Wall clock time and date at job start Tue Mar 31 2020 12:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38534 * 120.82127 * 2 1 4 4 C 1.38244 * 119.24109 * 179.97438 * 3 2 1 5 5 N 1.31890 * 120.93382 * 359.97438 * 4 3 2 6 6 C 1.31785 * 121.80096 * 359.71231 * 5 4 3 7 7 C 1.38943 * 120.65258 * 0.57499 * 6 5 4 8 8 N 1.39749 * 120.49151 * 179.70606 * 7 6 5 9 9 C 1.34771 * 120.00053 * 337.04248 * 8 7 6 10 10 O 1.21368 * 120.00225 * 354.66892 * 9 8 7 11 11 C 1.49355 * 119.99993 * 174.66784 * 9 8 7 12 12 O 1.21361 * 120.00181 * 0.38873 * 11 9 8 13 13 N 1.34778 * 120.00038 * 180.38856 * 11 9 8 14 14 C 1.46501 * 120.00059 * 354.55015 * 13 11 9 15 15 C 1.50704 * 109.46648 * 83.79140 * 14 13 11 16 16 H 1.07997 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99654 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00336 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47094 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47317 * 119.99586 * 19 17 15 22 22 H 1.48503 * 109.47227 * 239.99812 * 19 17 15 23 23 C 1.46503 * 119.99693 * 174.55695 * 13 11 9 24 24 C 1.52998 * 109.47421 * 94.86022 * 23 13 11 25 25 C 1.52993 * 117.49730 * 243.61728 * 24 23 13 26 26 C 1.52992 * 60.00334 * 252.50831 * 25 24 23 27 27 H 1.08999 * 109.46993 * 270.02202 * 1 2 3 28 28 H 1.09003 * 109.46804 * 30.01798 * 1 2 3 29 29 H 1.09001 * 109.47214 * 150.01664 * 1 2 3 30 30 H 1.07998 * 120.38183 * 359.96080 * 3 2 1 31 31 H 1.08002 * 119.53138 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.66959 * 180.28346 * 6 5 4 33 33 H 0.97008 * 119.99725 * 156.76966 * 8 7 6 34 34 H 1.09003 * 109.47266 * 203.78896 * 14 13 11 35 35 H 1.08993 * 109.46971 * 323.79253 * 14 13 11 36 36 H 0.97005 * 120.00313 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46721 * 214.85744 * 23 13 11 38 38 H 1.08999 * 109.47696 * 334.85152 * 23 13 11 39 39 H 1.08998 * 115.54850 * 29.32347 * 24 23 13 40 40 H 1.09002 * 117.50129 * 359.97438 * 25 24 23 41 41 H 1.09000 * 117.50105 * 145.02017 * 25 24 23 42 42 H 1.09002 * 117.50263 * 252.50944 * 26 25 24 43 43 H 1.09001 * 117.50009 * 107.48944 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1516 0.0005 5 7 4.2452 0.0020 0.0016 6 6 3.6094 -1.1523 0.0077 7 6 2.2207 -1.1962 0.0014 8 7 1.5500 -2.4222 0.0018 9 6 2.1715 -3.5305 -0.4474 10 8 3.2770 -3.4483 -0.9415 11 6 1.4998 -4.8599 -0.3371 12 8 0.3915 -4.9413 0.1506 13 7 2.1246 -5.9693 -0.7792 14 6 3.4089 -5.8586 -1.4753 15 6 4.5231 -5.7777 -0.4637 16 1 4.2970 -5.8055 0.5920 17 6 5.8309 -5.6670 -0.8860 18 7 6.1061 -5.6327 -2.1716 19 14 7.2120 -5.5675 0.3678 20 1 6.6421 -5.6270 1.7378 21 1 8.1442 -6.7063 0.1690 22 1 7.9477 -4.2893 0.1934 23 6 1.5193 -7.2859 -0.5638 24 6 0.7130 -7.6853 -1.8012 25 6 -0.7980 -7.8579 -1.6344 26 6 0.0961 -9.0853 -1.8210 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6966 2.1361 -0.0006 31 1 4.1568 2.0762 0.0001 32 1 4.1735 -2.0733 0.0130 33 1 0.6384 -2.4762 0.3291 34 1 3.5558 -6.7337 -2.1083 35 1 3.4118 -4.9597 -2.0916 36 1 7.0263 -5.5552 -2.4687 37 1 2.3037 -8.0221 -0.3881 38 1 0.8590 -7.2450 0.3025 39 1 1.0722 -7.2801 -2.7472 40 1 -1.2176 -7.6874 -0.6429 41 1 -1.4333 -7.5662 -2.4707 42 1 0.0492 -9.6011 -2.7801 43 1 0.2648 -9.7219 -0.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132651380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:04 Heat of formation + Delta-G solvation = 11.756330 kcal Electronic energy + Delta-G solvation = -26869.126865 eV Core-core repulsion = 23109.176595 eV Total energy + Delta-G solvation = -3759.950271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93762 -39.68454 -38.13508 -36.96341 -35.62625 -34.51046 -33.13314 -32.40522 -30.03028 -28.11975 -27.76737 -26.77315 -24.45702 -23.09223 -22.53328 -22.15231 -21.63510 -20.43776 -19.39534 -17.67900 -17.04611 -16.57367 -16.37567 -16.05874 -15.99189 -15.17946 -14.93777 -14.60256 -14.35447 -14.12233 -14.04797 -13.81778 -13.36263 -13.07310 -12.97238 -12.79212 -12.68920 -12.34860 -12.06688 -11.89649 -11.49252 -11.41530 -11.33381 -10.94805 -10.81657 -10.73873 -10.51727 -10.29026 -10.01129 -9.74204 -9.63048 -9.36150 -9.26573 -8.75817 -8.33911 -8.05475 -7.87758 -6.03893 -4.06516 1.16474 1.33640 2.11073 2.73971 3.31916 3.41136 3.42598 3.71740 3.88226 4.04555 4.11034 4.45511 4.67431 4.73801 4.82060 4.87063 4.98030 5.07918 5.14343 5.23095 5.33498 5.35313 5.39914 5.43714 5.64754 5.77321 5.80028 5.83216 5.93885 6.04827 6.08450 6.11442 6.27564 6.30303 6.34700 6.43982 6.65638 7.00203 7.25612 7.34093 7.45242 7.83950 8.02303 8.14128 8.18750 8.29269 8.57896 8.93494 9.56794 11.04994 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.005538 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.068579 B = 5054.740163 C = 7622.207372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.156 4.156 4 C 0.069 3.931 5 N -0.465 5.465 6 C 0.093 3.907 7 C 0.110 3.890 8 N -0.653 5.653 9 C 0.487 3.513 10 O -0.424 6.424 11 C 0.510 3.490 12 O -0.557 6.557 13 N -0.554 5.554 14 C 0.228 3.772 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.071 3.929 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.146 3.854 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.178 4.178 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.186 0.814 33 H 0.416 0.584 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 6.200 2.659 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.095 4.095 3 C -0.176 4.176 4 C -0.089 4.089 5 N -0.173 5.173 6 C -0.066 4.066 7 C 0.011 3.989 8 N -0.301 5.301 9 C 0.268 3.732 10 O -0.291 6.291 11 C 0.292 3.708 12 O -0.438 6.438 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.131 4.131 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.207 1.207 23 C 0.023 3.977 24 C -0.181 4.181 25 C -0.212 4.212 26 C -0.215 4.215 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.203 0.797 33 H 0.254 0.746 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.343 6.087 2.379 13.091 hybrid contribution -0.423 0.114 0.693 0.820 sum -11.766 6.200 3.072 13.650 Atomic orbital electron populations 1.20739 0.90205 1.03459 1.02785 1.20025 0.96622 0.91651 1.01180 1.21789 0.95407 0.97654 1.02797 1.22713 0.91659 0.96522 0.97983 1.67817 1.40531 0.98077 1.10922 1.23617 0.90198 0.97641 0.95191 1.18794 0.93373 0.85192 1.01509 1.43226 1.18222 1.05370 1.63233 1.20536 0.86911 0.85518 0.80189 1.90951 1.17066 1.84715 1.36324 1.19622 0.85391 0.85453 0.80346 1.90654 1.19354 1.86758 1.47078 1.48228 1.23099 1.04087 1.52918 1.19980 0.76798 0.99453 0.92860 1.21202 0.90808 1.50966 0.92583 0.92724 1.24784 0.98441 0.94795 0.95121 1.69914 1.19538 1.49771 1.13443 0.86566 0.82257 0.77777 0.81568 1.19925 1.21068 1.20671 1.21048 0.96780 0.84258 0.95593 1.22735 0.95032 0.99569 1.00781 1.22976 0.93280 1.02105 1.02838 1.22912 1.04829 0.90872 1.02921 0.90575 0.90706 0.91196 0.84863 0.83056 0.79733 0.74588 0.94735 0.91767 0.92820 0.89370 0.90285 0.87560 0.88687 0.89399 0.89003 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.53 36.01 0.34 -0.72 16 2 C -0.08 -1.07 5.93 -104.12 -0.62 -1.69 16 3 C -0.16 -1.82 9.81 -39.47 -0.39 -2.20 16 4 C 0.07 0.93 11.18 -17.52 -0.20 0.73 16 5 N -0.46 -8.21 10.35 -13.07 -0.14 -8.35 16 6 C 0.09 1.75 9.92 -17.31 -0.17 1.57 16 7 C 0.11 1.76 6.46 -83.59 -0.54 1.22 16 8 N -0.65 -10.48 5.04 -10.20 -0.05 -10.53 16 9 C 0.49 9.57 7.55 -11.63 -0.09 9.49 16 10 O -0.42 -9.73 9.21 5.48 0.05 -9.68 16 11 C 0.51 10.18 7.67 -11.63 -0.09 10.09 16 12 O -0.56 -10.93 16.04 5.49 0.09 -10.85 16 13 N -0.55 -11.32 2.47 -175.60 -0.43 -11.76 16 14 C 0.23 5.48 4.78 -5.19 -0.02 5.46 16 15 C -0.52 -13.70 7.80 -34.44 -0.27 -13.97 16 16 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 18 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.15 2.52 5.68 -4.04 -0.02 2.50 16 24 C -0.16 -2.46 6.01 -90.62 -0.54 -3.00 16 25 C -0.17 -2.29 10.18 -26.74 -0.27 -2.57 16 26 C -0.18 -2.18 10.25 -26.74 -0.27 -2.45 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.07 0.66 7.07 -51.93 -0.37 0.29 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.19 4.00 5.66 -52.49 -0.30 3.70 16 33 H 0.42 5.70 6.93 -40.82 -0.28 5.42 16 34 H 0.03 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.06 1.69 5.83 -51.93 -0.30 1.39 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 38 H 0.08 1.33 7.09 -51.93 -0.37 0.96 16 39 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 40 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -30.91 363.28 -8.34 -39.25 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.80 Total: 8.29 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -3.25 Total: 6.33 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.12 Total: -55.38 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.14 Total: -20.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.91 -8.34 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132651380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.010 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds