Wall clock time and date at job start Tue Mar 31 2020 12:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38534 * 120.82127 * 2 1 4 4 C 1.38244 * 119.24109 * 179.97438 * 3 2 1 5 5 N 1.31890 * 120.93382 * 359.97438 * 4 3 2 6 6 C 1.31785 * 121.80096 * 359.71231 * 5 4 3 7 7 C 1.38943 * 120.65258 * 0.57499 * 6 5 4 8 8 N 1.39749 * 120.49151 * 179.70606 * 7 6 5 9 9 C 1.34771 * 120.00053 * 337.04248 * 8 7 6 10 10 O 1.21368 * 120.00225 * 354.66892 * 9 8 7 11 11 C 1.49355 * 119.99993 * 174.66784 * 9 8 7 12 12 O 1.21361 * 120.00181 * 0.38873 * 11 9 8 13 13 N 1.34778 * 120.00038 * 180.38856 * 11 9 8 14 14 C 1.46501 * 120.00059 * 354.55015 * 13 11 9 15 15 C 1.50704 * 109.46648 * 83.79140 * 14 13 11 16 16 H 1.07997 * 119.99880 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99654 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00336 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99903 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47094 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47317 * 119.99586 * 19 17 15 22 22 H 1.48503 * 109.47227 * 239.99812 * 19 17 15 23 23 C 1.46503 * 119.99693 * 174.55695 * 13 11 9 24 24 C 1.52998 * 109.47421 * 94.86022 * 23 13 11 25 25 C 1.52993 * 117.49730 * 243.61728 * 24 23 13 26 26 C 1.52992 * 60.00334 * 252.50831 * 25 24 23 27 27 H 1.08999 * 109.46993 * 270.02202 * 1 2 3 28 28 H 1.09003 * 109.46804 * 30.01798 * 1 2 3 29 29 H 1.09001 * 109.47214 * 150.01664 * 1 2 3 30 30 H 1.07998 * 120.38183 * 359.96080 * 3 2 1 31 31 H 1.08002 * 119.53138 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.66959 * 180.28346 * 6 5 4 33 33 H 0.97008 * 119.99725 * 156.76966 * 8 7 6 34 34 H 1.09003 * 109.47266 * 203.78896 * 14 13 11 35 35 H 1.08993 * 109.46971 * 323.79253 * 14 13 11 36 36 H 0.97005 * 120.00313 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.46721 * 214.85744 * 23 13 11 38 38 H 1.08999 * 109.47696 * 334.85152 * 23 13 11 39 39 H 1.08998 * 115.54850 * 29.32347 * 24 23 13 40 40 H 1.09002 * 117.50129 * 359.97438 * 25 24 23 41 41 H 1.09000 * 117.50105 * 145.02017 * 25 24 23 42 42 H 1.09002 * 117.50263 * 252.50944 * 26 25 24 43 43 H 1.09001 * 117.50009 * 107.48944 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1897 0.0000 4 6 3.5987 1.1516 0.0005 5 7 4.2452 0.0020 0.0016 6 6 3.6094 -1.1523 0.0077 7 6 2.2207 -1.1962 0.0014 8 7 1.5500 -2.4222 0.0018 9 6 2.1715 -3.5305 -0.4474 10 8 3.2770 -3.4483 -0.9415 11 6 1.4998 -4.8599 -0.3371 12 8 0.3915 -4.9413 0.1506 13 7 2.1246 -5.9693 -0.7792 14 6 3.4089 -5.8586 -1.4753 15 6 4.5231 -5.7777 -0.4637 16 1 4.2970 -5.8055 0.5920 17 6 5.8309 -5.6670 -0.8860 18 7 6.1061 -5.6327 -2.1716 19 14 7.2120 -5.5675 0.3678 20 1 6.6421 -5.6270 1.7378 21 1 8.1442 -6.7063 0.1690 22 1 7.9477 -4.2893 0.1934 23 6 1.5193 -7.2859 -0.5638 24 6 0.7130 -7.6853 -1.8012 25 6 -0.7980 -7.8579 -1.6344 26 6 0.0961 -9.0853 -1.8210 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8899 -0.5141 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6966 2.1361 -0.0006 31 1 4.1568 2.0762 0.0001 32 1 4.1735 -2.0733 0.0130 33 1 0.6384 -2.4762 0.3291 34 1 3.5558 -6.7337 -2.1083 35 1 3.4118 -4.9597 -2.0916 36 1 7.0263 -5.5552 -2.4687 37 1 2.3037 -8.0221 -0.3881 38 1 0.8590 -7.2450 0.3025 39 1 1.0722 -7.2801 -2.7472 40 1 -1.2176 -7.6874 -0.6429 41 1 -1.4333 -7.5662 -2.4707 42 1 0.0492 -9.6011 -2.7801 43 1 0.2648 -9.7219 -0.9525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132651380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:03 Heat of formation + Delta-G solvation = -7.549879 kcal Electronic energy + Delta-G solvation = -26869.964045 eV Core-core repulsion = 23109.176595 eV Total energy + Delta-G solvation = -3760.787451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33056 -41.06110 -39.56664 -38.28415 -37.06224 -36.00676 -34.45801 -34.23586 -31.24817 -29.77622 -28.88008 -28.34713 -25.92434 -24.90380 -23.82478 -23.17059 -22.81096 -21.72575 -20.83627 -19.15950 -18.55854 -18.51685 -17.72304 -17.43278 -17.17090 -16.85798 -16.41410 -16.06250 -15.92881 -15.45684 -15.18022 -15.09714 -14.74431 -14.45570 -14.29955 -14.02935 -13.75365 -13.67981 -13.62047 -13.36103 -13.01652 -12.81181 -12.59095 -12.55392 -12.38007 -12.31722 -12.10817 -11.90715 -11.73936 -11.31402 -10.85235 -10.66262 -10.49872 -10.32671 -10.16476 -9.66783 -9.26886 -8.15908 -6.23606 -0.09502 0.23071 0.63932 1.30316 1.35338 1.40195 1.47785 2.17681 2.36428 2.53268 2.84782 2.95361 3.19007 3.33931 3.67023 3.71481 3.79462 3.81751 4.01381 4.03170 4.12012 4.30511 4.35191 4.60200 4.61890 4.71584 4.75218 4.77876 4.81632 4.85267 4.92048 5.03488 5.12279 5.21035 5.21542 5.26593 5.29609 5.35849 5.51771 5.74114 5.80542 6.02490 6.10029 6.28157 6.70018 6.80330 6.99884 7.09412 7.42587 8.92628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.005538 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.068579 B = 5054.740163 C = 7622.207372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 C -0.140 4.140 4 C 0.066 3.934 5 N -0.503 5.503 6 C 0.061 3.939 7 C 0.088 3.912 8 N -0.633 5.633 9 C 0.484 3.516 10 O -0.465 6.465 11 C 0.509 3.491 12 O -0.551 6.551 13 N -0.559 5.559 14 C 0.250 3.750 15 C -0.514 4.514 16 H 0.045 0.955 17 C 0.024 3.976 18 N -0.920 5.920 19 Si 0.946 3.054 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.287 1.287 23 C 0.146 3.854 24 C -0.189 4.189 25 C -0.166 4.166 26 C -0.155 4.155 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.142 0.858 33 H 0.428 0.572 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 7.730 3.602 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.159 4.159 4 C -0.091 4.091 5 N -0.213 5.213 6 C -0.098 4.098 7 C -0.010 4.010 8 N -0.282 5.282 9 C 0.266 3.734 10 O -0.336 6.336 11 C 0.291 3.709 12 O -0.432 6.432 13 N -0.289 5.289 14 C 0.129 3.871 15 C -0.553 4.553 16 H 0.064 0.936 17 C -0.175 4.175 18 N -0.561 5.561 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.197 1.197 22 H -0.214 1.214 23 C 0.024 3.976 24 C -0.208 4.208 25 C -0.203 4.203 26 C -0.192 4.192 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.201 0.799 31 H 0.203 0.797 32 H 0.159 0.841 33 H 0.269 0.731 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.859 7.604 3.355 16.160 hybrid contribution 0.238 -0.185 0.431 0.526 sum -13.621 7.419 3.786 15.966 Atomic orbital electron populations 1.20883 0.87104 1.04683 1.04452 1.20529 0.98706 0.90426 0.98561 1.22315 0.94620 0.99143 0.99845 1.23395 0.93281 0.96153 0.96298 1.67710 1.42011 0.98959 1.12598 1.23036 0.91402 0.96930 0.98401 1.18853 0.92675 0.86128 1.03293 1.42985 1.18365 1.04761 1.62098 1.20591 0.86513 0.86272 0.79994 1.90960 1.18753 1.85284 1.38560 1.19720 0.85459 0.85566 0.80169 1.90635 1.18928 1.86800 1.46872 1.48151 1.22189 1.05639 1.52905 1.19430 0.77985 0.97522 0.92122 1.21364 0.91668 1.49827 0.92457 0.93633 1.25469 1.00627 0.94815 0.96601 1.70011 1.19889 1.51233 1.14920 0.85701 0.79836 0.77610 0.79669 1.19544 1.19736 1.21377 1.21192 0.96863 0.82569 0.97004 1.22563 0.96527 1.02812 0.98909 1.23034 0.91728 1.02202 1.03360 1.23035 1.02109 0.89741 1.04328 0.88489 0.87869 0.91637 0.79901 0.79740 0.84068 0.73140 0.96017 0.94185 0.92847 0.89787 0.89627 0.89325 0.88551 0.88313 0.87452 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.53 71.24 0.68 -0.96 16 2 C -0.07 -1.64 5.93 -19.54 -0.12 -1.75 16 3 C -0.14 -2.70 9.81 22.34 0.22 -2.48 16 4 C 0.07 1.66 11.18 84.69 0.95 2.61 16 5 N -0.50 -18.19 10.35 -195.27 -2.02 -20.21 16 6 C 0.06 2.40 9.92 84.87 0.84 3.24 16 7 C 0.09 2.84 6.46 38.30 0.25 3.09 16 8 N -0.63 -20.68 5.04 -304.54 -1.54 -22.21 16 9 C 0.48 20.01 7.55 87.24 0.66 20.67 16 10 O -0.47 -23.03 9.21 -3.30 -0.03 -23.06 16 11 C 0.51 20.89 7.67 87.24 0.67 21.56 16 12 O -0.55 -21.49 16.04 -3.28 -0.05 -21.54 16 13 N -0.56 -23.77 2.47 -827.83 -2.05 -25.81 16 14 C 0.25 12.71 4.78 85.63 0.41 13.12 16 15 C -0.51 -28.52 7.80 25.60 0.20 -28.32 16 16 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 17 C 0.02 1.39 5.46 84.65 0.46 1.85 16 18 N -0.92 -55.02 13.29 21.45 0.28 -54.74 16 19 Si 0.95 45.80 29.54 68.60 2.03 47.82 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 23 C 0.15 5.09 5.68 86.38 0.49 5.58 16 24 C -0.19 -5.70 6.01 -10.80 -0.06 -5.77 16 25 C -0.17 -4.08 10.18 30.59 0.31 -3.77 16 26 C -0.15 -3.50 10.25 30.59 0.31 -3.18 16 27 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 0.96 8.10 -2.39 -0.02 0.94 16 29 H 0.06 1.03 7.07 -2.39 -0.02 1.02 16 30 H 0.18 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.19 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.14 6.78 5.66 -2.91 -0.02 6.77 16 33 H 0.43 11.44 6.93 -92.70 -0.64 10.79 16 34 H 0.02 1.15 8.03 -2.39 -0.02 1.13 16 35 H 0.04 2.27 5.83 -2.39 -0.01 2.25 16 36 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 37 H 0.08 2.94 8.11 -2.39 -0.02 2.92 16 38 H 0.09 2.85 7.09 -2.39 -0.02 2.83 16 39 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.10 2.35 8.03 -2.39 -0.02 2.33 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.87 363.28 3.29 -68.58 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.40 Total: 25.69 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 6.27 Total: 25.49 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -5.32 Total: -122.98 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -0.08 Total: -44.60 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.87 3.29 -68.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132651380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.026 kcal (2) G-P(sol) polarization free energy of solvation -71.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds