Wall clock time and date at job start Tue Mar 31 2020 11:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31808 * 119.67638 * 2 1 4 4 C 1.31858 * 121.80310 * 179.97438 * 3 2 1 5 5 C 1.38275 * 120.93203 * 359.97438 * 4 3 2 6 6 C 1.38489 * 119.24466 * 0.24988 * 5 4 3 7 7 C 1.38910 * 119.66940 * 179.97438 * 2 1 3 8 8 N 1.39753 * 120.49538 * 0.02568 * 7 2 1 9 9 C 1.34779 * 119.99897 * 202.38245 * 8 7 2 10 10 O 1.21372 * 120.00168 * 5.67890 * 9 8 7 11 11 C 1.49350 * 119.99773 * 185.68761 * 9 8 7 12 12 O 1.21360 * 120.00205 * 0.53301 * 11 9 8 13 13 N 1.34776 * 120.00298 * 180.53451 * 11 9 8 14 14 C 1.46499 * 119.99555 * 354.70003 * 13 11 9 15 15 C 1.50706 * 109.47139 * 83.24695 * 14 13 11 16 16 H 1.07998 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99893 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00047 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46908 * 90.00001 * 19 17 15 21 21 H 1.48493 * 109.47175 * 210.00040 * 19 17 15 22 22 H 1.48502 * 109.46917 * 330.00180 * 19 17 15 23 23 C 1.46496 * 120.00502 * 174.69706 * 13 11 9 24 24 C 1.53001 * 109.47106 * 94.87274 * 23 13 11 25 25 C 1.53001 * 117.50172 * 243.62511 * 24 23 13 26 26 C 1.52997 * 117.50036 * 175.00216 * 24 23 13 27 27 H 1.09004 * 109.46875 * 90.00857 * 1 2 3 28 28 H 1.08999 * 109.47491 * 210.00441 * 1 2 3 29 29 H 1.09001 * 109.47091 * 330.00631 * 1 2 3 30 30 H 1.08005 * 119.53312 * 180.02562 * 4 3 2 31 31 H 1.08007 * 120.37907 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.82412 * 179.74853 * 6 5 4 33 33 H 0.96999 * 119.99996 * 22.37996 * 8 7 2 34 34 H 1.08996 * 109.46887 * 203.24180 * 14 13 11 35 35 H 1.09001 * 109.47249 * 323.25090 * 14 13 11 36 36 H 0.97002 * 120.00074 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47334 * 214.87894 * 23 13 11 38 38 H 1.09004 * 109.46881 * 334.87825 * 23 13 11 39 39 H 1.08998 * 115.54885 * 29.33430 * 24 23 13 40 40 H 1.08998 * 117.49904 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.49844 * 145.02256 * 25 24 23 42 42 H 1.08998 * 117.50056 * 214.98409 * 26 24 23 43 43 H 1.09002 * 117.49839 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1452 0.0000 4 6 3.4772 1.1941 0.0005 5 6 4.2315 0.0352 0.0016 6 6 3.5878 -1.1910 -0.0031 7 6 2.1946 -1.2070 0.0005 8 7 1.4993 -2.4193 0.0005 9 6 2.1001 -3.5407 0.4455 10 8 3.2063 -3.4807 0.9414 11 6 1.4047 -4.8572 0.3282 12 8 0.3028 -4.9186 -0.1766 13 7 2.0009 -5.9772 0.7829 14 6 3.3759 -5.9225 1.2855 15 6 3.3676 -5.4713 2.7234 16 1 2.4317 -5.2472 3.2136 17 6 4.5548 -5.3445 3.4131 18 7 5.6943 -5.6179 2.8163 19 14 4.5445 -4.7845 5.1952 20 1 4.4411 -5.9686 6.0855 21 1 5.8013 -4.0511 5.4908 22 1 3.3827 -3.8888 5.4258 23 6 1.2741 -7.2491 0.7746 24 6 1.6127 -8.0217 -0.5019 25 6 0.4743 -8.2906 -1.4880 26 6 1.0423 -9.4341 -0.6451 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 3.9744 2.1530 0.0009 31 1 5.3104 0.0857 0.0016 32 1 4.1518 -2.1120 -0.0065 33 1 0.5843 -2.4536 -0.3196 34 1 3.8270 -6.9125 1.2181 35 1 3.9538 -5.2182 0.6871 36 1 6.5295 -5.5291 3.3016 37 1 1.5640 -7.8389 1.6441 38 1 0.2020 -7.0551 0.8082 39 1 2.6037 -7.8348 -0.9156 40 1 -0.5161 -7.9174 -1.2273 41 1 0.7161 -8.2805 -2.5508 42 1 1.6579 -10.1763 -1.1534 43 1 0.4254 -9.8128 0.1698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132689817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:03 Heat of formation + Delta-G solvation = 12.158103 kcal Electronic energy + Delta-G solvation = -26853.539133 eV Core-core repulsion = 23093.606285 eV Total energy + Delta-G solvation = -3759.932849 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93879 -39.71619 -38.16987 -36.97443 -35.56213 -34.33381 -32.85300 -32.44491 -30.67531 -28.12437 -27.55977 -26.77392 -24.49796 -23.12923 -22.43268 -22.14953 -21.73855 -20.41219 -19.40215 -17.83901 -16.91693 -16.71871 -16.31668 -16.03130 -15.82280 -15.27709 -15.05451 -14.51396 -14.44936 -14.28756 -14.03825 -13.71778 -13.42972 -13.17166 -12.87972 -12.43499 -12.37604 -12.26010 -12.08686 -11.90906 -11.59136 -11.45338 -11.34723 -10.98771 -10.90261 -10.78946 -10.51413 -10.30344 -10.04915 -9.77236 -9.65955 -9.56369 -9.35467 -8.69481 -8.34657 -8.04918 -7.90185 -6.08195 -4.10095 1.10959 1.43171 2.10626 2.74461 3.27291 3.34380 3.38170 3.69424 3.87432 3.99616 4.10108 4.39637 4.42286 4.80423 4.84041 4.96876 5.07055 5.13566 5.22123 5.24280 5.29239 5.44330 5.55276 5.58954 5.62825 5.63958 5.76630 5.92283 6.02941 6.04188 6.06939 6.14548 6.26933 6.38954 6.41224 6.42689 6.63696 6.93026 7.24073 7.30182 7.44226 7.80413 7.99864 8.07074 8.12346 8.23257 8.56711 8.89375 9.52755 11.00652 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.005329 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.214420 B = 5252.587158 C = 7449.719636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.090 3.910 3 N -0.467 5.467 4 C 0.069 3.931 5 C -0.152 4.152 6 C -0.090 4.090 7 C 0.116 3.884 8 N -0.653 5.653 9 C 0.487 3.513 10 O -0.425 6.425 11 C 0.509 3.491 12 O -0.556 6.556 13 N -0.555 5.555 14 C 0.229 3.771 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.071 3.929 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.146 3.854 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.178 4.178 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 3.921 -7.968 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.051 4.051 3 N -0.176 5.176 4 C -0.089 4.089 5 C -0.172 4.172 6 C -0.118 4.118 7 C 0.018 3.982 8 N -0.301 5.301 9 C 0.268 3.732 10 O -0.292 6.292 11 C 0.291 3.709 12 O -0.437 6.437 13 N -0.285 5.285 14 C 0.111 3.889 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.132 4.132 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.023 3.977 24 C -0.181 4.181 25 C -0.212 4.212 26 C -0.215 4.215 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.180 0.820 33 H 0.256 0.744 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.154 4.559 -7.796 11.522 hybrid contribution 0.396 -0.490 0.991 1.175 sum -6.758 4.069 -6.805 10.418 Atomic orbital electron populations 1.20659 0.88897 1.03639 1.02968 1.20969 0.96820 0.86869 1.00438 1.67415 1.10263 1.27750 1.12204 1.22577 0.89281 0.98439 0.98573 1.22071 1.01596 0.92661 1.00903 1.22054 0.92741 1.00479 0.96511 1.18633 0.92481 0.85982 1.01140 1.43249 1.17890 1.05630 1.63290 1.20519 0.87382 0.85449 0.79812 1.90943 1.17806 1.84972 1.35483 1.19662 0.85693 0.85312 0.80219 1.90656 1.20626 1.86846 1.45584 1.48214 1.17524 1.05723 1.57004 1.19945 0.74636 0.98805 0.95551 1.21175 0.92817 1.45737 0.95575 0.92851 1.24776 0.95273 0.95042 0.98075 1.69903 0.97531 1.48701 1.36728 0.86595 0.77561 0.78752 0.85079 1.20707 1.21116 1.20093 1.21047 0.96904 0.83725 0.95997 1.22735 0.98743 0.97806 0.98856 1.22979 0.98544 1.02761 0.96895 1.22913 1.04126 0.91411 1.03085 0.90435 0.90937 0.90097 0.82918 0.84553 0.82038 0.74419 0.94707 0.91916 0.92815 0.89406 0.90264 0.87575 0.88669 0.89382 0.88998 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.62 36.00 0.35 -0.82 16 2 C 0.09 1.31 6.80 -82.35 -0.56 0.75 16 3 N -0.47 -6.89 10.27 -9.30 -0.10 -6.99 16 4 C 0.07 0.92 11.18 -17.53 -0.20 0.72 16 5 C -0.15 -2.11 10.10 -39.48 -0.40 -2.51 16 6 C -0.09 -1.49 8.85 -39.08 -0.35 -1.84 16 7 C 0.12 1.86 6.46 -83.59 -0.54 1.32 16 8 N -0.65 -10.54 5.01 -10.20 -0.05 -10.59 16 9 C 0.49 9.53 7.55 -11.63 -0.09 9.44 16 10 O -0.42 -9.60 9.20 5.48 0.05 -9.55 16 11 C 0.51 10.14 7.67 -11.63 -0.09 10.05 16 12 O -0.56 -10.91 16.04 5.49 0.09 -10.83 16 13 N -0.56 -11.28 2.48 -175.61 -0.43 -11.71 16 14 C 0.23 5.46 4.79 -5.19 -0.02 5.43 16 15 C -0.51 -13.60 7.76 -34.44 -0.27 -13.87 16 16 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 17 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 18 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.15 2.51 5.68 -4.04 -0.02 2.49 16 24 C -0.16 -2.44 6.01 -90.62 -0.54 -2.99 16 25 C -0.17 -2.29 10.18 -26.73 -0.27 -2.56 16 26 C -0.18 -2.17 10.25 -26.73 -0.27 -2.44 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.77 6.93 -51.93 -0.36 0.41 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 31 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.16 2.99 5.75 -52.49 -0.30 2.69 16 33 H 0.42 5.81 6.80 -40.82 -0.28 5.53 16 34 H 0.03 0.86 8.02 -51.93 -0.42 0.44 16 35 H 0.06 1.61 5.86 -51.93 -0.30 1.31 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 38 H 0.08 1.32 7.09 -51.93 -0.37 0.96 16 39 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.09 1.25 8.03 -51.93 -0.42 0.84 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -30.49 363.16 -8.42 -38.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.79 Total: 8.19 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -3.37 Total: 5.03 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.15 Total: -53.68 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.14 Total: -20.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.49 -8.42 -38.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132689817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.073 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds