Wall clock time and date at job start Tue Mar 31 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34787 * 125.90284 * 2 1 4 4 C 1.41027 * 107.50036 * 180.28719 * 3 2 1 5 5 C 1.34772 * 107.51024 * 359.73476 * 4 3 2 6 6 C 1.50704 * 125.91083 * 180.02562 * 5 4 3 7 7 N 1.36738 * 125.91189 * 179.83471 * 2 1 3 8 8 C 1.38953 * 125.68745 * 359.97383 * 7 2 1 9 9 C 1.39100 * 126.41987 * 89.94227 * 8 7 2 10 10 C 1.46854 * 126.50126 * 0.02562 * 9 8 7 11 11 O 1.21578 * 119.99735 * 0.16057 * 10 9 8 12 12 O 1.34815 * 120.00043 * 180.16671 * 10 9 8 13 13 C 1.45194 * 116.99935 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47305 * 29.99426 * 13 12 10 15 15 C 1.53007 * 109.47164 * 269.99857 * 13 12 10 16 16 C 1.50700 * 109.47532 * 149.99686 * 13 12 10 17 17 H 1.08003 * 119.99877 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00244 * 180.02562 * 16 13 12 19 19 N 1.31507 * 120.00037 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99928 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47349 * 89.99257 * 20 18 16 22 22 H 1.48500 * 109.47363 * 209.99718 * 20 18 16 23 23 H 1.48509 * 109.47116 * 329.99524 * 20 18 16 24 24 C 1.41425 * 107.00112 * 180.12734 * 9 8 7 25 25 N 1.30336 * 108.15647 * 359.63189 * 24 9 8 26 26 N 1.34715 * 126.41210 * 269.66108 * 8 7 2 27 27 C 1.46497 * 125.74927 * 0.04191 * 26 8 7 28 28 H 1.08997 * 109.47140 * 270.15496 * 1 2 3 29 29 H 1.09001 * 109.47413 * 30.16208 * 1 2 3 30 30 H 1.09003 * 109.46791 * 150.16002 * 1 2 3 31 31 H 1.08001 * 126.24900 * 0.05806 * 3 2 1 32 32 H 1.08007 * 126.24276 * 179.75523 * 4 3 2 33 33 H 1.09004 * 109.46746 * 269.95694 * 6 5 4 34 34 H 1.08999 * 109.47008 * 29.95317 * 6 5 4 35 35 H 1.08997 * 109.47564 * 149.95759 * 6 5 4 36 36 H 1.09004 * 109.46658 * 299.99965 * 15 13 12 37 37 H 1.08995 * 109.46841 * 59.99484 * 15 13 12 38 38 H 1.08993 * 109.47020 * 180.02562 * 15 13 12 39 39 H 0.97008 * 119.99873 * 180.02562 * 19 18 16 40 40 H 1.08002 * 125.92628 * 179.90100 * 24 9 8 41 41 H 1.09001 * 109.47313 * 269.98210 * 27 26 8 42 42 H 1.09001 * 109.47446 * 29.98206 * 27 26 8 43 43 H 1.09005 * 109.47051 * 149.98426 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2974 1.0918 0.0000 4 6 3.6355 0.6466 -0.0067 5 6 3.6146 -0.7010 -0.0047 6 6 4.8213 -1.6038 -0.0095 7 7 2.3090 -1.1075 0.0032 8 6 1.8704 -2.4259 0.0075 9 6 1.6082 -3.2127 -1.1092 10 6 1.7430 -2.8076 -2.5143 11 8 2.1200 -1.6851 -2.7898 12 8 1.4486 -3.6805 -3.4987 13 6 1.6043 -3.2114 -4.8640 14 1 2.3971 -2.4643 -4.9033 15 6 0.2915 -2.5874 -5.3417 16 6 1.9629 -4.3718 -5.7561 17 1 2.0641 -5.3627 -5.3387 18 6 2.1629 -4.1683 -7.1050 19 7 2.0401 -2.9616 -7.6132 20 14 2.6067 -5.6068 -8.2109 21 1 1.3650 -6.2251 -8.7411 22 1 3.4406 -5.1238 -9.3407 23 1 3.3674 -6.6153 -7.4300 24 6 1.1850 -4.4760 -0.6349 25 7 1.2017 -4.4471 0.6680 26 7 1.6245 -3.1833 1.0941 27 6 1.7736 -2.7554 2.4872 28 1 -0.3633 0.0028 1.0276 29 1 -0.3634 0.8885 -0.5163 30 1 -0.3633 -0.8915 -0.5114 31 1 1.9664 2.1198 0.0009 32 1 4.5164 1.2716 -0.0122 33 1 5.1065 -1.8235 -1.0383 34 1 5.6482 -1.1077 0.4987 35 1 4.5820 -2.5330 0.5076 36 1 -0.5013 -3.3345 -5.3024 37 1 0.0322 -1.7482 -4.6965 38 1 0.4083 -2.2357 -6.3667 39 1 2.1804 -2.8185 -8.5624 40 1 0.9016 -5.3200 -1.2463 41 1 2.7858 -2.9734 2.8279 42 1 1.5887 -1.6837 2.5600 43 1 1.0573 -3.2909 3.1105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113690213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:14 Heat of formation + Delta-G solvation = 26.378952 kcal Electronic energy + Delta-G solvation = -27280.591099 eV Core-core repulsion = 23521.274912 eV Total energy + Delta-G solvation = -3759.316186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.36342 -41.75032 -40.84168 -37.47355 -35.35021 -34.86529 -33.85592 -33.66434 -31.76014 -30.21539 -30.12938 -28.33424 -27.44708 -25.22342 -25.01461 -23.15099 -22.95495 -21.57850 -21.52422 -20.00482 -18.90750 -18.51914 -17.91105 -17.27140 -17.10832 -16.66895 -16.38458 -16.35823 -15.58159 -15.25417 -14.87805 -14.77906 -14.58239 -14.27430 -14.20164 -14.02373 -13.89669 -13.78262 -13.66834 -13.44790 -13.19437 -13.14394 -12.98832 -12.91262 -12.78955 -12.55214 -12.41913 -12.35856 -12.15094 -11.57531 -11.39558 -10.98632 -10.84320 -10.59037 -10.12197 -9.88076 -8.86840 -8.27412 -6.44275 -0.20895 0.62901 0.79438 1.00214 1.42853 1.45322 1.56228 1.79917 1.98375 2.02967 2.08554 2.42903 3.03404 3.24607 3.58891 3.72347 3.89994 3.95972 4.15318 4.16440 4.24304 4.29517 4.37516 4.45893 4.48225 4.55650 4.58161 4.61523 4.77887 4.78872 4.84066 4.85494 4.93375 5.04027 5.17171 5.19914 5.28655 5.34674 5.48976 5.62329 5.90851 5.99171 6.06684 6.10659 6.11578 6.35791 6.61152 6.97970 7.27543 8.80600 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.003946 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.763748 B = 7094.817094 C = 7631.505015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.015 3.985 3 C -0.189 4.189 4 C -0.189 4.189 5 C 0.015 3.985 6 C -0.080 4.080 7 N -0.396 5.396 8 C 0.356 3.644 9 C -0.278 4.278 10 C 0.523 3.477 11 O -0.543 6.543 12 O -0.354 6.354 13 C 0.223 3.777 14 H 0.004 0.996 15 C -0.139 4.139 16 C -0.546 4.546 17 H 0.070 0.930 18 C 0.017 3.983 19 N -0.918 5.918 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C 0.115 3.885 25 N -0.273 5.273 26 N -0.341 5.341 27 C 0.083 3.917 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.038 0.962 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.053 0.947 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.018 0.982 38 H 0.081 0.919 39 H 0.271 0.729 40 H 0.224 0.776 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 2.970 21.830 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.213 4.213 4 C -0.213 4.213 5 C -0.092 4.092 6 C -0.138 4.138 7 N -0.077 5.077 8 C 0.132 3.868 9 C -0.292 4.292 10 C 0.369 3.631 11 O -0.435 6.435 12 O -0.271 6.271 13 C 0.170 3.830 14 H 0.022 0.978 15 C -0.197 4.197 16 C -0.584 4.584 17 H 0.088 0.912 18 C -0.183 4.183 19 N -0.556 5.556 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.071 4.071 25 N -0.094 5.094 26 N -0.121 5.121 27 C -0.056 4.056 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.072 0.928 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.240 0.760 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.529 2.444 22.800 22.936 hybrid contribution 0.387 0.205 -1.902 1.952 sum -0.143 2.649 20.897 21.065 Atomic orbital electron populations 1.20369 0.87012 1.03042 1.03492 1.20862 0.94330 0.84590 1.09378 1.21005 0.92597 0.98102 1.09625 1.21006 0.98388 0.92379 1.09544 1.20832 0.83407 0.95500 1.09425 1.20346 0.93787 0.97430 1.02213 1.40468 1.06645 1.00171 1.60382 1.17580 0.97620 0.84063 0.87570 1.19344 1.22250 0.98057 0.89584 1.20274 0.73649 0.82862 0.86364 1.90815 1.45342 1.22225 1.85136 1.86512 1.78379 1.44000 1.18191 1.20317 0.94422 0.95175 0.73069 0.97835 1.21965 0.97375 0.97938 1.02446 1.21285 1.49609 0.94565 0.92903 0.91212 1.25831 0.94249 0.99377 0.98826 1.70029 1.48805 1.22597 1.14121 0.85175 0.78650 0.78067 0.77477 1.19087 1.20377 1.18884 1.24429 0.94472 0.96760 0.91446 1.77289 1.22048 0.97139 1.12915 1.49186 1.47529 1.08327 1.07084 1.22482 1.06103 1.02417 0.74551 0.88724 0.88691 0.94261 0.82067 0.82121 0.92798 0.86843 0.92513 0.93421 0.96263 0.90029 0.92020 0.75991 0.88024 0.88444 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.09 71.24 0.72 -1.23 16 2 C 0.01 0.43 6.86 41.00 0.28 0.71 16 3 C -0.19 -5.03 10.76 22.16 0.24 -4.80 16 4 C -0.19 -5.08 10.76 22.16 0.24 -4.84 16 5 C 0.01 0.44 6.86 41.00 0.28 0.72 16 6 C -0.08 -2.01 10.09 71.24 0.72 -1.29 16 7 N -0.40 -12.14 2.03 -324.29 -0.66 -12.80 16 8 C 0.36 11.02 5.73 132.37 0.76 11.78 16 9 C -0.28 -10.14 6.15 -20.03 -0.12 -10.27 16 10 C 0.52 24.43 7.92 70.08 0.55 24.98 16 11 O -0.54 -28.46 15.55 19.58 0.30 -28.16 16 12 O -0.35 -17.92 9.71 -57.28 -0.56 -18.47 16 13 C 0.22 12.69 2.56 29.85 0.08 12.77 16 14 H 0.00 0.25 7.16 -2.38 -0.02 0.23 16 15 C -0.14 -7.44 9.33 71.98 0.67 -6.77 16 16 C -0.55 -31.46 8.90 25.60 0.23 -31.23 16 17 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 18 C 0.02 0.93 5.30 84.66 0.45 1.38 16 19 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 20 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 24 C 0.11 3.42 11.86 85.70 1.02 4.43 16 25 N -0.27 -7.23 12.48 -56.24 -0.70 -7.93 16 26 N -0.34 -8.28 3.99 -364.76 -1.46 -9.74 16 27 C 0.08 1.15 11.37 127.77 1.45 2.60 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.11 7.83 -2.39 -0.02 1.10 16 31 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.35 7.83 -2.39 -0.02 1.33 16 36 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 4.64 6.07 -2.39 -0.01 4.62 16 39 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 40 H 0.22 5.64 8.06 -2.91 -0.02 5.62 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.25 8.07 -2.39 -0.02 1.23 16 43 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -74.65 372.86 7.78 -66.88 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.01 Total: 19.30 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 7.56 Total: -1.06 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.57 Total: -83.72 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.25 Total: -46.63 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.65 7.78 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113690213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.256 kcal (2) G-P(sol) polarization free energy of solvation -74.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds