Wall clock time and date at job start Tue Mar 31 2020 11:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99572 * 2 1 4 4 H 1.48499 * 109.47076 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47151 * 120.00030 * 3 2 1 6 6 H 1.48497 * 109.46793 * 239.99871 * 3 2 1 7 7 C 1.37874 * 120.00747 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00544 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99565 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47187 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47246 * 180.02562 * 11 10 9 13 13 O 1.42109 * 110.53818 * 291.62264 * 12 11 10 14 14 O 1.42099 * 110.54454 * 68.37265 * 12 11 10 15 15 N 1.65601 * 104.44921 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99603 * 269.99403 * 15 12 11 17 17 C 1.53003 * 109.47122 * 261.32023 * 16 15 12 18 18 H 1.08995 * 110.80468 * 309.21156 * 17 16 15 19 19 C 1.54813 * 110.90283 * 185.58071 * 17 16 15 20 20 C 1.54104 * 104.18630 * 220.92350 * 19 17 16 21 21 O 1.43742 * 107.29230 * 357.97138 * 20 19 17 22 22 C 1.44423 * 107.00478 * 26.48915 * 21 20 19 23 23 C 1.46498 * 119.99998 * 89.99690 * 15 12 11 24 24 C 1.53004 * 117.49549 * 182.12355 * 23 15 12 25 25 C 1.53004 * 60.00153 * 252.51205 * 24 23 15 26 26 H 0.97008 * 119.99351 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47439 * 299.99726 * 9 7 2 28 28 H 1.09005 * 109.47281 * 59.99634 * 9 7 2 29 29 H 1.08998 * 109.47586 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.46982 * 60.00657 * 10 9 7 31 31 H 1.09005 * 109.46653 * 300.00006 * 11 10 9 32 32 H 1.08994 * 109.47059 * 59.99705 * 11 10 9 33 33 H 1.08996 * 109.47269 * 21.32610 * 16 15 12 34 34 H 1.09008 * 109.46773 * 141.32426 * 16 15 12 35 35 H 1.08998 * 110.49396 * 339.59897 * 19 17 16 36 36 H 1.08998 * 110.48500 * 102.25191 * 19 17 16 37 37 H 1.09000 * 109.88097 * 117.39795 * 20 19 17 38 38 H 1.09000 * 109.87911 * 238.40404 * 20 19 17 39 39 H 1.08999 * 110.65638 * 201.47987 * 22 21 20 40 40 H 1.09007 * 110.60063 * 78.46468 * 22 21 20 41 41 H 1.08995 * 115.55262 * 327.83253 * 23 15 12 42 42 H 1.08997 * 117.50234 * 0.02562 * 24 23 15 43 43 H 1.08998 * 117.49509 * 145.02122 * 24 23 15 44 44 H 1.08999 * 117.49847 * 252.51213 * 25 24 23 45 45 H 1.08995 * 117.49835 * 107.48980 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 1.2125 6 1 3.1027 1.6965 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4806 -4.9871 -0.0001 12 16 2.6594 -6.3657 0.0007 13 8 3.3570 -6.4259 -1.2360 14 8 3.3553 -6.4261 1.2381 15 7 1.7091 -7.7220 -0.0008 16 6 1.2876 -8.3223 1.2673 17 6 2.2006 -9.5040 1.6005 18 1 2.2790 -10.1839 0.7522 19 6 1.7008 -10.2496 2.8619 20 6 2.9885 -10.5741 3.6438 21 8 4.0956 -10.0980 2.8603 22 6 3.6011 -9.0121 2.0466 23 6 1.2901 -8.3213 -1.2702 24 6 0.3721 -9.5437 -1.2052 25 6 1.8380 -9.7086 -1.6113 26 1 -0.4849 -0.8402 0.0004 27 1 0.6242 -2.5567 0.8903 28 1 0.6248 -2.5571 -0.8897 29 1 2.8722 -3.6042 -0.8894 30 1 2.8720 -3.6042 0.8906 31 1 0.8536 -5.0450 0.8897 32 1 0.8542 -5.0446 -0.8902 33 1 1.3522 -7.5780 2.0609 34 1 0.2587 -8.6716 1.1796 35 1 1.0481 -9.6062 3.4519 36 1 1.1827 -11.1669 2.5825 37 1 2.9732 -10.0685 4.6094 38 1 3.0715 -11.6509 3.7907 39 1 4.2461 -8.8549 1.1820 40 1 3.5176 -8.0987 2.6356 41 1 1.1409 -7.6227 -2.0935 42 1 0.0797 -9.9016 -0.2181 43 1 -0.3813 -9.6493 -1.9858 44 1 2.0490 -9.9227 -2.6591 45 1 2.5103 -10.1752 -0.8913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104112239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:03 Heat of formation + Delta-G solvation = -102.294741 kcal Electronic energy + Delta-G solvation = -25668.637352 eV Core-core repulsion = 22006.892656 eV Total energy + Delta-G solvation = -3661.744696 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.93251 -38.27597 -37.08207 -35.87143 -34.96954 -34.24010 -32.32673 -32.04972 -29.45940 -27.51034 -26.05271 -23.50365 -22.87027 -22.75662 -21.84067 -20.92545 -20.72077 -19.10654 -18.03833 -17.03139 -16.76968 -16.51368 -16.14152 -15.58215 -15.42634 -15.12834 -14.95752 -14.34287 -14.12423 -13.77022 -13.44360 -13.32571 -13.06367 -12.91954 -12.35576 -12.13201 -12.10122 -12.08186 -11.95698 -11.85452 -11.67774 -11.66177 -11.50546 -11.31852 -10.97340 -10.83501 -10.82758 -10.67790 -10.60586 -10.15618 -10.14058 -9.80836 -9.74654 -9.02950 -8.60436 -8.39743 -6.43587 -4.13631 0.26061 2.51771 3.42239 3.43844 3.47772 3.62476 3.73020 3.92366 4.11451 4.15925 4.41596 4.48040 4.50490 4.59276 4.61086 4.67148 4.78149 4.84351 4.98549 5.02307 5.08223 5.11311 5.28846 5.34441 5.36166 5.39276 5.47336 5.53575 5.63151 5.71246 5.71614 5.80160 5.86107 5.96193 6.07374 6.09326 6.26186 6.35514 6.66890 6.73343 7.22455 7.34449 8.10106 8.38372 8.80067 9.58739 10.97152 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.003132 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.426589 B = 8937.495681 C = 9536.663814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.608 4.608 8 H 0.052 0.948 9 C 0.018 3.982 10 C -0.098 4.098 11 C -0.612 4.612 12 S 2.596 3.404 13 O -0.952 6.952 14 O -0.952 6.952 15 N -0.976 5.976 16 C 0.129 3.871 17 C -0.149 4.149 18 H 0.095 0.905 19 C -0.149 4.149 20 C 0.047 3.953 21 O -0.383 6.383 22 C 0.050 3.950 23 C 0.087 3.913 24 C -0.181 4.181 25 C -0.193 4.193 26 H 0.268 0.732 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 -23.763 2.090 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.646 4.646 8 H 0.070 0.930 9 C -0.020 4.020 10 C -0.138 4.138 11 C -0.743 4.743 12 S 2.693 3.307 13 O -0.942 6.942 14 O -0.942 6.942 15 N -0.809 5.809 16 C 0.004 3.996 17 C -0.169 4.169 18 H 0.113 0.887 19 C -0.188 4.188 20 C -0.030 4.030 21 O -0.302 6.302 22 C -0.026 4.026 23 C -0.020 4.020 24 C -0.220 4.220 25 C -0.232 4.232 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.080 -22.191 2.109 22.291 hybrid contribution -0.827 -1.496 -0.026 1.709 sum -0.747 -23.687 2.083 23.790 Atomic orbital electron populations 1.70803 1.06898 1.30528 1.46515 1.25892 0.96519 1.02835 0.93534 0.83540 0.74918 0.75146 0.76700 1.20702 1.21289 1.21288 1.22068 0.94546 0.91870 1.56139 0.92974 1.19181 0.94167 0.92269 0.96424 1.21363 0.99095 0.91118 1.02195 1.30626 1.16547 1.16089 1.11087 1.05603 0.75792 0.74791 0.74476 1.93581 1.69921 1.85573 1.45108 1.93570 1.69912 1.85643 1.45104 1.57407 1.70145 1.43627 1.09762 1.21322 0.98389 0.95510 0.84411 1.23403 0.96785 0.97877 0.98821 0.88726 1.22944 0.98513 1.01032 0.96295 1.23104 0.85547 0.99728 0.94638 1.88867 1.32828 1.51066 1.57409 1.23893 0.93064 0.90529 0.95149 1.21365 1.03553 0.90247 0.86793 1.23291 0.93946 1.01161 1.03582 1.23521 0.96397 1.00415 1.02879 0.92176 0.97044 0.97058 0.91450 0.91368 0.85561 0.85540 0.89163 0.89666 0.90244 0.90395 0.92383 0.90168 0.89566 0.89300 0.84948 0.88084 0.87903 0.87992 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.69 13.65 55.43 0.76 -26.93 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 25.22 29.90 -169.99 -5.08 20.14 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -17.32 9.11 -34.44 -0.31 -17.64 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 10 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 11 C -0.61 -9.20 6.18 37.16 0.23 -8.97 16 12 S 2.60 36.96 5.37 -107.50 -0.58 36.39 16 13 O -0.95 -16.37 17.25 -57.54 -0.99 -17.36 16 14 O -0.95 -15.16 13.70 -57.54 -0.79 -15.94 16 15 N -0.98 -10.39 3.01 -107.30 -0.32 -10.72 16 16 C 0.13 1.14 4.18 -4.04 -0.02 1.12 16 17 C -0.15 -1.38 3.03 -88.61 -0.27 -1.64 16 18 H 0.09 0.85 4.95 -51.93 -0.26 0.59 16 19 C -0.15 -1.09 6.60 -25.20 -0.17 -1.26 16 20 C 0.05 0.42 7.70 37.73 0.29 0.71 16 21 O -0.38 -4.95 11.52 -35.23 -0.41 -5.36 16 22 C 0.05 0.63 5.68 38.21 0.22 0.84 16 23 C 0.09 0.83 5.92 -67.92 -0.40 0.42 16 24 C -0.18 -1.27 9.54 -26.73 -0.26 -1.52 16 25 C -0.19 -1.64 9.87 -26.73 -0.26 -1.90 16 26 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 27 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 28 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.13 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.09 0.79 7.30 -51.93 -0.38 0.41 16 34 H 0.09 0.56 6.55 -51.92 -0.34 0.22 16 35 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.17 8.04 -51.93 -0.42 0.76 16 40 H 0.09 1.21 6.39 -51.93 -0.33 0.88 16 41 H 0.13 1.20 8.12 -51.93 -0.42 0.78 16 42 H 0.10 0.63 6.20 -51.93 -0.32 0.31 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.10 0.90 5.75 -51.93 -0.30 0.60 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -34.98 363.87 -10.54 -45.53 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.31 Total: 0.05 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: -1.30 Total: -31.26 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.43 Total: -37.65 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -2.19 Total: -38.67 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.08 Total: 20.14 kcal Atomic # 16 Polarization: 36.96 SS G_CDS: -0.58 Total: 36.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.98 -10.54 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104112239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.767 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds