Wall clock time and date at job start Tue Mar 31 2020 11:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 120.37721 * 2 1 4 4 N 1.31862 * 120.92880 * 180.02562 * 3 2 1 5 5 C 1.31811 * 121.80694 * 359.65817 * 4 3 2 6 6 C 1.38905 * 120.64965 * 0.63206 * 5 4 3 7 7 N 1.39758 * 120.49354 * 179.67859 * 6 5 4 8 8 C 1.34776 * 119.99728 * 214.82674 * 7 6 5 9 9 O 1.21366 * 120.00274 * 5.01628 * 8 7 6 10 10 C 1.49354 * 119.99340 * 185.01853 * 8 7 6 11 11 O 1.21357 * 120.00412 * 354.43372 * 10 8 7 12 12 N 1.34774 * 119.99849 * 174.43908 * 10 8 7 13 13 C 1.46507 * 119.99963 * 354.63208 * 12 10 8 14 14 C 1.50707 * 109.46517 * 84.86047 * 13 12 10 15 15 H 1.07996 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.37869 * 119.99836 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00288 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46700 * 90.00537 * 18 16 14 20 20 H 1.48504 * 109.47097 * 210.00172 * 18 16 14 21 21 H 1.48496 * 109.47026 * 330.00727 * 18 16 14 22 22 C 1.46499 * 120.00446 * 174.64239 * 12 10 8 23 23 C 1.53005 * 109.47241 * 94.54862 * 22 12 10 24 24 C 1.53006 * 117.50060 * 243.62324 * 23 22 12 25 25 C 1.53002 * 60.00054 * 252.51250 * 24 23 22 26 26 C 1.38487 * 120.38015 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47193 * 269.97227 * 1 2 3 28 28 H 1.09003 * 109.47122 * 29.97341 * 1 2 3 29 29 H 1.09006 * 109.47085 * 149.97594 * 1 2 3 30 30 H 1.08002 * 119.53566 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.67592 * 180.33199 * 5 4 3 32 32 H 0.96992 * 119.99364 * 34.55236 * 7 6 5 33 33 H 1.08999 * 109.47108 * 204.85765 * 13 12 10 34 34 H 1.08998 * 109.47262 * 324.86332 * 13 12 10 35 35 H 0.96998 * 120.00144 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47553 * 214.55098 * 22 12 10 37 37 H 1.09005 * 109.46832 * 334.55408 * 22 12 10 38 38 H 1.08995 * 115.55113 * 29.33541 * 23 22 12 39 39 H 1.09003 * 117.49503 * 0.02562 * 24 23 22 40 40 H 1.09000 * 117.49489 * 145.02216 * 24 23 22 41 41 H 1.08996 * 117.49635 * 252.50790 * 25 24 23 42 42 H 1.08998 * 117.49527 * 107.48664 * 25 24 23 43 43 H 1.07995 * 120.82702 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.1930 0.0000 4 7 3.5248 1.2057 -0.0005 5 6 4.2303 0.0923 0.0057 6 6 3.5999 -1.1454 -0.0002 7 7 4.3512 -2.3239 -0.0004 8 6 3.9081 -3.4054 -0.6717 9 8 2.9046 -3.3295 -1.3501 10 6 4.6521 -4.6972 -0.5807 11 8 5.7087 -4.7484 0.0141 12 7 4.1502 -5.8061 -1.1593 13 6 2.8213 -5.7735 -1.7754 14 6 2.9350 -5.2594 -3.1875 15 1 3.9004 -4.9849 -3.5861 16 6 1.8066 -5.1404 -3.9706 17 7 0.6309 -5.4752 -3.4853 18 14 1.9472 -4.5025 -5.7207 19 1 2.1673 -5.6424 -6.6468 20 1 0.6943 -3.7973 -6.0927 21 1 3.0917 -3.5609 -5.8138 22 6 4.9331 -7.0442 -1.1720 23 6 4.5306 -7.9145 0.0203 24 6 5.5984 -8.2015 1.0780 25 6 5.1538 -9.3084 0.1199 26 6 2.2073 -1.1947 -0.0005 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6648 2.1275 0.0004 31 1 5.3091 0.1429 0.0104 32 1 5.1933 -2.3622 0.4793 33 1 2.4017 -6.7794 -1.7876 34 1 2.1703 -5.1151 -1.2003 35 1 -0.1629 -5.3919 -4.0364 36 1 4.7415 -7.5859 -2.0983 37 1 5.9942 -6.8038 -1.1045 38 1 3.5022 -7.7975 0.3618 39 1 6.5875 -7.7698 0.9245 40 1 5.2724 -8.2730 2.1156 41 1 4.5354 -10.1082 0.5272 42 1 5.8505 -9.6053 -0.6640 43 1 1.6872 -2.1411 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132757721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:19 Heat of formation + Delta-G solvation = 6.335163 kcal Electronic energy + Delta-G solvation = -26703.266195 eV Core-core repulsion = 22943.080845 eV Total energy + Delta-G solvation = -3760.185350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82616 -39.72870 -38.16108 -36.95705 -35.52417 -34.27589 -33.47671 -32.42813 -30.21620 -28.05784 -27.27043 -26.83917 -24.50298 -23.23324 -22.69428 -22.16129 -21.46464 -20.38445 -19.37736 -17.57452 -16.88105 -16.81523 -16.59944 -16.09549 -16.04783 -15.21568 -15.00779 -14.46627 -14.31886 -14.23962 -13.97655 -13.51637 -13.33321 -13.13628 -12.89499 -12.64149 -12.50860 -12.36899 -12.07095 -11.85963 -11.58762 -11.44786 -11.34247 -10.99493 -10.87114 -10.73776 -10.46796 -10.29943 -10.04006 -9.76270 -9.65310 -9.56676 -9.19061 -8.72786 -8.37875 -8.15263 -7.92870 -6.06757 -4.08112 1.08650 1.38117 2.10135 2.76711 3.28365 3.35273 3.39628 3.70203 3.87741 3.96312 4.10472 4.42451 4.57175 4.81931 4.95205 4.98074 4.98748 5.13368 5.16573 5.17588 5.22827 5.30657 5.54550 5.62551 5.64017 5.76318 5.77130 5.93210 6.00786 6.04552 6.08001 6.17635 6.27329 6.32987 6.42462 6.44194 6.64233 6.88657 7.23962 7.28783 7.45171 7.82068 8.00877 8.02214 8.13640 8.25686 8.58637 8.90801 9.54524 11.02226 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.005106 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.787677 B = 5482.551836 C = 7498.264251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.114 4.114 3 C 0.070 3.930 4 N -0.465 5.465 5 C 0.064 3.936 6 C 0.117 3.883 7 N -0.660 5.660 8 C 0.486 3.514 9 O -0.425 6.425 10 C 0.509 3.491 11 O -0.556 6.556 12 N -0.556 5.556 13 C 0.232 3.768 14 C -0.511 4.511 15 H 0.054 0.946 16 C 0.070 3.930 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.147 3.853 23 C -0.162 4.162 24 C -0.175 4.175 25 C -0.178 4.178 26 C -0.080 4.080 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.418 0.582 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 3.717 9.377 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.116 4.116 3 C -0.088 4.088 4 N -0.172 5.172 5 C -0.096 4.096 6 C 0.020 3.980 7 N -0.310 5.310 8 C 0.267 3.733 9 O -0.291 6.291 10 C 0.291 3.709 11 O -0.437 6.437 12 N -0.286 5.286 13 C 0.113 3.887 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.201 1.201 22 C 0.024 3.976 23 C -0.181 4.181 24 C -0.212 4.212 25 C -0.215 4.215 26 C -0.108 4.108 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.255 0.745 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.869 4.412 9.072 10.804 hybrid contribution -0.098 -0.532 -0.915 1.063 sum 3.772 3.880 8.157 9.788 Atomic orbital electron populations 1.20744 0.90026 1.03604 1.02468 1.20835 0.97735 0.93330 0.99722 1.22538 0.89820 0.97388 0.99049 1.67585 1.08340 1.29968 1.11329 1.22535 1.00226 0.86206 1.00648 1.18785 0.91814 0.87026 1.00393 1.43212 1.25462 1.09854 1.52460 1.20521 0.86677 0.85271 0.80833 1.91041 1.22385 1.82653 1.33009 1.19689 0.85534 0.85046 0.80603 1.90655 1.23577 1.85837 1.43621 1.48206 1.20436 1.07924 1.51996 1.19880 0.76351 0.98549 0.93873 1.21159 0.93644 1.43618 0.96539 0.92822 1.24769 0.95063 0.95123 0.98250 1.69905 0.98197 1.48252 1.36701 0.86592 0.77587 0.78989 0.84795 1.20735 1.21146 1.20085 1.21040 0.95731 0.83947 0.96910 1.22737 0.98679 0.97419 0.99297 1.22980 0.99682 1.02901 0.95612 1.22913 1.03931 0.91873 1.02816 1.21581 0.92390 0.99595 0.97244 0.90945 0.91174 0.90647 0.82944 0.82682 0.74456 0.94721 0.92356 0.92865 0.89380 0.90291 0.87604 0.88668 0.89393 0.89004 0.88813 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.03 36.00 0.36 -0.87 16 2 C -0.11 -1.57 5.89 -104.51 -0.62 -2.18 16 3 C 0.07 0.92 10.85 -17.52 -0.19 0.73 16 4 N -0.46 -6.76 10.35 -13.07 -0.14 -6.90 16 5 C 0.06 0.90 11.13 -17.31 -0.19 0.71 16 6 C 0.12 1.83 6.26 -83.59 -0.52 1.30 16 7 N -0.66 -10.45 5.34 -10.20 -0.05 -10.50 16 8 C 0.49 9.52 7.44 -11.63 -0.09 9.43 16 9 O -0.42 -9.74 9.99 5.48 0.05 -9.68 16 10 C 0.51 10.19 7.68 -11.63 -0.09 10.10 16 11 O -0.56 -10.98 16.05 5.49 0.09 -10.89 16 12 N -0.56 -11.36 2.47 -175.60 -0.43 -11.80 16 13 C 0.23 5.56 4.77 -5.19 -0.02 5.53 16 14 C -0.51 -13.60 7.73 -34.44 -0.27 -13.87 16 15 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 16 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 17 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.15 2.54 5.68 -4.04 -0.02 2.51 16 23 C -0.16 -2.45 6.01 -90.61 -0.54 -3.00 16 24 C -0.17 -2.29 10.18 -26.73 -0.27 -2.57 16 25 C -0.18 -2.18 10.25 -26.73 -0.27 -2.45 16 26 C -0.08 -1.29 8.44 -39.08 -0.33 -1.62 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 30 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.42 5.60 8.30 -40.82 -0.34 5.26 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.06 1.51 5.93 -51.93 -0.31 1.20 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 37 H 0.08 1.33 7.10 -51.93 -0.37 0.96 16 38 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.15 2.59 6.65 -52.49 -0.35 2.24 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -30.81 367.44 -8.36 -39.17 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.96 Total: 7.38 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -3.17 Total: 5.59 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.11 Total: -53.70 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.14 Total: -20.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.81 -8.36 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132757721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.509 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds