Wall clock time and date at job start Tue Mar 31 2020 11:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 120.37721 * 2 1 4 4 N 1.31862 * 120.92880 * 180.02562 * 3 2 1 5 5 C 1.31811 * 121.80694 * 359.65817 * 4 3 2 6 6 C 1.38905 * 120.64965 * 0.63206 * 5 4 3 7 7 N 1.39758 * 120.49354 * 179.67859 * 6 5 4 8 8 C 1.34776 * 119.99728 * 214.82674 * 7 6 5 9 9 O 1.21366 * 120.00274 * 5.01628 * 8 7 6 10 10 C 1.49354 * 119.99340 * 185.01853 * 8 7 6 11 11 O 1.21357 * 120.00412 * 354.43372 * 10 8 7 12 12 N 1.34774 * 119.99849 * 174.43908 * 10 8 7 13 13 C 1.46507 * 119.99963 * 354.63208 * 12 10 8 14 14 C 1.50707 * 109.46517 * 84.86047 * 13 12 10 15 15 H 1.07996 * 119.99834 * 0.02562 * 14 13 12 16 16 C 1.37869 * 119.99836 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00288 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46700 * 90.00537 * 18 16 14 20 20 H 1.48504 * 109.47097 * 210.00172 * 18 16 14 21 21 H 1.48496 * 109.47026 * 330.00727 * 18 16 14 22 22 C 1.46499 * 120.00446 * 174.64239 * 12 10 8 23 23 C 1.53005 * 109.47241 * 94.54862 * 22 12 10 24 24 C 1.53006 * 117.50060 * 243.62324 * 23 22 12 25 25 C 1.53002 * 60.00054 * 252.51250 * 24 23 22 26 26 C 1.38487 * 120.38015 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.47193 * 269.97227 * 1 2 3 28 28 H 1.09003 * 109.47122 * 29.97341 * 1 2 3 29 29 H 1.09006 * 109.47085 * 149.97594 * 1 2 3 30 30 H 1.08002 * 119.53566 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.67592 * 180.33199 * 5 4 3 32 32 H 0.96992 * 119.99364 * 34.55236 * 7 6 5 33 33 H 1.08999 * 109.47108 * 204.85765 * 13 12 10 34 34 H 1.08998 * 109.47262 * 324.86332 * 13 12 10 35 35 H 0.96998 * 120.00144 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47553 * 214.55098 * 22 12 10 37 37 H 1.09005 * 109.46832 * 334.55408 * 22 12 10 38 38 H 1.08995 * 115.55113 * 29.33541 * 23 22 12 39 39 H 1.09003 * 117.49503 * 0.02562 * 24 23 22 40 40 H 1.09000 * 117.49489 * 145.02216 * 24 23 22 41 41 H 1.08996 * 117.49635 * 252.50790 * 25 24 23 42 42 H 1.08998 * 117.49527 * 107.48664 * 25 24 23 43 43 H 1.07995 * 120.82702 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2062 1.1930 0.0000 4 7 3.5248 1.2057 -0.0005 5 6 4.2303 0.0923 0.0057 6 6 3.5999 -1.1454 -0.0002 7 7 4.3512 -2.3239 -0.0004 8 6 3.9081 -3.4054 -0.6717 9 8 2.9046 -3.3295 -1.3501 10 6 4.6521 -4.6972 -0.5807 11 8 5.7087 -4.7484 0.0141 12 7 4.1502 -5.8061 -1.1593 13 6 2.8213 -5.7735 -1.7754 14 6 2.9350 -5.2594 -3.1875 15 1 3.9004 -4.9849 -3.5861 16 6 1.8066 -5.1404 -3.9706 17 7 0.6309 -5.4752 -3.4853 18 14 1.9472 -4.5025 -5.7207 19 1 2.1673 -5.6424 -6.6468 20 1 0.6943 -3.7973 -6.0927 21 1 3.0917 -3.5609 -5.8138 22 6 4.9331 -7.0442 -1.1720 23 6 4.5306 -7.9145 0.0203 24 6 5.5984 -8.2015 1.0780 25 6 5.1538 -9.3084 0.1199 26 6 2.2073 -1.1947 -0.0005 27 1 -0.3634 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6648 2.1275 0.0004 31 1 5.3091 0.1429 0.0104 32 1 5.1933 -2.3622 0.4793 33 1 2.4017 -6.7794 -1.7876 34 1 2.1703 -5.1151 -1.2003 35 1 -0.1629 -5.3919 -4.0364 36 1 4.7415 -7.5859 -2.0983 37 1 5.9942 -6.8038 -1.1045 38 1 3.5022 -7.7975 0.3618 39 1 6.5875 -7.7698 0.9245 40 1 5.2724 -8.2730 2.1156 41 1 4.5354 -10.1082 0.5272 42 1 5.8505 -9.6053 -0.6640 43 1 1.6872 -2.1411 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132757721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:19 Heat of formation + Delta-G solvation = -12.171075 kcal Electronic energy + Delta-G solvation = -26704.068686 eV Core-core repulsion = 22943.080845 eV Total energy + Delta-G solvation = -3760.987841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22001 -41.07584 -39.59328 -38.27696 -36.99965 -35.80837 -34.55245 -34.41726 -31.46664 -29.76866 -28.51627 -28.27624 -25.94408 -24.95448 -24.06502 -23.17947 -22.67578 -21.67781 -20.82602 -19.07931 -18.59643 -18.30696 -17.95884 -17.45342 -17.38446 -16.78116 -16.61443 -16.09978 -15.77799 -15.49981 -15.13542 -14.95640 -14.55209 -14.45991 -14.31377 -14.11335 -13.73955 -13.65497 -13.50020 -13.35339 -13.03812 -12.82837 -12.69940 -12.59998 -12.42513 -12.32489 -12.03629 -11.86523 -11.76903 -11.32265 -10.86577 -10.79925 -10.58938 -10.35128 -10.10942 -9.66861 -9.34374 -8.15683 -6.22664 -0.11880 0.19702 0.60259 1.32719 1.35849 1.38115 1.46518 2.17962 2.36605 2.53338 2.78888 2.94950 3.18557 3.34238 3.58025 3.81044 3.84077 3.84499 4.01019 4.03311 4.10885 4.11705 4.34598 4.49292 4.60220 4.71392 4.74833 4.79063 4.81208 4.84744 4.95899 5.03028 5.08455 5.17958 5.24814 5.28591 5.29484 5.36408 5.49673 5.74139 5.74979 6.02873 6.09941 6.28863 6.72431 6.80479 6.91071 7.04352 7.42695 8.92608 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.005106 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.787677 B = 5482.551836 C = 7498.264251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 C 0.077 3.923 4 N -0.476 5.476 5 C 0.070 3.930 6 C 0.096 3.904 7 N -0.641 5.641 8 C 0.486 3.514 9 O -0.467 6.467 10 C 0.507 3.493 11 O -0.552 6.552 12 N -0.561 5.561 13 C 0.254 3.746 14 C -0.513 4.513 15 H 0.043 0.957 16 C 0.024 3.976 17 N -0.920 5.920 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.146 3.854 23 C -0.188 4.188 24 C -0.167 4.167 25 C -0.154 4.154 26 C -0.101 4.101 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.189 0.811 31 H 0.182 0.818 32 H 0.430 0.570 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 4.645 9.690 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.080 4.080 4 N -0.184 5.184 5 C -0.089 4.089 6 C -0.001 4.001 7 N -0.291 5.291 8 C 0.268 3.732 9 O -0.336 6.336 10 C 0.289 3.711 11 O -0.433 6.433 12 N -0.291 5.291 13 C 0.133 3.867 14 C -0.552 4.552 15 H 0.061 0.939 16 C -0.175 4.175 17 N -0.560 5.560 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.206 1.206 22 C 0.024 3.976 23 C -0.207 4.207 24 C -0.204 4.204 25 C -0.192 4.192 26 C -0.129 4.129 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.206 0.794 31 H 0.199 0.801 32 H 0.270 0.730 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.851 5.345 9.417 11.865 hybrid contribution -0.365 -0.746 -0.922 1.241 sum 4.486 4.600 8.495 10.651 Atomic orbital electron populations 1.20793 0.88214 1.03770 1.03785 1.21133 0.99142 0.92712 0.98952 1.23109 0.89583 0.98374 0.96978 1.67697 1.09056 1.29836 1.11784 1.22893 1.01466 0.85293 0.99264 1.18942 0.91733 0.87289 1.02129 1.42987 1.25617 1.09172 1.51334 1.20531 0.86102 0.85890 0.80706 1.91029 1.24040 1.83290 1.35256 1.19806 0.85592 0.85182 0.80489 1.90641 1.23313 1.85888 1.43459 1.48145 1.19635 1.09328 1.51958 1.19357 0.77790 0.96832 0.92677 1.21317 0.93069 1.43063 0.97705 0.93903 1.25446 0.94897 0.95516 1.01630 1.69999 0.98687 1.49415 1.37912 0.85741 0.77207 0.78642 0.81121 1.19348 1.20890 1.20600 1.21178 0.95456 0.83002 0.97956 1.22569 0.98554 0.99861 0.99751 1.23035 0.98697 1.02848 0.95859 1.23037 1.03064 0.90741 1.02340 1.21590 0.93045 0.99638 0.98644 0.88995 0.88738 0.92668 0.79436 0.80096 0.73043 0.96008 0.94468 0.92812 0.89777 0.89762 0.89237 0.88644 0.88340 0.87401 0.87494 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 10.03 71.23 0.71 -1.56 16 2 C -0.12 -3.13 5.89 -19.80 -0.12 -3.24 16 3 C 0.08 1.85 10.85 84.70 0.92 2.77 16 4 N -0.48 -12.83 10.35 -195.27 -2.02 -14.86 16 5 C 0.07 1.87 11.13 84.86 0.94 2.82 16 6 C 0.10 2.98 6.26 38.30 0.24 3.22 16 7 N -0.64 -20.45 5.34 -304.52 -1.62 -22.07 16 8 C 0.49 19.67 7.44 87.24 0.65 20.31 16 9 O -0.47 -22.43 9.99 -3.30 -0.03 -22.47 16 10 C 0.51 20.67 7.68 87.24 0.67 21.34 16 11 O -0.55 -21.63 16.05 -3.27 -0.05 -21.68 16 12 N -0.56 -23.59 2.47 -827.82 -2.04 -25.64 16 13 C 0.25 12.67 4.77 85.63 0.41 13.08 16 14 C -0.51 -28.06 7.73 25.60 0.20 -27.87 16 15 H 0.04 2.39 7.81 -2.91 -0.02 2.37 16 16 C 0.02 1.36 5.46 84.65 0.46 1.83 16 17 N -0.92 -53.37 13.29 21.44 0.28 -53.08 16 18 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 22 C 0.15 5.09 5.68 86.38 0.49 5.58 16 23 C -0.19 -5.64 6.01 -10.79 -0.06 -5.71 16 24 C -0.17 -4.13 10.18 30.60 0.31 -3.82 16 25 C -0.15 -3.48 10.25 30.60 0.31 -3.16 16 26 C -0.10 -3.34 8.44 22.60 0.19 -3.15 16 27 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.09 1.51 8.09 -2.39 -0.02 1.50 16 29 H 0.05 1.39 8.09 -2.38 -0.02 1.37 16 30 H 0.19 3.09 8.06 -2.91 -0.02 3.06 16 31 H 0.18 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.43 11.29 8.30 -92.71 -0.77 10.52 16 33 H 0.02 1.14 8.03 -2.39 -0.02 1.12 16 34 H 0.04 2.04 5.93 -2.39 -0.01 2.03 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 37 H 0.08 2.81 7.10 -2.38 -0.02 2.79 16 38 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.10 2.36 8.03 -2.39 -0.02 2.34 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.12 4.60 6.65 -2.91 -0.02 4.58 16 Total: -1.00 -67.25 367.44 3.13 -64.12 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.27 Total: 26.47 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 6.33 Total: 22.43 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -5.41 Total: -115.65 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.09 Total: -44.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.25 3.13 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132757721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.950 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds