Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99560 * 2 1 4 4 C 1.53006 * 109.46777 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47012 * 180.02562 * 4 3 2 6 6 C 1.36535 * 124.77065 * 90.02381 * 5 4 3 7 7 C 1.50696 * 125.38485 * 359.97438 * 6 5 4 8 8 C 1.34330 * 109.23418 * 179.97438 * 6 5 4 9 9 C 1.46965 * 106.38778 * 0.02562 * 8 6 5 10 10 C 1.41824 * 127.08331 * 179.73815 * 9 8 6 11 11 C 1.38176 * 119.99943 * 43.92136 * 10 9 8 12 12 C 1.43199 * 119.99951 * 189.61217 * 11 10 9 13 13 N 9.08653 * 154.61686 * 139.22564 * 3 1 2 14 14 C 1.46823 * 120.00009 * 9.61592 * 11 10 9 15 15 O 1.21718 * 120.00057 * 6.15849 * 14 11 10 16 16 N 1.34780 * 120.00161 * 186.15465 * 14 11 10 17 17 C 1.36871 * 120.00143 * 179.97438 * 16 14 11 18 18 H 1.08008 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.39012 * 120.00230 * 180.02562 * 17 16 14 20 20 N 1.31386 * 119.99739 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00117 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47271 * 59.99636 * 21 19 17 23 23 H 1.48497 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47060 * 299.99487 * 21 19 17 25 25 C 1.34592 * 124.77510 * 270.00332 * 5 4 3 26 26 C 1.50707 * 125.95281 * 0.03858 * 25 5 4 27 27 H 1.08998 * 109.47153 * 299.99584 * 1 2 3 28 28 H 1.09003 * 109.47190 * 60.00356 * 1 2 3 29 29 H 1.08999 * 109.46609 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46821 * 60.00662 * 3 2 1 31 31 H 1.09001 * 109.47485 * 300.00078 * 3 2 1 32 32 H 1.08992 * 109.47119 * 60.00395 * 4 3 2 33 33 H 1.09001 * 109.47230 * 300.00299 * 4 3 2 34 34 H 1.08999 * 109.47504 * 269.97357 * 7 6 5 35 35 H 1.09002 * 109.46966 * 29.97616 * 7 6 5 36 36 H 1.09002 * 109.46779 * 149.97332 * 7 6 5 37 37 H 1.07998 * 126.80592 * 180.02562 * 8 6 5 38 38 H 1.08001 * 119.99924 * 223.92304 * 10 9 8 39 39 H 0.96993 * 119.99751 * 359.97438 * 16 14 11 40 40 H 0.97001 * 120.00255 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46982 * 269.99942 * 26 25 5 42 42 H 1.09001 * 109.47076 * 30.00667 * 26 25 5 43 43 H 1.09000 * 109.46545 * 150.00202 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.4479 3.2340 1.1231 7 6 4.2393 2.7662 2.5404 8 6 4.9748 4.4162 0.7639 9 6 4.9836 4.4369 -0.7056 10 6 5.4445 5.4843 -1.5434 11 6 6.6341 6.1260 -1.2562 12 6 6.9994 7.3111 -1.9722 13 7 7.2884 8.2506 -2.5438 14 6 7.5236 5.5926 -0.2170 15 8 7.2699 4.5266 0.3130 16 7 8.6212 6.2833 0.1502 17 6 9.4502 5.7863 1.1193 18 1 9.2249 4.8404 1.5896 19 6 10.5820 6.4989 1.4984 20 7 10.8562 7.6493 0.9259 21 14 11.7137 5.8203 2.8205 22 1 12.2470 4.5037 2.3877 23 1 12.8404 6.7626 3.0391 24 1 10.9536 5.6549 4.0855 25 6 4.4439 3.2247 -1.1039 26 6 4.2415 2.7710 -2.5268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8575 0.6437 -0.8891 33 1 3.8568 0.6439 0.8908 34 1 3.2505 3.0721 2.8822 35 1 4.3172 1.6797 2.5796 36 1 4.9993 3.2085 3.1845 37 1 5.3230 5.1968 1.4240 38 1 4.8658 5.7804 -2.4058 39 1 8.8237 7.1325 -0.2724 40 1 11.6461 8.1465 1.1901 41 1 5.1312 2.2432 -2.8699 42 1 3.3811 2.1036 -2.5763 43 1 4.0655 3.6384 -3.1630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126786252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = 14.034927 kcal Electronic energy + Delta-G solvation = -26059.765743 eV Core-core repulsion = 22299.914279 eV Total energy + Delta-G solvation = -3759.851463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.02941 -38.44681 -38.12148 -35.95077 -34.58086 -33.51833 -32.76289 -31.61837 -31.19320 -29.04913 -28.54783 -26.55541 -25.61133 -24.42216 -23.35738 -22.13734 -20.44834 -19.58329 -18.29382 -17.73502 -17.29617 -16.72028 -16.37520 -15.93416 -15.56395 -14.78773 -14.53449 -14.31933 -14.07678 -13.84565 -13.80116 -13.35803 -13.16317 -13.02716 -12.91849 -12.69223 -12.56948 -12.49040 -12.25260 -12.05148 -11.90925 -11.76200 -11.72412 -11.56160 -11.50529 -11.29113 -11.15806 -11.06717 -10.46920 -10.25574 -10.09559 -9.55673 -9.26581 -8.41098 -8.02711 -7.39947 -7.08406 -6.48706 -3.80115 1.12283 2.58583 2.79714 3.18899 3.22704 3.24185 3.27872 3.43670 3.74526 3.75711 4.13290 4.48150 4.51627 4.62381 4.66398 4.92532 4.94254 4.98435 4.99311 5.00746 5.16248 5.26969 5.27320 5.32591 5.36500 5.42007 5.52064 5.59957 5.74311 5.78204 5.89158 6.01724 6.15564 6.25814 6.50928 6.51491 6.68037 6.82305 6.91015 7.44637 7.47996 7.61895 7.71889 8.02242 8.06226 8.58223 9.13070 9.50491 10.07677 10.67738 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003365 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604872 B = 8320.182329 C = 9670.717516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.107 3.893 5 N -0.436 5.436 6 C -0.020 4.020 7 C -0.076 4.076 8 C -0.073 4.073 9 C -0.149 4.149 10 C 0.051 3.949 11 C -0.113 4.113 12 C 0.258 3.742 13 N -0.440 5.440 14 C 0.478 3.522 15 O -0.565 6.565 16 N -0.547 5.547 17 C -0.288 4.288 18 H 0.109 0.891 19 C 0.021 3.979 20 N -0.888 5.888 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.053 3.947 26 C -0.085 4.085 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.391 0.609 40 H 0.276 0.724 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.231 -12.382 -1.938 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.030 4.030 4 C -0.016 4.016 5 N -0.116 5.116 6 C -0.125 4.125 7 C -0.134 4.134 8 C -0.097 4.097 9 C -0.156 4.156 10 C 0.024 3.976 11 C -0.121 4.121 12 C -0.055 4.055 13 N -0.117 5.117 14 C 0.265 3.735 15 O -0.450 6.450 16 N -0.180 5.180 17 C -0.418 4.418 18 H 0.127 0.873 19 C -0.183 4.183 20 N -0.527 5.527 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.061 4.061 26 C -0.143 4.143 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.225 0.775 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.732 -11.978 -2.337 22.357 hybrid contribution 0.649 0.202 0.548 0.873 sum -18.083 -11.776 -1.790 21.653 Atomic orbital electron populations 1.22762 0.80404 1.02910 1.00230 1.87808 1.20192 1.27344 1.95542 1.22872 0.93715 0.84996 1.01412 1.21410 0.91473 0.83386 1.05343 1.42955 1.49546 1.13698 1.05404 1.19886 1.10692 0.94114 0.87786 1.20218 1.01901 1.00520 0.90746 1.21572 0.98630 0.96613 0.92851 1.18092 1.09119 0.94966 0.93446 1.20777 0.90783 0.91436 0.94586 1.18709 0.98032 0.93321 1.02028 1.26044 0.93306 0.93125 0.93027 1.81204 1.08441 1.11740 1.10338 1.17114 0.83372 0.87062 0.85960 1.90729 1.73925 1.22591 1.57749 1.42010 1.21031 1.20756 1.34233 1.19764 1.02506 1.06156 1.13396 0.87296 1.25408 0.98212 0.95644 0.99017 1.69626 1.27756 1.13390 1.41949 0.85861 0.79054 0.78549 0.80475 1.19725 1.20914 1.19664 1.20528 1.04272 0.93022 0.88295 1.20351 1.01867 1.01929 0.90129 0.93876 0.93913 0.89381 0.92462 0.92602 0.88824 0.88634 0.92239 0.92545 0.90226 0.84494 0.86006 0.77534 0.91446 0.90764 0.92141 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.59 10.70 -35.23 -0.38 -3.97 16 3 C 0.05 0.43 6.26 37.16 0.23 0.66 16 4 C 0.11 1.09 5.73 -4.04 -0.02 1.07 16 5 N -0.44 -5.84 2.68 -107.49 -0.29 -6.13 16 6 C -0.02 -0.30 6.84 -81.88 -0.56 -0.86 16 7 C -0.08 -0.92 10.04 36.00 0.36 -0.56 16 8 C -0.07 -1.29 7.78 -37.43 -0.29 -1.58 16 9 C -0.15 -2.47 4.71 -104.88 -0.49 -2.96 16 10 C 0.05 0.82 9.31 -38.23 -0.36 0.46 16 11 C -0.11 -2.20 5.87 -104.52 -0.61 -2.81 16 12 C 0.26 5.12 14.20 -22.44 -0.32 4.81 16 13 N -0.44 -9.21 18.54 41.88 0.78 -8.43 16 14 C 0.48 11.29 7.28 -12.79 -0.09 11.20 16 15 O -0.56 -14.12 11.66 5.17 0.06 -14.06 16 16 N -0.55 -14.24 5.23 -12.13 -0.06 -14.30 16 17 C -0.29 -7.92 9.68 -15.02 -0.15 -8.06 16 18 H 0.11 3.04 7.15 -52.48 -0.38 2.67 16 19 C 0.02 0.55 5.50 -17.46 -0.10 0.46 16 20 N -0.89 -24.65 13.05 55.50 0.72 -23.92 16 21 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 C 0.05 0.74 6.95 -81.27 -0.56 0.17 16 26 C -0.09 -0.87 9.63 36.01 0.35 -0.52 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.88 7.49 -51.93 -0.39 0.49 16 33 H 0.10 0.94 6.87 -51.93 -0.36 0.59 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.14 2.62 7.70 -52.49 -0.40 2.22 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.39 10.34 6.78 -40.82 -0.28 10.06 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.50 7.59 -51.93 -0.39 0.10 16 43 H 0.08 0.71 7.95 -51.93 -0.41 0.29 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -32.09 373.50 -5.97 -38.06 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.91 Total: 8.58 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.50 Total: 2.78 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 1.15 Total: -52.78 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.32 Total: -18.02 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.09 -5.97 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126786252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.096 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds