 C -0.073 4.073 17 C 0.139 3.861 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.182 4.182 21 N -0.563 5.563 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.200 1.200 26 C -0.244 4.244 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.204 0.796 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.029 0.971 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.178 -0.064 0.761 19.193 hybrid contribution -1.934 -0.183 -0.412 1.985 sum 17.244 -0.247 0.349 17.250 Atomic orbital electron populations 1.20565 0.82787 1.04971 1.05449 1.24789 0.99042 0.89034 0.89239 1.80038 0.83900 1.17259 1.23063 1.89164 1.23812 1.15579 1.81537 1.20447 0.89437 0.86296 0.93712 1.66438 1.32356 1.03161 1.18325 1.22056 0.95801 0.87483 0.87279 1.20382 0.92494 0.93801 0.99589 1.21869 1.03575 1.01913 0.92658 1.22023 1.04004 0.95684 0.99139 1.22543 0.90271 1.02849 1.02360 1.20034 0.95019 0.91179 0.94158 1.18296 0.86491 0.80260 0.82064 1.90763 1.52588 1.60371 1.40023 1.48077 1.11751 1.38178 1.33843 1.22182 0.91330 0.99440 0.94308 1.18932 0.76223 0.94630 0.96321 1.21599 0.95475 1.16009 1.25059 0.92787 1.25691 0.98349 0.96436 0.97767 1.70020 1.11934 1.30992 1.43317 0.85625 0.77677 0.78987 0.79535 1.18965 1.20665 1.19983 1.21340 0.93534 0.94805 1.14699 0.87861 0.87665 0.90347 0.88048 0.91215 0.88946 0.93277 0.90925 0.88910 0.92712 0.79567 0.89147 0.90277 0.90944 0.94742 0.97147 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.66 8.90 71.24 0.63 -2.02 16 2 C 0.16 5.54 7.46 44.94 0.34 5.88 16 3 N -0.29 -10.31 12.81 -43.68 -0.56 -10.87 16 4 O -0.10 -3.49 12.06 29.81 0.36 -3.13 16 5 C 0.28 9.42 8.64 85.16 0.74 10.15 16 6 N -0.48 -13.69 10.25 -296.37 -3.04 -16.72 16 7 C 0.22 4.74 5.79 42.69 0.25 4.99 16 8 C -0.04 -0.58 3.21 -11.54 -0.04 -0.61 16 9 C -0.14 -1.48 9.17 71.98 0.66 -0.82 16 10 C -0.15 -1.43 8.62 71.98 0.62 -0.81 16 11 C -0.16 -3.69 6.99 22.64 0.16 -3.53 16 12 C 0.01 0.29 4.88 -19.76 -0.10 0.19 16 13 C 0.54 21.16 6.32 86.83 0.55 21.71 16 14 O -0.56 -26.02 14.43 -3.80 -0.05 -26.07 16 15 N -0.59 -22.45 2.86 -854.39 -2.44 -24.89 16 16 C 0.07 1.82 9.11 127.77 1.16 2.98 16 17 C 0.26 12.61 5.17 85.63 0.44 13.06 16 18 C -0.54 -28.68 9.39 25.60 0.24 -28.44 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 20 C 0.02 0.94 5.46 84.65 0.46 1.40 16 21 N -0.92 -52.40 13.29 21.45 0.28 -52.11 16 22 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 C -0.24 -8.16 6.17 -20.00 -0.12 -8.28 16 27 H 0.10 3.40 8.06 -2.38 -0.02 3.38 16 28 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.08 3.03 6.63 -2.39 -0.02 3.01 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.59 6.46 -2.39 -0.02 0.57 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.19 3.11 4.74 -2.91 -0.01 3.10 16 38 H 0.09 1.66 7.18 -2.38 -0.02 1.64 16 39 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 40 H 0.07 1.69 6.32 -2.39 -0.02 1.67 16 41 H 0.03 1.68 8.07 -2.38 -0.02 1.66 16 42 H 0.01 0.58 7.36 -2.39 -0.02 0.57 16 43 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -69.26 357.82 3.61 -65.65 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.04 Total: 8.00 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 5.99 Total: 15.84 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.75 Total: -104.60 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: 0.30 Total: -29.20 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.26 3.61 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078541335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.539 kcal (2) G-P(sol) polarization free energy of solvation -69.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds