Wall clock time and date at job start Tue Mar 31 2020 11:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31808 * 119.67638 * 2 1 4 4 C 1.31858 * 121.80310 * 179.97438 * 3 2 1 5 5 C 1.38275 * 120.93203 * 359.97438 * 4 3 2 6 6 C 1.38489 * 119.24466 * 0.24988 * 5 4 3 7 7 C 1.38910 * 119.66940 * 179.97438 * 2 1 3 8 8 N 1.39753 * 120.49538 * 0.02568 * 7 2 1 9 9 C 1.34779 * 119.99897 * 202.38245 * 8 7 2 10 10 O 1.21372 * 120.00168 * 5.67890 * 9 8 7 11 11 C 1.49350 * 119.99773 * 185.68761 * 9 8 7 12 12 O 1.21360 * 120.00205 * 0.53301 * 11 9 8 13 13 N 1.34776 * 120.00298 * 180.53451 * 11 9 8 14 14 C 1.46499 * 119.99555 * 354.70003 * 13 11 9 15 15 C 1.50706 * 109.47139 * 83.24695 * 14 13 11 16 16 H 1.07998 * 119.99826 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99893 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00047 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99826 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46908 * 90.00001 * 19 17 15 21 21 H 1.48493 * 109.47175 * 210.00040 * 19 17 15 22 22 H 1.48502 * 109.46917 * 330.00180 * 19 17 15 23 23 C 1.46496 * 120.00502 * 174.69706 * 13 11 9 24 24 C 1.53001 * 109.47106 * 94.87274 * 23 13 11 25 25 C 1.53001 * 117.50172 * 243.62511 * 24 23 13 26 26 C 1.52997 * 117.50036 * 175.00216 * 24 23 13 27 27 H 1.09004 * 109.46875 * 90.00857 * 1 2 3 28 28 H 1.08999 * 109.47491 * 210.00441 * 1 2 3 29 29 H 1.09001 * 109.47091 * 330.00631 * 1 2 3 30 30 H 1.08005 * 119.53312 * 180.02562 * 4 3 2 31 31 H 1.08007 * 120.37907 * 179.97438 * 5 4 3 32 32 H 1.07997 * 120.82412 * 179.74853 * 6 5 4 33 33 H 0.96999 * 119.99996 * 22.37996 * 8 7 2 34 34 H 1.08996 * 109.46887 * 203.24180 * 14 13 11 35 35 H 1.09001 * 109.47249 * 323.25090 * 14 13 11 36 36 H 0.97002 * 120.00074 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.47334 * 214.87894 * 23 13 11 38 38 H 1.09004 * 109.46881 * 334.87825 * 23 13 11 39 39 H 1.08998 * 115.54885 * 29.33430 * 24 23 13 40 40 H 1.08998 * 117.49904 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.49844 * 145.02256 * 25 24 23 42 42 H 1.08998 * 117.50056 * 214.98409 * 26 24 23 43 43 H 1.09002 * 117.49839 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1452 0.0000 4 6 3.4772 1.1941 0.0005 5 6 4.2315 0.0352 0.0016 6 6 3.5878 -1.1910 -0.0031 7 6 2.1946 -1.2070 0.0005 8 7 1.4993 -2.4193 0.0005 9 6 2.1001 -3.5407 0.4455 10 8 3.2063 -3.4807 0.9414 11 6 1.4047 -4.8572 0.3282 12 8 0.3028 -4.9186 -0.1766 13 7 2.0009 -5.9772 0.7829 14 6 3.3759 -5.9225 1.2855 15 6 3.3676 -5.4713 2.7234 16 1 2.4317 -5.2472 3.2136 17 6 4.5548 -5.3445 3.4131 18 7 5.6943 -5.6179 2.8163 19 14 4.5445 -4.7845 5.1952 20 1 4.4411 -5.9686 6.0855 21 1 5.8013 -4.0511 5.4908 22 1 3.3827 -3.8888 5.4258 23 6 1.2741 -7.2491 0.7746 24 6 1.6127 -8.0217 -0.5019 25 6 0.4743 -8.2906 -1.4880 26 6 1.0423 -9.4341 -0.6451 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 3.9744 2.1530 0.0009 31 1 5.3104 0.0857 0.0016 32 1 4.1518 -2.1120 -0.0065 33 1 0.5843 -2.4536 -0.3196 34 1 3.8270 -6.9125 1.2181 35 1 3.9538 -5.2182 0.6871 36 1 6.5295 -5.5291 3.3016 37 1 1.5640 -7.8389 1.6441 38 1 0.2020 -7.0551 0.8082 39 1 2.6037 -7.8348 -0.9156 40 1 -0.5161 -7.9174 -1.2273 41 1 0.7161 -8.2805 -2.5508 42 1 1.6579 -10.1763 -1.1534 43 1 0.4254 -9.8128 0.1698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132689817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:02 Heat of formation + Delta-G solvation = -5.872721 kcal Electronic energy + Delta-G solvation = -26854.321009 eV Core-core repulsion = 23093.606285 eV Total energy + Delta-G solvation = -3760.714724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32319 -41.07961 -39.59137 -38.28373 -37.01717 -35.85306 -34.42597 -33.95963 -31.89847 -29.78699 -28.81037 -28.26289 -25.93779 -24.92947 -23.74064 -23.17217 -22.92555 -21.69348 -20.83314 -19.28695 -18.62700 -18.40254 -17.71766 -17.36490 -17.04756 -16.82527 -16.60039 -16.09163 -15.75295 -15.71456 -15.23958 -15.03133 -14.69738 -14.57810 -14.30968 -14.14831 -13.69705 -13.40273 -13.36450 -13.21895 -13.02593 -12.89313 -12.71370 -12.60054 -12.39237 -12.32270 -12.13134 -11.89956 -11.76819 -11.32233 -10.87142 -10.81911 -10.60902 -10.48277 -10.04170 -9.66059 -9.21381 -8.15958 -6.23442 -0.12775 0.22651 0.63628 1.30473 1.35892 1.38215 1.46392 2.17857 2.36140 2.53117 2.81481 2.95027 3.18308 3.31619 3.42020 3.70305 3.81367 3.93648 4.01373 4.11665 4.13317 4.29012 4.35194 4.54915 4.60471 4.66854 4.73218 4.74841 4.81421 4.85286 4.95160 5.03265 5.12265 5.16883 5.24193 5.26487 5.29302 5.35683 5.50918 5.74174 5.77160 6.02072 6.09790 6.28376 6.70642 6.79943 6.94892 7.03100 7.42216 8.92250 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009384 B = 0.005329 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2983.214420 B = 5252.587158 C = 7449.719636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.093 3.907 3 N -0.479 5.479 4 C 0.078 3.922 5 C -0.154 4.154 6 C -0.111 4.111 7 C 0.091 3.909 8 N -0.635 5.635 9 C 0.486 3.514 10 O -0.463 6.463 11 C 0.507 3.493 12 O -0.552 6.552 13 N -0.560 5.560 14 C 0.250 3.750 15 C -0.516 4.516 16 H 0.043 0.957 17 C 0.025 3.975 18 N -0.919 5.919 19 Si 0.947 3.053 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.280 1.280 23 C 0.146 3.854 24 C -0.188 4.188 25 C -0.168 4.168 26 C -0.154 4.154 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.191 0.809 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.428 0.572 34 H 0.022 0.978 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 4.736 -8.106 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.047 4.047 3 N -0.189 5.189 4 C -0.079 4.079 5 C -0.174 4.174 6 C -0.139 4.139 7 C -0.007 4.007 8 N -0.283 5.283 9 C 0.268 3.732 10 O -0.334 6.334 11 C 0.289 3.711 12 O -0.433 6.433 13 N -0.290 5.290 14 C 0.130 3.870 15 C -0.554 4.554 16 H 0.061 0.939 17 C -0.174 4.174 18 N -0.559 5.559 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.205 1.205 23 C 0.024 3.976 24 C -0.208 4.208 25 C -0.205 4.205 26 C -0.192 4.192 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.208 0.792 31 H 0.176 0.824 32 H 0.153 0.847 33 H 0.268 0.732 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.552 5.381 -7.957 12.860 hybrid contribution 0.781 -0.651 0.955 1.395 sum -7.770 4.730 -7.002 11.479 Atomic orbital electron populations 1.20772 0.86550 1.04254 1.04537 1.21436 0.98398 0.86085 0.98800 1.67557 1.11012 1.27534 1.12772 1.23198 0.88937 0.99619 0.96169 1.22332 1.02892 0.91874 1.00329 1.22019 0.93328 1.00667 0.97885 1.18791 0.92491 0.86285 1.03125 1.43032 1.18108 1.05004 1.62203 1.20545 0.86973 0.86106 0.79620 1.90942 1.19239 1.85487 1.37689 1.19772 0.85745 0.85449 0.80104 1.90640 1.20314 1.86895 1.45436 1.48148 1.16564 1.07163 1.57087 1.19427 0.76300 0.97069 0.94190 1.21336 0.92312 1.45080 0.96697 0.93851 1.25453 0.95097 0.95342 1.01552 1.69999 0.97944 1.49917 1.38056 0.85739 0.77183 0.78557 0.81224 1.19390 1.20911 1.20532 1.21188 0.96696 0.82549 0.97199 1.22570 0.98849 1.00520 0.98823 1.23035 0.97523 1.02759 0.97143 1.23035 1.03081 0.90207 1.02853 0.88290 0.90607 0.89143 0.79219 0.82363 0.84730 0.73157 0.96031 0.94010 0.92782 0.89752 0.89668 0.89273 0.88591 0.88385 0.87439 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.62 71.24 0.69 -1.42 16 2 C 0.09 2.59 6.80 42.72 0.29 2.89 16 3 N -0.48 -13.15 10.27 -183.34 -1.88 -15.04 16 4 C 0.08 1.90 11.18 84.70 0.95 2.84 16 5 C -0.15 -4.16 10.10 22.34 0.23 -3.93 16 6 C -0.11 -3.77 8.85 22.59 0.20 -3.57 16 7 C 0.09 2.91 6.46 38.30 0.25 3.16 16 8 N -0.63 -20.69 5.01 -304.52 -1.53 -22.21 16 9 C 0.49 19.64 7.55 87.24 0.66 20.29 16 10 O -0.46 -21.99 9.20 -3.31 -0.03 -22.02 16 11 C 0.51 20.57 7.67 87.24 0.67 21.24 16 12 O -0.55 -21.46 16.04 -3.28 -0.05 -21.51 16 13 N -0.56 -23.39 2.48 -827.86 -2.05 -25.44 16 14 C 0.25 12.43 4.79 85.64 0.41 12.84 16 15 C -0.52 -27.98 7.76 25.60 0.20 -27.79 16 16 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 17 C 0.03 1.39 5.46 84.66 0.46 1.86 16 18 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 19 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 C 0.15 5.02 5.68 86.38 0.49 5.51 16 24 C -0.19 -5.63 6.01 -10.79 -0.06 -5.69 16 25 C -0.17 -4.12 10.18 30.59 0.31 -3.80 16 26 C -0.15 -3.46 10.25 30.59 0.31 -3.14 16 27 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.08 1.48 6.93 -2.39 -0.02 1.46 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.14 5.34 5.75 -2.91 -0.02 5.33 16 33 H 0.43 11.68 6.80 -92.71 -0.63 11.05 16 34 H 0.02 1.12 8.02 -2.39 -0.02 1.10 16 35 H 0.04 2.28 5.86 -2.39 -0.01 2.27 16 36 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 38 H 0.09 2.80 7.09 -2.38 -0.02 2.79 16 39 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.10 2.35 8.03 -2.39 -0.02 2.33 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.46 363.16 3.23 -63.23 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.41 Total: 28.09 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.04 Total: 21.28 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -5.17 Total: -115.55 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.08 Total: -43.53 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -66.46 3.23 -63.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132689817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -66.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds