Wall clock time and date at job start Tue Mar 31 2020 11:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99920 * 2 1 4 4 H 1.48500 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47274 * 299.99780 * 3 2 1 6 6 H 1.48498 * 109.46946 * 59.99901 * 3 2 1 7 7 C 1.37883 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99599 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00061 * 0.27952 * 7 2 1 10 10 C 1.52997 * 109.47340 * 179.72283 * 9 7 2 11 11 C 1.52997 * 109.47382 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.47177 * 180.02562 * 11 10 9 13 13 O 1.42101 * 110.54119 * 299.06110 * 12 11 10 14 14 O 1.42093 * 110.54484 * 75.81261 * 12 11 10 15 15 N 1.65603 * 104.44981 * 187.43943 * 12 11 10 16 16 C 1.46504 * 119.99336 * 262.46385 * 15 12 11 17 17 C 1.52996 * 109.47192 * 104.74989 * 16 15 12 18 18 H 1.08999 * 110.75139 * 56.86663 * 17 16 15 19 19 C 1.55307 * 110.84494 * 180.56565 * 17 16 15 20 20 C 1.54950 * 100.93837 * 152.31984 * 19 17 16 21 21 O 1.43638 * 105.14052 * 323.55440 * 20 19 17 22 22 C 1.43242 * 109.97087 * 24.42797 * 21 20 19 23 23 C 1.46488 * 120.00145 * 82.45901 * 15 12 11 24 24 C 1.53005 * 117.50032 * 188.62348 * 23 15 12 25 25 C 1.53005 * 60.00025 * 252.50915 * 24 23 15 26 26 H 0.96993 * 119.99966 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47135 * 299.72728 * 9 7 2 28 28 H 1.09002 * 109.46989 * 59.72127 * 9 7 2 29 29 H 1.09005 * 109.46925 * 299.99685 * 10 9 7 30 30 H 1.09003 * 109.46736 * 59.99744 * 10 9 7 31 31 H 1.08997 * 109.46922 * 300.00067 * 11 10 9 32 32 H 1.09002 * 109.46951 * 59.99841 * 11 10 9 33 33 H 1.09004 * 109.46198 * 224.74684 * 16 15 12 34 34 H 1.09000 * 109.47515 * 344.73914 * 16 15 12 35 35 H 1.08998 * 111.12318 * 270.23289 * 19 17 16 36 36 H 1.08997 * 111.12842 * 34.40437 * 19 17 16 37 37 H 1.09006 * 110.30533 * 204.63357 * 20 19 17 38 38 H 1.09001 * 110.31200 * 82.47397 * 20 19 17 39 39 H 1.08998 * 109.83141 * 238.77657 * 22 21 20 40 40 H 1.08999 * 109.90345 * 117.84737 * 22 21 20 41 41 H 1.09002 * 115.55823 * 334.32974 * 23 15 12 42 42 H 1.09001 * 117.49387 * 359.97438 * 24 23 15 43 43 H 1.08995 * 117.50174 * 145.01914 * 24 23 15 44 44 H 1.08997 * 117.49557 * 252.50601 * 25 24 23 45 45 H 1.09001 * 117.51254 * 107.47862 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 -0.0052 10 6 2.2453 -3.6621 -0.0103 11 6 1.4803 -4.9871 -0.0156 12 16 2.6591 -6.3659 -0.0208 13 8 3.4745 -6.3203 -1.1837 14 8 3.2310 -6.5380 1.2685 15 7 1.7191 -7.7125 -0.2338 16 6 1.3154 -8.5144 0.9239 17 6 -0.1557 -8.2428 1.2445 18 1 -0.7845 -8.4514 0.3790 19 6 -0.6139 -9.0678 2.4780 20 6 -1.7446 -8.1648 3.0321 21 8 -1.2929 -6.8195 2.8106 22 6 -0.3531 -6.7906 1.7299 23 6 1.2910 -8.1016 -1.5796 24 6 0.2639 -9.2297 -1.6958 25 6 1.7218 -9.4792 -2.0873 26 1 -0.4850 0.8400 -0.0004 27 1 0.6244 -2.5608 0.8844 28 1 0.6245 -2.5529 -0.8955 29 1 2.8720 -3.6004 -0.9001 30 1 2.8720 -3.6082 0.8799 31 1 0.8540 -5.0485 0.8743 32 1 0.8534 -5.0411 -0.9056 33 1 1.4486 -9.5723 0.6971 34 1 1.9301 -8.2470 1.7834 35 1 -1.0005 -10.0416 2.1776 36 1 0.1941 -9.1741 3.2018 37 1 -1.8856 -8.3461 4.0977 38 1 -2.6732 -8.3461 2.4908 39 1 0.5969 -6.3843 2.0768 40 1 -0.7419 -6.1784 0.9163 41 1 1.2344 -7.2922 -2.3075 42 1 -0.0930 -9.6825 -0.7708 43 1 -0.4687 -9.1624 -2.5000 44 1 1.9482 -9.5761 -3.1491 45 1 2.3239 -10.0958 -1.4199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104112246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:05 Heat of formation + Delta-G solvation = -122.079540 kcal Electronic energy + Delta-G solvation = -25970.925946 eV Core-core repulsion = 22308.323316 eV Total energy + Delta-G solvation = -3662.602629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74131 -39.01696 -38.33831 -37.14602 -36.52822 -35.05606 -34.22048 -32.78276 -30.35222 -29.68213 -27.02660 -25.54512 -23.60265 -23.31878 -22.71020 -22.21197 -21.51457 -19.92345 -19.10427 -18.62779 -17.68935 -17.40824 -17.23070 -17.13892 -16.50213 -16.41485 -15.83071 -15.77318 -15.45378 -14.71251 -14.50649 -14.30152 -14.19432 -13.91182 -13.69703 -13.46797 -13.28860 -13.26833 -13.11917 -12.92635 -12.79141 -12.72705 -12.65184 -12.38322 -12.27980 -12.18956 -11.98647 -11.86390 -11.71210 -11.59429 -11.39772 -11.24883 -11.01014 -10.59758 -10.52924 -9.73705 -8.24006 -6.35519 -0.88508 1.38671 1.39150 1.51120 1.52824 2.38612 2.63911 2.86478 3.00257 3.06468 3.09511 3.35017 3.62643 3.68948 3.74158 3.85176 3.94529 3.96022 4.08956 4.17925 4.23228 4.31839 4.35849 4.37262 4.58098 4.62746 4.67254 4.72267 4.84571 4.87902 4.88937 4.96017 4.98216 5.01233 5.11063 5.23868 5.29057 5.34519 5.42606 5.58276 5.60729 5.77088 6.04868 6.17321 6.80015 7.34019 8.87813 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.003876 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.267595 B = 7222.512029 C = 8341.963650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.103 4.103 11 C -0.622 4.622 12 S 2.618 3.382 13 O -0.979 6.979 14 O -0.983 6.983 15 N -0.965 5.965 16 C 0.116 3.884 17 C -0.138 4.138 18 H 0.118 0.882 19 C -0.141 4.141 20 C 0.038 3.962 21 O -0.413 6.413 22 C 0.031 3.969 23 C 0.052 3.948 24 C -0.161 4.161 25 C -0.189 4.189 26 H 0.265 0.735 27 H -0.001 1.001 28 H 0.004 0.996 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 -25.651 -0.302 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.142 4.142 11 C -0.752 4.752 12 S 2.715 3.285 13 O -0.969 6.969 14 O -0.973 6.973 15 N -0.800 5.800 16 C -0.008 4.008 17 C -0.158 4.158 18 H 0.136 0.864 19 C -0.179 4.179 20 C -0.038 4.038 21 O -0.333 6.333 22 C -0.046 4.046 23 C -0.054 4.054 24 C -0.200 4.200 25 C -0.228 4.228 26 H 0.074 0.926 27 H 0.017 0.983 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.549 -25.373 -0.077 25.501 hybrid contribution -0.324 1.511 -0.059 1.547 sum -2.873 -23.862 -0.136 24.035 Atomic orbital electron populations 1.70086 1.07687 1.27863 1.51334 1.25948 0.95801 1.03273 0.94481 0.85412 0.79067 0.78727 0.77957 1.18728 1.20044 1.20248 1.21751 0.93721 0.92438 1.51123 0.92139 1.18939 0.93931 0.91860 0.95803 1.21290 0.98604 0.92337 1.01972 1.30848 1.16982 1.14367 1.13009 1.04623 0.75611 0.75214 0.73068 1.93535 1.65786 1.86579 1.51048 1.93518 1.76060 1.85299 1.42416 1.56975 1.69717 1.41337 1.11981 1.21597 0.93897 0.98007 0.87305 1.23377 0.98193 0.93493 1.00692 0.86364 1.23308 0.98526 0.99993 0.96024 1.23664 0.97572 0.80320 1.02231 1.88435 1.61561 1.29938 1.53357 1.23656 0.92506 0.98727 0.89685 1.21657 1.06108 0.94299 0.83383 1.23557 0.92489 0.99178 1.04780 1.23436 0.98297 0.98308 1.02772 0.92613 0.98297 0.97727 0.91206 0.91991 0.84370 0.83363 0.86718 0.89026 0.86306 0.89761 0.88797 0.90925 0.93016 0.91162 0.85025 0.86418 0.86392 0.87325 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.75 4.97 29.85 0.15 1.90 16 10 C -0.10 -4.37 5.16 30.59 0.16 -4.21 16 11 C -0.62 -20.16 5.50 71.98 0.40 -19.76 16 12 S 2.62 79.29 5.17 -56.49 -0.29 79.00 16 13 O -0.98 -34.98 17.42 -127.65 -2.22 -37.21 16 14 O -0.98 -34.40 16.32 -127.65 -2.08 -36.48 16 15 N -0.96 -20.19 2.90 -493.39 -1.43 -21.62 16 16 C 0.12 1.92 4.35 86.38 0.38 2.30 16 17 C -0.14 -2.07 2.71 -9.53 -0.03 -2.10 16 18 H 0.12 1.36 5.90 -2.39 -0.01 1.34 16 19 C -0.14 -1.59 6.62 32.05 0.21 -1.38 16 20 C 0.04 0.62 7.78 72.65 0.56 1.18 16 21 O -0.41 -11.12 11.36 -148.98 -1.69 -12.81 16 22 C 0.03 0.74 5.72 72.45 0.41 1.15 16 23 C 0.05 0.88 5.98 45.00 0.27 1.15 16 24 C -0.16 -1.64 8.89 30.60 0.27 -1.37 16 25 C -0.19 -2.53 10.13 30.60 0.31 -2.22 16 26 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.14 4.35 4.61 -2.39 -0.01 4.33 16 32 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 33 H 0.11 1.21 7.11 -2.38 -0.02 1.19 16 34 H 0.09 1.83 6.52 -2.39 -0.02 1.81 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.97 8.04 -2.39 -0.02 0.95 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.41 6.22 -2.39 -0.01 1.39 16 40 H 0.07 1.73 7.23 -2.39 -0.02 1.72 16 41 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.12 0.86 5.33 -2.39 -0.01 0.85 16 43 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 1.30 7.98 -2.39 -0.02 1.28 16 Total: -1.00 -77.67 364.24 -0.65 -78.32 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.97 Total: 14.93 kcal Atomic # 6 Polarization: -58.38 SS G_CDS: 3.79 Total: -54.59 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.15 Total: -78.09 kcal Atomic # 8 Polarization: -80.50 SS G_CDS: -6.00 Total: -86.50 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 79.29 SS G_CDS: -0.29 Total: 79.00 kcal Total: -77.67 -0.65 -78.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104112246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.758 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds