Wall clock time and date at job start Tue Mar 31 2020 11:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48500 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47274 * 299.99780 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99901 * 3 2 1 7 7 C 1.37883 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99599 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00061 * 0.27952 * 7 2 1 10 10 C 1.52997 * 109.47340 * 179.72283 * 9 7 2 11 11 C 1.52997 * 109.47382 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47177 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.54119 * 299.06110 * 12 11 10 14 14 O 1.42093 * 110.54484 * 75.81261 * 12 11 10 15 15 N 1.65603 * 104.44981 * 187.43943 * 12 11 10 16 16 C 1.46504 * 119.99336 * 262.46385 * 15 12 11 17 17 C 1.52996 * 109.47192 * 104.74989 * 16 15 12 18 18 H 1.08999 * 110.75139 * 56.86663 * 17 16 15 19 19 C 1.55307 * 110.84494 * 180.56565 * 17 16 15 20 20 C 1.54950 * 100.93837 * 152.31984 * 19 17 16 21 21 O 1.43638 * 105.14052 * 323.55440 * 20 19 17 22 22 C 1.43242 * 109.97087 * 24.42797 * 21 20 19 23 23 C 1.46488 * 120.00145 * 82.45901 * 15 12 11 24 24 C 1.53005 * 117.50032 * 188.62348 * 23 15 12 25 25 C 1.53005 * 60.00025 * 252.50915 * 24 23 15 26 26 H 0.96993 * 119.99966 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47135 * 299.72728 * 9 7 2 28 28 H 1.09002 * 109.46989 * 59.72127 * 9 7 2 29 29 H 1.09005 * 109.46925 * 299.99685 * 10 9 7 30 30 H 1.09003 * 109.46736 * 59.99744 * 10 9 7 31 31 H 1.08997 * 109.46922 * 300.00067 * 11 10 9 32 32 H 1.09002 * 109.46951 * 59.99841 * 11 10 9 33 33 H 1.09004 * 109.46198 * 224.74684 * 16 15 12 34 34 H 1.09000 * 109.47515 * 344.73914 * 16 15 12 35 35 H 1.08998 * 111.12318 * 270.23289 * 19 17 16 36 36 H 1.08997 * 111.12842 * 34.40437 * 19 17 16 37 37 H 1.09006 * 110.30533 * 204.63357 * 20 19 17 38 38 H 1.09001 * 110.31200 * 82.47397 * 20 19 17 39 39 H 1.08998 * 109.83141 * 238.77657 * 22 21 20 40 40 H 1.08999 * 109.90345 * 117.84737 * 22 21 20 41 41 H 1.09002 * 115.55823 * 334.32974 * 23 15 12 42 42 H 1.09001 * 117.49387 * 359.97438 * 24 23 15 43 43 H 1.08995 * 117.50174 * 145.01914 * 24 23 15 44 44 H 1.08997 * 117.49557 * 252.50601 * 25 24 23 45 45 H 1.09001 * 117.51254 * 107.47862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 -0.0052 10 6 2.2453 -3.6621 -0.0103 11 6 1.4803 -4.9871 -0.0156 12 16 2.6591 -6.3659 -0.0208 13 8 3.4745 -6.3203 -1.1837 14 8 3.2310 -6.5380 1.2685 15 7 1.7191 -7.7125 -0.2338 16 6 1.3154 -8.5144 0.9239 17 6 -0.1557 -8.2428 1.2445 18 1 -0.7845 -8.4514 0.3790 19 6 -0.6139 -9.0678 2.4780 20 6 -1.7446 -8.1648 3.0321 21 8 -1.2929 -6.8195 2.8106 22 6 -0.3531 -6.7906 1.7299 23 6 1.2910 -8.1016 -1.5796 24 6 0.2639 -9.2297 -1.6958 25 6 1.7218 -9.4792 -2.0873 26 1 -0.4850 0.8400 -0.0004 27 1 0.6244 -2.5608 0.8844 28 1 0.6245 -2.5529 -0.8955 29 1 2.8720 -3.6004 -0.9001 30 1 2.8720 -3.6082 0.8799 31 1 0.8540 -5.0485 0.8743 32 1 0.8534 -5.0411 -0.9056 33 1 1.4486 -9.5723 0.6971 34 1 1.9301 -8.2470 1.7834 35 1 -1.0005 -10.0416 2.1776 36 1 0.1941 -9.1741 3.2018 37 1 -1.8856 -8.3461 4.0977 38 1 -2.6732 -8.3461 2.4908 39 1 0.5969 -6.3843 2.0768 40 1 -0.7419 -6.1784 0.9163 41 1 1.2344 -7.2922 -2.3075 42 1 -0.0930 -9.6825 -0.7708 43 1 -0.4687 -9.1624 -2.5000 44 1 1.9482 -9.5761 -3.1491 45 1 2.3239 -10.0958 -1.4199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104112246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:05 Heat of formation + Delta-G solvation = -97.590580 kcal Electronic energy + Delta-G solvation = -25969.864025 eV Core-core repulsion = 22308.323316 eV Total energy + Delta-G solvation = -3661.540708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.95941 -38.26555 -37.04172 -35.81943 -34.70236 -34.29013 -32.20886 -31.99565 -29.52537 -27.90380 -26.08682 -23.70103 -22.86978 -22.67666 -21.87822 -20.75805 -20.50148 -18.96700 -17.98037 -16.85309 -16.59570 -16.47745 -16.23994 -15.83955 -15.34389 -14.90370 -14.84472 -14.47320 -14.21478 -13.94049 -13.47317 -13.23556 -12.88363 -12.56257 -12.28327 -12.21631 -12.02241 -11.98492 -11.92933 -11.83951 -11.69572 -11.62997 -11.29612 -11.25223 -11.06432 -10.94622 -10.90406 -10.79782 -10.57460 -10.36389 -9.94328 -9.65591 -9.45209 -9.17020 -8.85790 -8.39457 -6.04020 -4.07095 0.33445 2.55677 3.30641 3.38150 3.43004 3.52164 3.68000 3.95726 4.07214 4.16533 4.42049 4.43566 4.50273 4.57666 4.65936 4.72003 4.78896 4.94846 4.96287 5.02698 5.13719 5.20003 5.31964 5.32553 5.35206 5.44467 5.46290 5.53167 5.60437 5.62574 5.71590 5.84267 5.87831 5.90007 6.01368 6.23917 6.40325 6.44136 6.84582 6.87244 7.58781 7.68419 7.93964 8.34220 8.99304 9.57625 11.07192 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.003876 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.267595 B = 7222.512029 C = 8341.963650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.104 4.104 11 C -0.619 4.619 12 S 2.593 3.407 13 O -0.952 6.952 14 O -0.958 6.958 15 N -0.976 5.976 16 C 0.121 3.879 17 C -0.148 4.148 18 H 0.100 0.900 19 C -0.150 4.150 20 C 0.050 3.950 21 O -0.377 6.377 22 C 0.041 3.959 23 C 0.087 3.913 24 C -0.187 4.187 25 C -0.188 4.188 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.135 0.865 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -23.514 0.193 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.143 4.143 11 C -0.751 4.751 12 S 2.691 3.309 13 O -0.942 6.942 14 O -0.949 6.949 15 N -0.808 5.808 16 C -0.004 4.004 17 C -0.168 4.168 18 H 0.118 0.882 19 C -0.189 4.189 20 C -0.026 4.026 21 O -0.296 6.296 22 C -0.035 4.035 23 C -0.020 4.020 24 C -0.226 4.226 25 C -0.227 4.227 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.280 -23.243 0.416 23.358 hybrid contribution -0.335 0.924 -0.227 1.008 sum -2.615 -22.319 0.189 22.472 Atomic orbital electron populations 1.69970 1.06074 1.26654 1.50633 1.25017 0.94870 0.99340 0.95107 0.86512 0.80200 0.83572 0.77616 1.19603 1.20955 1.20932 1.21283 0.93269 0.90868 1.50982 0.92336 1.19065 0.93496 0.90377 0.97808 1.21498 0.99355 0.91545 1.01927 1.30864 1.16573 1.15941 1.11710 1.05653 0.75953 0.75030 0.74282 1.93576 1.64584 1.85935 1.50105 1.93556 1.75219 1.84846 1.41258 1.57367 1.69990 1.43035 1.10431 1.21374 0.93790 0.96766 0.88469 1.23403 0.98384 0.95623 0.99392 0.88203 1.23294 0.99269 0.99242 0.97070 1.23369 0.96395 0.81717 1.01166 1.88476 1.61201 1.27019 1.52888 1.23600 0.93519 0.96331 0.90049 1.21360 1.03022 0.93207 0.84387 1.23437 0.92979 1.02336 1.03836 1.23342 0.97138 0.99964 1.02292 0.92955 0.96013 0.96103 0.91404 0.91805 0.84848 0.85246 0.89965 0.87653 0.89689 0.89801 0.89664 0.92181 0.91123 0.90361 0.84779 0.87885 0.87932 0.87981 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 10 C -0.10 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.62 -9.74 5.50 37.16 0.20 -9.54 16 12 S 2.59 39.10 5.17 -107.50 -0.56 38.55 16 13 O -0.95 -16.96 17.42 -57.54 -1.00 -17.96 16 14 O -0.96 -16.56 16.32 -57.54 -0.94 -17.50 16 15 N -0.98 -10.87 2.90 -107.30 -0.31 -11.18 16 16 C 0.12 1.13 4.35 -4.04 -0.02 1.12 16 17 C -0.15 -1.28 2.71 -88.67 -0.24 -1.52 16 18 H 0.10 0.75 5.90 -51.93 -0.31 0.45 16 19 C -0.15 -1.08 6.62 -24.48 -0.16 -1.24 16 20 C 0.05 0.45 7.78 38.19 0.30 0.75 16 21 O -0.38 -5.05 11.36 -35.23 -0.40 -5.45 16 22 C 0.04 0.50 5.72 37.88 0.22 0.72 16 23 C 0.09 0.84 5.98 -67.93 -0.41 0.43 16 24 C -0.19 -1.31 8.89 -26.73 -0.24 -1.54 16 25 C -0.19 -1.53 10.13 -26.73 -0.27 -1.81 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.13 1.99 4.61 -51.93 -0.24 1.75 16 32 H 0.13 1.76 8.14 -51.92 -0.42 1.34 16 33 H 0.08 0.60 7.11 -51.93 -0.37 0.23 16 34 H 0.11 1.11 6.52 -51.93 -0.34 0.77 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.92 6.22 -51.93 -0.32 0.60 16 40 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 41 H 0.13 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.10 0.64 5.33 -51.93 -0.28 0.36 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.79 7.98 -51.93 -0.41 0.37 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -35.08 364.24 -10.56 -45.64 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.25 Total: -0.40 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -1.30 Total: -27.90 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.43 Total: -37.18 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.34 Total: -40.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 39.10 SS G_CDS: -0.56 Total: 38.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.08 -10.56 -45.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104112246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.947 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds