Wall clock time and date at job start Tue Mar 31 2020 11:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99572 * 2 1 4 4 H 1.48499 * 109.47076 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47151 * 120.00030 * 3 2 1 6 6 H 1.48497 * 109.46793 * 239.99871 * 3 2 1 7 7 C 1.37874 * 120.00747 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00544 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99565 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47187 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47246 * 180.02562 * 11 10 9 13 13 O 1.42109 * 110.53818 * 291.62264 * 12 11 10 14 14 O 1.42099 * 110.54454 * 68.37265 * 12 11 10 15 15 N 1.65601 * 104.44921 * 180.02562 * 12 11 10 16 16 C 1.46499 * 119.99603 * 269.99403 * 15 12 11 17 17 C 1.53003 * 109.47122 * 261.32023 * 16 15 12 18 18 H 1.08995 * 110.80468 * 309.21156 * 17 16 15 19 19 C 1.54813 * 110.90283 * 185.58071 * 17 16 15 20 20 C 1.54104 * 104.18630 * 220.92350 * 19 17 16 21 21 O 1.43742 * 107.29230 * 357.97138 * 20 19 17 22 22 C 1.44423 * 107.00478 * 26.48915 * 21 20 19 23 23 C 1.46498 * 119.99998 * 89.99690 * 15 12 11 24 24 C 1.53004 * 117.49549 * 182.12355 * 23 15 12 25 25 C 1.53004 * 60.00153 * 252.51205 * 24 23 15 26 26 H 0.97008 * 119.99351 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47439 * 299.99726 * 9 7 2 28 28 H 1.09005 * 109.47281 * 59.99634 * 9 7 2 29 29 H 1.08998 * 109.47586 * 299.99998 * 10 9 7 30 30 H 1.08998 * 109.46982 * 60.00657 * 10 9 7 31 31 H 1.09005 * 109.46653 * 300.00006 * 11 10 9 32 32 H 1.08994 * 109.47059 * 59.99705 * 11 10 9 33 33 H 1.08996 * 109.47269 * 21.32610 * 16 15 12 34 34 H 1.09008 * 109.46773 * 141.32426 * 16 15 12 35 35 H 1.08998 * 110.49396 * 339.59897 * 19 17 16 36 36 H 1.08998 * 110.48500 * 102.25191 * 19 17 16 37 37 H 1.09000 * 109.88097 * 117.39795 * 20 19 17 38 38 H 1.09000 * 109.87911 * 238.40404 * 20 19 17 39 39 H 1.08999 * 110.65638 * 201.47987 * 22 21 20 40 40 H 1.09007 * 110.60063 * 78.46468 * 22 21 20 41 41 H 1.08995 * 115.55262 * 327.83253 * 23 15 12 42 42 H 1.08997 * 117.50234 * 0.02562 * 24 23 15 43 43 H 1.08998 * 117.49509 * 145.02122 * 24 23 15 44 44 H 1.08999 * 117.49847 * 252.51213 * 25 24 23 45 45 H 1.08995 * 117.49835 * 107.48980 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 1.2125 6 1 3.1027 1.6965 -1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 6 1.4806 -4.9871 -0.0001 12 16 2.6594 -6.3657 0.0007 13 8 3.3570 -6.4259 -1.2360 14 8 3.3553 -6.4261 1.2381 15 7 1.7091 -7.7220 -0.0008 16 6 1.2876 -8.3223 1.2673 17 6 2.2006 -9.5040 1.6005 18 1 2.2790 -10.1839 0.7522 19 6 1.7008 -10.2496 2.8619 20 6 2.9885 -10.5741 3.6438 21 8 4.0956 -10.0980 2.8603 22 6 3.6011 -9.0121 2.0466 23 6 1.2901 -8.3213 -1.2702 24 6 0.3721 -9.5437 -1.2052 25 6 1.8380 -9.7086 -1.6113 26 1 -0.4849 -0.8402 0.0004 27 1 0.6242 -2.5567 0.8903 28 1 0.6248 -2.5571 -0.8897 29 1 2.8722 -3.6042 -0.8894 30 1 2.8720 -3.6042 0.8906 31 1 0.8536 -5.0450 0.8897 32 1 0.8542 -5.0446 -0.8902 33 1 1.3522 -7.5780 2.0609 34 1 0.2587 -8.6716 1.1796 35 1 1.0481 -9.6062 3.4519 36 1 1.1827 -11.1669 2.5825 37 1 2.9732 -10.0685 4.6094 38 1 3.0715 -11.6509 3.7907 39 1 4.2461 -8.8549 1.1820 40 1 3.5176 -8.0987 2.6356 41 1 1.1409 -7.6227 -2.0935 42 1 0.0797 -9.9016 -0.2181 43 1 -0.3813 -9.6493 -1.9858 44 1 2.0490 -9.9227 -2.6591 45 1 2.5103 -10.1752 -0.8913 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104112239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:02 Heat of formation + Delta-G solvation = -126.333849 kcal Electronic energy + Delta-G solvation = -25669.679766 eV Core-core repulsion = 22006.892656 eV Total energy + Delta-G solvation = -3662.787110 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71012 -39.02484 -38.30225 -37.12535 -36.80773 -34.98738 -34.26851 -32.83252 -30.21994 -29.32094 -26.85439 -25.48717 -23.61472 -23.37585 -22.96988 -22.29052 -21.46701 -20.05557 -19.26333 -18.85257 -17.71175 -17.49168 -17.20011 -16.69971 -16.37308 -16.00556 -15.82217 -15.67404 -15.59195 -15.32021 -14.88183 -14.14151 -13.96452 -13.79133 -13.74731 -13.68479 -13.28061 -13.23831 -13.17444 -13.09029 -12.78766 -12.62536 -12.55750 -12.36693 -12.28532 -12.00829 -11.94718 -11.91458 -11.73331 -11.52207 -11.33439 -11.24252 -10.71119 -10.62046 -10.58391 -9.79659 -8.73532 -6.44760 -0.89467 1.51485 1.52919 1.59387 1.79194 2.53411 2.65230 2.88602 2.95753 3.10870 3.11794 3.41182 3.60193 3.68691 3.75729 3.84749 3.92605 3.96862 4.04690 4.12004 4.20201 4.23477 4.32198 4.43166 4.46696 4.58403 4.67799 4.75821 4.80321 4.82993 4.83740 4.90448 4.96217 4.98993 5.11870 5.21239 5.24044 5.25767 5.33411 5.36227 5.58856 5.91917 5.92671 6.13331 6.52948 7.36300 8.68077 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019722 B = 0.003132 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.426589 B = 8937.495681 C = 9536.663814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.115 2.885 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.631 4.631 8 H 0.051 0.949 9 C 0.016 3.984 10 C -0.099 4.099 11 C -0.612 4.612 12 S 2.618 3.382 13 O -0.984 6.984 14 O -0.972 6.972 15 N -0.966 5.966 16 C 0.120 3.880 17 C -0.142 4.142 18 H 0.100 0.900 19 C -0.140 4.140 20 C 0.035 3.965 21 O -0.411 6.411 22 C 0.044 3.956 23 C 0.057 3.943 24 C -0.152 4.152 25 C -0.202 4.202 26 H 0.258 0.742 27 H 0.001 0.999 28 H -0.001 1.001 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -25.373 2.353 25.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.936 3.064 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.669 4.669 8 H 0.069 0.931 9 C -0.022 4.022 10 C -0.139 4.139 11 C -0.742 4.742 12 S 2.715 3.285 13 O -0.974 6.974 14 O -0.962 6.962 15 N -0.801 5.801 16 C -0.004 4.004 17 C -0.162 4.162 18 H 0.118 0.882 19 C -0.179 4.179 20 C -0.042 4.042 21 O -0.331 6.331 22 C -0.032 4.032 23 C -0.049 4.049 24 C -0.190 4.190 25 C -0.241 4.241 26 H 0.067 0.933 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.100 -23.812 2.375 23.956 hybrid contribution -0.451 -1.110 -0.086 1.201 sum -1.550 -24.922 2.289 25.075 Atomic orbital electron populations 1.70924 1.07816 1.30011 1.48432 1.27415 0.96651 1.06758 0.92516 0.82968 0.74225 0.71140 0.78104 1.20572 1.19400 1.19437 1.22565 0.94930 0.93668 1.55719 0.93103 1.19122 0.94690 0.93212 0.95214 1.21178 0.98427 0.92294 1.01959 1.30587 1.16869 1.13798 1.12967 1.04690 0.75512 0.75051 0.73244 1.93533 1.71128 1.86232 1.46540 1.93549 1.70751 1.86086 1.45791 1.57025 1.69802 1.42070 1.11227 1.21630 1.00012 0.95373 0.83395 1.23367 0.94727 0.98170 0.99975 0.88213 1.22954 0.97797 1.02147 0.94953 1.23389 0.85489 1.00698 0.94594 1.88831 1.35049 1.51094 1.58087 1.23823 0.94927 0.90238 0.94247 1.21637 1.06022 0.91018 0.86237 1.23413 0.93131 0.97672 1.04806 1.23574 0.97881 0.99506 1.03164 0.93277 0.98046 0.98221 0.91936 0.91554 0.83571 0.83952 0.89118 0.86146 0.88692 0.87912 0.92106 0.88533 0.91788 0.90976 0.85020 0.86611 0.86140 0.87511 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.65 21.44 0.29 -57.22 16 2 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 3 Si 1.11 50.39 29.90 68.60 2.05 52.44 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.63 -36.45 9.11 25.60 0.23 -36.22 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.02 0.81 4.28 29.85 0.13 0.94 16 10 C -0.10 -4.08 5.16 30.60 0.16 -3.92 16 11 C -0.61 -18.07 6.18 71.98 0.44 -17.62 16 12 S 2.62 74.10 5.37 -56.49 -0.30 73.80 16 13 O -0.98 -34.28 17.25 -127.65 -2.20 -36.48 16 14 O -0.97 -31.32 13.70 -127.65 -1.75 -33.07 16 15 N -0.97 -19.05 3.01 -493.37 -1.49 -20.53 16 16 C 0.12 1.82 4.18 86.38 0.36 2.18 16 17 C -0.14 -2.34 3.03 -9.49 -0.03 -2.37 16 18 H 0.10 1.56 4.95 -2.39 -0.01 1.54 16 19 C -0.14 -1.61 6.60 31.59 0.21 -1.40 16 20 C 0.03 0.57 7.70 72.36 0.56 1.12 16 21 O -0.41 -10.60 11.52 -148.98 -1.72 -12.32 16 22 C 0.04 1.12 5.68 72.67 0.41 1.53 16 23 C 0.06 0.97 5.92 45.00 0.27 1.23 16 24 C -0.15 -1.56 9.54 30.60 0.29 -1.27 16 25 C -0.20 -3.03 9.87 30.60 0.30 -2.73 16 26 H 0.26 15.83 7.22 -92.70 -0.67 15.16 16 27 H 0.00 0.07 8.01 -2.39 -0.02 0.05 16 28 H 0.00 -0.03 8.01 -2.38 -0.02 -0.05 16 29 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.09 1.40 7.30 -2.39 -0.02 1.38 16 34 H 0.12 1.02 6.55 -2.38 -0.02 1.01 16 35 H 0.09 0.82 7.86 -2.39 -0.02 0.80 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 40 H 0.07 2.02 6.39 -2.38 -0.02 2.01 16 41 H 0.13 2.22 8.12 -2.39 -0.02 2.20 16 42 H 0.12 0.87 6.20 -2.39 -0.01 0.86 16 43 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 1.54 5.75 -2.39 -0.01 1.53 16 Total: -1.00 -77.48 363.87 -0.25 -77.73 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.07 Total: 15.79 kcal Atomic # 6 Polarization: -63.93 SS G_CDS: 3.80 Total: -60.13 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -1.19 Total: -77.75 kcal Atomic # 8 Polarization: -76.20 SS G_CDS: -5.67 Total: -81.87 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Atomic # 16 Polarization: 74.10 SS G_CDS: -0.30 Total: 73.80 kcal Total: -77.48 -0.25 -77.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104112239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.604 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds