Wall clock time and date at job start Tue Mar 31 2020 11:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99560 * 2 1 4 4 C 1.53006 * 109.46777 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47012 * 180.02562 * 4 3 2 6 6 C 1.36535 * 124.77065 * 90.02381 * 5 4 3 7 7 C 1.50696 * 125.38485 * 359.97438 * 6 5 4 8 8 C 1.34330 * 109.23418 * 179.97438 * 6 5 4 9 9 C 1.46965 * 106.38778 * 0.02562 * 8 6 5 10 10 C 1.41824 * 127.08331 * 179.73815 * 9 8 6 11 11 C 1.38176 * 119.99943 * 43.92136 * 10 9 8 12 12 C 1.43199 * 119.99951 * 189.61217 * 11 10 9 13 13 N 9.08653 * 154.61686 * 139.22564 * 3 1 2 14 14 C 1.46823 * 120.00009 * 9.61592 * 11 10 9 15 15 O 1.21718 * 120.00057 * 6.15849 * 14 11 10 16 16 N 1.34780 * 120.00161 * 186.15465 * 14 11 10 17 17 C 1.36871 * 120.00143 * 179.97438 * 16 14 11 18 18 H 1.08008 * 119.99859 * 0.02562 * 17 16 14 19 19 C 1.39012 * 120.00230 * 180.02562 * 17 16 14 20 20 N 1.31386 * 119.99739 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00117 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47271 * 59.99636 * 21 19 17 23 23 H 1.48497 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47060 * 299.99487 * 21 19 17 25 25 C 1.34592 * 124.77510 * 270.00332 * 5 4 3 26 26 C 1.50707 * 125.95281 * 0.03858 * 25 5 4 27 27 H 1.08998 * 109.47153 * 299.99584 * 1 2 3 28 28 H 1.09003 * 109.47190 * 60.00356 * 1 2 3 29 29 H 1.08999 * 109.46609 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46821 * 60.00662 * 3 2 1 31 31 H 1.09001 * 109.47485 * 300.00078 * 3 2 1 32 32 H 1.08992 * 109.47119 * 60.00395 * 4 3 2 33 33 H 1.09001 * 109.47230 * 300.00299 * 4 3 2 34 34 H 1.08999 * 109.47504 * 269.97357 * 7 6 5 35 35 H 1.09002 * 109.46966 * 29.97616 * 7 6 5 36 36 H 1.09002 * 109.46779 * 149.97332 * 7 6 5 37 37 H 1.07998 * 126.80592 * 180.02562 * 8 6 5 38 38 H 1.08001 * 119.99924 * 223.92304 * 10 9 8 39 39 H 0.96993 * 119.99751 * 359.97438 * 16 14 11 40 40 H 0.97001 * 120.00255 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.46982 * 269.99942 * 26 25 5 42 42 H 1.09001 * 109.47076 * 30.00667 * 26 25 5 43 43 H 1.09000 * 109.46545 * 150.00202 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 4.4479 3.2340 1.1231 7 6 4.2393 2.7662 2.5404 8 6 4.9748 4.4162 0.7639 9 6 4.9836 4.4369 -0.7056 10 6 5.4445 5.4843 -1.5434 11 6 6.6341 6.1260 -1.2562 12 6 6.9994 7.3111 -1.9722 13 7 7.2884 8.2506 -2.5438 14 6 7.5236 5.5926 -0.2170 15 8 7.2699 4.5266 0.3130 16 7 8.6212 6.2833 0.1502 17 6 9.4502 5.7863 1.1193 18 1 9.2249 4.8404 1.5896 19 6 10.5820 6.4989 1.4984 20 7 10.8562 7.6493 0.9259 21 14 11.7137 5.8203 2.8205 22 1 12.2470 4.5037 2.3877 23 1 12.8404 6.7626 3.0391 24 1 10.9536 5.6549 4.0855 25 6 4.4439 3.2247 -1.1039 26 6 4.2415 2.7710 -2.5268 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8575 0.6437 -0.8891 33 1 3.8568 0.6439 0.8908 34 1 3.2505 3.0721 2.8822 35 1 4.3172 1.6797 2.5796 36 1 4.9993 3.2085 3.1845 37 1 5.3230 5.1968 1.4240 38 1 4.8658 5.7804 -2.4058 39 1 8.8237 7.1325 -0.2724 40 1 11.6461 8.1465 1.1901 41 1 5.1312 2.2432 -2.8699 42 1 3.3811 2.1036 -2.5763 43 1 4.0655 3.6384 -3.1630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126786252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:03 Heat of formation + Delta-G solvation = -6.235968 kcal Electronic energy + Delta-G solvation = -26060.644754 eV Core-core repulsion = 22299.914279 eV Total energy + Delta-G solvation = -3760.730475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21291 -40.15903 -38.85279 -37.56265 -36.23976 -35.04432 -33.84527 -33.25710 -32.70477 -29.99435 -29.57035 -27.62582 -26.86075 -25.90519 -24.29798 -23.32941 -22.12415 -20.83890 -20.08089 -19.12002 -18.86377 -17.61980 -17.04576 -16.91404 -16.70758 -16.45158 -15.86482 -15.70162 -15.44840 -15.28873 -15.12906 -14.65568 -14.49773 -14.29230 -14.03401 -13.91793 -13.75712 -13.60792 -13.47587 -13.34248 -13.23011 -13.22553 -12.89562 -12.69851 -12.49186 -12.41973 -12.39578 -12.25722 -12.14894 -12.11066 -11.45506 -10.72685 -10.69703 -10.15148 -9.99006 -8.74230 -8.46488 -8.39273 -5.89516 -0.26158 1.39235 1.41128 1.46166 1.53622 1.67549 1.84455 1.91100 2.26326 2.30990 2.76364 2.99800 3.11230 3.35151 3.40276 3.73956 3.93486 3.99345 4.05415 4.25529 4.30532 4.39545 4.42138 4.51644 4.54375 4.57335 4.67925 4.69473 4.81366 4.85556 4.87919 4.90656 5.02136 5.13685 5.16278 5.20413 5.41641 5.51248 5.58941 6.03552 6.09593 6.15704 6.38710 6.52994 6.59175 6.61649 7.14281 7.57519 8.15109 8.72699 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.003365 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604872 B = 8320.182329 C = 9670.717516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.056 3.944 4 C 0.102 3.898 5 N -0.431 5.431 6 C -0.018 4.018 7 C -0.075 4.075 8 C -0.110 4.110 9 C -0.204 4.204 10 C 0.123 3.877 11 C -0.167 4.167 12 C 0.277 3.723 13 N -0.470 5.470 14 C 0.493 3.507 15 O -0.580 6.580 16 N -0.576 5.576 17 C -0.319 4.319 18 H 0.093 0.907 19 C -0.024 4.024 20 N -0.928 5.928 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.266 1.266 25 C 0.085 3.915 26 C -0.090 4.090 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.172 0.828 39 H 0.385 0.615 40 H 0.276 0.724 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 -15.131 -3.019 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.022 4.022 4 C -0.020 4.020 5 N -0.110 5.110 6 C -0.124 4.124 7 C -0.133 4.133 8 C -0.133 4.133 9 C -0.211 4.211 10 C 0.098 3.902 11 C -0.175 4.175 12 C -0.035 4.035 13 N -0.148 5.148 14 C 0.282 3.718 15 O -0.465 6.465 16 N -0.211 5.211 17 C -0.449 4.449 18 H 0.111 0.889 19 C -0.222 4.222 20 N -0.569 5.569 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.191 1.191 25 C -0.031 4.031 26 C -0.147 4.147 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.189 0.811 39 H 0.217 0.783 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.751 -14.765 -3.419 26.511 hybrid contribution 1.076 0.705 0.827 1.529 sum -20.675 -14.061 -2.592 25.137 Atomic orbital electron populations 1.22957 0.78866 1.04098 1.00984 1.87779 1.21844 1.27259 1.95670 1.22709 0.92452 0.85194 1.01797 1.21652 0.92543 0.81383 1.06388 1.43240 1.48399 1.14575 1.04746 1.20208 1.09333 0.93344 0.89514 1.20276 1.02726 1.01459 0.88793 1.21474 1.00865 0.97415 0.93592 1.18356 1.12381 0.97212 0.93191 1.21404 0.87863 0.87549 0.93372 1.18232 0.99690 0.95785 1.03823 1.25936 0.92623 0.92656 0.92308 1.81205 1.09124 1.12614 1.11876 1.17734 0.82578 0.86265 0.85259 1.90703 1.74276 1.23258 1.58264 1.42044 1.22356 1.21194 1.35479 1.19741 1.03964 1.06193 1.14955 0.88915 1.26226 0.99244 0.95807 1.00971 1.69727 1.28574 1.14741 1.43893 0.84897 0.77143 0.77933 0.77829 1.19326 1.20111 1.19077 1.21167 1.00083 0.91649 0.90240 1.20597 1.03325 1.03562 0.87208 0.93337 0.92938 0.88105 0.92616 0.91748 0.87308 0.88237 0.89961 0.90812 0.91643 0.87565 0.81135 0.78287 0.91461 0.90214 0.89335 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -6.00 10.70 -148.98 -1.59 -7.59 16 3 C 0.06 0.78 6.26 71.98 0.45 1.23 16 4 C 0.10 1.68 5.73 86.38 0.50 2.18 16 5 N -0.43 -10.22 2.68 -494.00 -1.33 -11.55 16 6 C -0.02 -0.53 6.84 40.93 0.28 -0.25 16 7 C -0.08 -1.71 10.04 71.23 0.72 -1.00 16 8 C -0.11 -3.91 7.78 23.66 0.18 -3.72 16 9 C -0.20 -6.39 4.71 -20.03 -0.09 -6.49 16 10 C 0.12 3.69 9.31 23.14 0.22 3.90 16 11 C -0.17 -6.53 5.87 -19.80 -0.12 -6.65 16 12 C 0.28 11.14 14.20 88.32 1.25 12.39 16 13 N -0.47 -20.02 18.54 19.02 0.35 -19.67 16 14 C 0.49 24.26 7.28 86.49 0.63 24.89 16 15 O -0.58 -29.97 11.66 -4.41 -0.05 -30.02 16 16 N -0.58 -31.76 5.23 -310.49 -1.62 -33.38 16 17 C -0.32 -18.53 9.68 84.09 0.81 -17.72 16 18 H 0.09 5.50 7.15 -2.91 -0.02 5.48 16 19 C -0.02 -1.32 5.50 84.95 0.47 -0.85 16 20 N -0.93 -54.05 13.05 21.67 0.28 -53.77 16 21 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.09 2.08 6.95 42.21 0.29 2.37 16 26 C -0.09 -1.35 9.63 71.24 0.69 -0.66 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.11 1.54 7.49 -2.39 -0.02 1.52 16 33 H 0.10 1.62 6.87 -2.39 -0.02 1.61 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.42 6.92 -2.39 -0.02 1.40 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 4.36 7.70 -2.91 -0.02 4.33 16 38 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.38 21.70 6.78 -92.71 -0.63 21.07 16 40 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 0.90 7.59 -2.39 -0.02 0.89 16 43 H 0.10 1.17 7.95 -2.39 -0.02 1.15 16 Total: -1.00 -74.77 373.50 6.00 -68.76 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.41 Total: 29.90 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 7.52 Total: 11.12 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -2.31 Total: -118.36 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.65 Total: -37.61 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.77 6.00 -68.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126786252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.529 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds