Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38268 * 119.97311 * 2 1 4 4 C 1.38263 * 120.11324 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.97371 * 179.97438 * 4 3 2 6 6 C 1.38149 * 120.05589 * 359.97438 * 4 3 2 7 7 C 1.38738 * 119.94075 * 0.02562 * 6 4 3 8 8 O 1.35898 * 120.04966 * 180.02562 * 7 6 4 9 9 C 1.42903 * 116.99623 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47009 * 179.97438 * 9 8 7 11 11 N 1.29951 * 126.28759 * 90.02965 * 10 9 8 12 12 O 1.21294 * 110.24935 * 179.97438 * 11 10 9 13 13 C 1.33638 * 109.81711 * 359.97438 * 12 11 10 14 14 C 1.50700 * 126.55377 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47031 * 269.97853 * 14 13 12 16 16 C 1.46504 * 120.00062 * 269.99579 * 15 14 13 17 17 C 1.36933 * 119.99793 * 90.00476 * 15 14 13 18 18 H 1.07999 * 120.00344 * 22.33716 * 17 15 14 19 19 C 1.38816 * 119.99951 * 202.34149 * 17 15 14 20 20 N 1.31628 * 119.99731 * 11.33856 * 19 17 15 21 21 Si 1.86796 * 120.00246 * 191.34624 * 19 17 15 22 22 H 1.48498 * 109.47065 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47204 * 119.99891 * 21 19 17 24 24 H 1.48502 * 109.47052 * 239.99663 * 21 19 17 25 25 N 1.31132 * 106.89633 * 359.77225 * 13 12 11 26 26 C 1.38149 * 119.97373 * 180.23037 * 2 1 3 27 27 H 1.09007 * 109.47094 * 90.00233 * 1 2 3 28 28 H 1.09002 * 109.47474 * 209.99783 * 1 2 3 29 29 H 1.08994 * 109.47296 * 330.00343 * 1 2 3 30 30 H 1.07997 * 119.94003 * 359.97207 * 3 2 1 31 31 H 1.08996 * 109.47489 * 269.97826 * 5 4 3 32 32 H 1.09004 * 109.47322 * 29.97813 * 5 4 3 33 33 H 1.09004 * 109.47282 * 149.97684 * 5 4 3 34 34 H 1.07996 * 120.03179 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.47257 * 299.99989 * 9 8 7 36 36 H 1.09005 * 109.47188 * 60.00331 * 9 8 7 37 37 H 1.09001 * 109.46686 * 29.98209 * 14 13 12 38 38 H 1.09001 * 109.47017 * 149.97691 * 14 13 12 39 39 H 1.08990 * 109.46661 * 94.21892 * 16 15 14 40 40 H 1.08995 * 109.47244 * 214.21813 * 16 15 14 41 41 H 1.09003 * 109.46903 * 334.22228 * 16 15 14 42 42 H 0.96995 * 119.99756 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.02687 * 0.02610 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2011 0.0005 5 6 4.3301 2.5084 -0.0001 6 6 4.2752 0.0071 0.0016 7 6 3.5844 -1.1961 0.0016 8 8 4.2657 -2.3719 0.0032 9 6 3.4891 -3.5715 0.0037 10 6 4.4089 -4.7653 0.0048 11 7 4.8775 -5.3742 1.0529 12 8 5.5888 -6.2981 0.7186 13 6 5.6429 -6.3689 -0.6148 14 6 6.4166 -7.3731 -1.4296 15 7 7.7611 -6.8550 -1.6945 16 6 8.0140 -6.0532 -2.8942 17 6 8.7815 -7.1204 -0.8207 18 1 8.7176 -7.9707 -0.1580 19 6 9.8981 -6.2964 -0.7866 20 7 9.8855 -5.1444 -1.4234 21 14 11.4185 -6.8223 0.1626 22 1 11.1787 -8.1487 0.7858 23 1 12.5747 -6.9124 -0.7650 24 1 11.7106 -5.8236 1.2221 25 7 4.8905 -5.4002 -1.0787 26 6 2.1972 -1.1967 -0.0048 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5137 30 1 1.6564 2.1322 -0.0005 31 1 4.5116 2.8227 -1.0278 32 1 3.7384 3.2668 0.5127 33 1 5.2825 2.3813 0.5146 34 1 5.3552 0.0102 0.0016 35 1 2.8597 -3.5966 0.8931 36 1 2.8610 -3.5982 -0.8869 37 1 6.4904 -8.3097 -0.8770 38 1 5.9020 -7.5482 -2.3744 39 1 7.9237 -4.9949 -2.6496 40 1 9.0197 -6.2565 -3.2618 41 1 7.2866 -6.3116 -3.6639 42 1 10.6656 -4.5685 -1.3993 43 1 1.6572 -2.1320 -0.0090 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154483290.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 55.123106 kcal Electronic energy + Delta-G solvation = -25613.158672 eV Core-core repulsion = 21855.088926 eV Total energy + Delta-G solvation = -3758.069746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.51222 -41.36886 -39.07063 -37.86767 -36.72243 -34.53218 -34.36079 -32.90962 -31.99903 -29.54813 -28.75566 -28.13083 -27.95562 -27.57492 -24.78282 -23.90895 -22.95612 -22.34092 -21.42720 -19.29885 -18.88087 -18.59478 -18.50795 -17.37724 -17.17399 -17.00624 -16.80697 -15.91538 -15.58279 -15.47368 -15.14725 -14.86572 -14.80807 -14.19453 -14.13474 -14.01193 -13.76401 -13.44462 -13.33880 -13.24371 -12.98851 -12.96282 -12.85067 -12.65112 -12.53939 -12.40690 -12.35329 -12.10896 -12.06176 -11.93148 -11.86041 -11.75007 -11.03623 -10.78592 -9.65597 -9.23738 -9.11060 -7.96456 -5.49035 0.11577 0.26883 0.38628 0.96132 1.45480 1.47159 1.57938 1.96990 2.17767 2.44673 2.66821 2.75866 2.98908 3.26066 3.57576 3.64312 3.80416 3.82655 3.93059 4.07587 4.25312 4.27399 4.34620 4.41421 4.53203 4.63760 4.65484 4.77119 4.78629 4.79677 4.83672 4.84545 4.90729 5.01498 5.08234 5.24977 5.25021 5.31044 5.49633 5.57939 5.60440 5.65498 5.80395 6.16859 6.28787 6.97388 7.15918 7.63938 8.06100 9.06158 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015803 B = 0.002928 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.351095 B = 9559.803903 C =10596.251153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.045 4.045 3 C -0.161 4.161 4 C -0.046 4.046 5 C -0.114 4.114 6 C -0.187 4.187 7 C 0.117 3.883 8 O -0.341 6.341 9 C 0.166 3.834 10 C 0.148 3.852 11 N -0.397 5.397 12 O 0.066 5.934 13 C 0.190 3.810 14 C 0.221 3.779 15 N -0.587 5.587 16 C 0.173 3.827 17 C -0.276 4.276 18 H 0.093 0.907 19 C -0.049 4.049 20 N -0.934 5.934 21 Si 0.975 3.025 22 H -0.254 1.254 23 H -0.286 1.286 24 H -0.300 1.300 25 N -0.505 5.505 26 C -0.223 4.223 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.152 0.848 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.123 0.877 39 H -0.008 1.008 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.250 0.750 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.110 9.006 1.180 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.045 4.045 3 C -0.179 4.179 4 C -0.046 4.046 5 C -0.170 4.170 6 C -0.206 4.206 7 C 0.072 3.928 8 O -0.254 6.254 9 C 0.090 3.910 10 C -0.125 4.125 11 N -0.110 5.110 12 O 0.010 5.990 13 C -0.034 4.034 14 C 0.090 3.910 15 N -0.307 5.307 16 C 0.029 3.971 17 C -0.405 4.405 18 H 0.111 0.889 19 C -0.245 4.245 20 N -0.579 5.579 21 Si 0.802 3.198 22 H -0.178 1.178 23 H -0.213 1.213 24 H -0.228 1.228 25 N -0.241 5.241 26 C -0.241 4.241 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.170 0.830 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.010 0.990 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.135 9.571 1.628 21.457 hybrid contribution 1.463 -0.036 0.491 1.544 sum -17.672 9.535 2.119 20.192 Atomic orbital electron populations 1.20884 0.88332 1.04127 1.03582 1.20114 0.97816 0.91775 0.94832 1.21190 0.92954 0.98786 1.04936 1.20012 0.94503 0.94561 0.95559 1.20876 1.00000 0.92672 1.03473 1.20490 1.00140 0.90413 1.09562 1.19233 0.91736 0.84660 0.97163 1.86097 1.37086 1.13054 1.89170 1.20692 0.88659 0.76242 1.05425 1.25659 1.01764 1.00606 0.84456 1.74475 1.09096 1.02358 1.25062 1.85249 1.49053 1.37968 1.26756 1.32156 0.91876 0.98251 0.81072 1.20516 0.82437 0.91183 0.96868 1.44576 1.03097 1.60190 1.22886 1.20685 0.97861 0.92759 0.85826 1.19840 0.96052 1.07730 1.16921 0.88921 1.26023 1.03019 0.95125 1.00337 1.70296 1.29785 1.10867 1.46914 0.85093 0.78998 0.78172 0.77538 1.17806 1.21278 1.22771 1.71831 1.14468 1.08290 1.29494 1.21323 0.91611 1.00634 1.10542 0.89750 0.90713 0.89649 0.82990 0.89910 0.89061 0.91659 0.86862 0.87227 0.86869 0.86667 0.85880 0.98971 0.94811 0.93801 0.94090 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.05 -0.87 5.88 -19.88 -0.12 -0.99 16 3 C -0.16 -3.01 9.35 22.28 0.21 -2.80 16 4 C -0.05 -1.04 5.88 -19.88 -0.12 -1.15 16 5 C -0.11 -1.83 10.01 71.23 0.71 -1.12 16 6 C -0.19 -5.53 9.64 22.37 0.22 -5.32 16 7 C 0.12 3.59 6.69 22.51 0.15 3.74 16 8 O -0.34 -12.58 10.12 -92.40 -0.94 -13.52 16 9 C 0.17 5.17 5.36 71.24 0.38 5.55 16 10 C 0.15 5.90 7.85 138.46 1.09 6.98 16 11 N -0.40 -16.84 12.16 -60.33 -0.73 -17.57 16 12 O 0.07 2.84 11.31 74.88 0.85 3.69 16 13 C 0.19 7.82 8.10 88.38 0.72 8.53 16 14 C 0.22 8.13 6.33 85.63 0.54 8.68 16 15 N -0.59 -27.98 2.91 -731.32 -2.13 -30.11 16 16 C 0.17 8.45 9.01 127.77 1.15 9.60 16 17 C -0.28 -14.35 9.67 84.04 0.81 -13.54 16 18 H 0.09 4.50 7.84 -2.91 -0.02 4.48 16 19 C -0.05 -2.69 5.13 84.86 0.44 -2.25 16 20 N -0.93 -55.59 10.59 21.65 0.23 -55.36 16 21 Si 0.97 44.34 29.57 68.60 2.03 46.37 16 22 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 N -0.51 -21.20 11.55 -303.21 -3.50 -24.70 16 26 C -0.22 -5.28 8.69 22.36 0.19 -5.08 16 27 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 29 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.06 1.10 8.09 -2.38 -0.02 1.09 16 34 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 35 H 0.11 2.78 7.67 -2.39 -0.02 2.76 16 36 H 0.11 2.93 7.65 -2.38 -0.02 2.91 16 37 H 0.12 3.57 8.03 -2.39 -0.02 3.55 16 38 H 0.12 3.73 7.86 -2.39 -0.02 3.71 16 39 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 40 H 0.03 1.74 7.19 -2.39 -0.02 1.73 16 41 H 0.04 1.77 7.84 -2.39 -0.02 1.75 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.14 2.77 6.30 -2.91 -0.02 2.75 16 Total: -1.00 -72.54 367.98 3.91 -68.63 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.02 Total: 12.33 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 7.09 Total: 10.24 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.13 Total: -127.74 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.09 Total: -9.83 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -72.54 3.91 -68.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154483290.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.757 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds