Wall clock time and date at job start Tue Mar 31 2020 11:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35913 * 117.00023 * 2 1 4 4 C 1.38552 * 119.99418 * 359.97438 * 3 2 1 5 5 C 1.39225 * 119.81491 * 179.97438 * 4 3 2 6 6 C 1.48435 * 120.08837 * 179.97438 * 5 4 3 7 7 N 1.30759 * 126.41326 * 0.02562 * 6 5 4 8 8 O 1.21293 * 110.09597 * 179.97438 * 7 6 5 9 9 C 1.33668 * 110.02851 * 0.02562 * 8 7 6 10 10 C 1.50694 * 126.43726 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47270 * 269.97428 * 10 9 8 12 12 C 1.46905 * 110.99746 * 293.95723 * 11 10 9 13 13 C 1.46899 * 111.00181 * 170.00043 * 11 10 9 14 14 C 1.50701 * 109.46970 * 189.99728 * 13 11 10 15 15 H 1.08002 * 120.00370 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99856 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00061 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00150 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47220 * 90.00058 * 18 16 14 20 20 H 1.48499 * 109.47358 * 210.00236 * 18 16 14 21 21 H 1.48503 * 109.47257 * 330.00264 * 18 16 14 22 22 N 1.30977 * 107.11792 * 0.02562 * 9 8 7 23 23 C 1.39363 * 119.82126 * 0.25627 * 5 4 3 24 24 C 1.38036 * 119.98530 * 359.51497 * 23 5 4 25 25 C 1.38248 * 120.17866 * 0.45829 * 24 23 5 26 26 C 1.50699 * 119.90435 * 179.76517 * 25 24 23 27 27 H 1.09008 * 109.47018 * 59.99571 * 1 2 3 28 28 H 1.08990 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46831 * 300.00284 * 1 2 3 30 30 H 1.07991 * 120.08996 * 359.95898 * 4 3 2 31 31 H 1.09000 * 109.47522 * 29.97457 * 10 9 8 32 32 H 1.09007 * 109.47342 * 149.97444 * 10 9 8 33 33 H 1.09000 * 109.47305 * 59.99687 * 12 11 10 34 34 H 1.08996 * 109.46956 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47316 * 299.99732 * 12 11 10 36 36 H 1.08996 * 109.46950 * 310.00179 * 13 11 10 37 37 H 1.09002 * 109.47094 * 70.00522 * 13 11 10 38 38 H 0.96995 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00812 * 179.71905 * 23 5 4 40 40 H 1.08000 * 119.90343 * 180.23134 * 24 23 5 41 41 H 1.08997 * 109.47963 * 270.03211 * 26 25 24 42 42 H 1.09000 * 109.46904 * 30.02844 * 26 25 24 43 43 H 1.09005 * 109.47212 * 150.02547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3729 -0.0005 5 6 1.9273 3.6114 0.0000 6 6 1.1247 4.8601 -0.0011 7 7 -0.1802 4.9440 -0.0022 8 8 -0.5230 6.1075 -0.0024 9 6 0.5523 6.9015 -0.0021 10 6 0.5522 8.4085 -0.0028 11 7 0.5536 8.8976 -1.3880 12 6 1.8078 8.5478 -2.0684 13 6 0.3154 10.3464 -1.4350 14 6 0.0797 10.7706 -2.8618 15 1 0.1040 10.0372 -3.6543 16 6 -0.1670 12.0949 -3.1554 17 7 -0.3732 12.4651 -4.4004 18 14 -0.2083 13.3635 -1.7848 19 1 1.1539 13.9195 -1.5837 20 1 -1.1408 14.4592 -2.1523 21 1 -0.6708 12.7203 -0.5287 22 7 1.6060 6.1236 -0.0022 23 6 3.3194 3.6757 -0.0043 24 6 4.0637 2.5132 0.0010 25 6 3.4319 1.2835 0.0010 26 6 4.2506 0.0182 0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2128 2.3180 -0.0016 31 1 -0.3384 8.7720 0.5099 32 1 1.4416 8.7722 0.5119 33 1 1.9248 7.4642 -2.0801 34 1 1.7821 8.9213 -3.0920 35 1 2.6468 8.9981 -1.5379 36 1 -0.5605 10.5902 -0.8339 37 1 1.1852 10.8706 -1.0392 38 1 -0.5471 13.3967 -4.6070 39 1 3.8159 4.6348 -0.0085 40 1 5.1425 2.5645 0.0014 41 1 4.4488 -0.2868 -1.0260 42 1 5.1948 0.1966 0.5160 43 1 3.7004 -0.7704 0.5150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156649354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:36 Heat of formation + Delta-G solvation = 66.930980 kcal Electronic energy + Delta-G solvation = -25447.194051 eV Core-core repulsion = 21689.636332 eV Total energy + Delta-G solvation = -3757.557718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.43288 -40.54649 -37.90309 -37.21673 -35.70585 -33.65544 -32.62609 -31.85725 -30.51266 -28.53550 -27.94868 -27.47788 -27.31815 -24.42344 -23.94925 -22.73375 -21.95069 -21.09382 -20.38894 -18.43014 -17.99543 -17.08245 -16.80735 -16.54421 -16.10651 -15.79061 -15.20952 -15.01066 -14.67911 -14.57560 -14.17324 -14.00561 -13.88438 -13.61293 -12.86332 -12.77324 -12.61768 -12.58370 -12.37862 -12.24260 -11.92738 -11.89337 -11.67867 -11.49243 -11.34266 -11.19696 -11.11403 -10.95755 -10.80444 -10.45903 -10.15394 -9.90054 -9.41194 -8.99090 -8.65188 -8.35730 -7.71098 -6.11726 -4.10772 0.50499 1.11962 1.37349 2.40169 2.90602 2.93084 3.23619 3.31297 3.32122 3.42660 3.52814 3.97370 4.35132 4.48796 4.51460 4.67945 4.74550 4.85332 4.89095 4.95907 5.11247 5.16997 5.20192 5.24208 5.32808 5.36940 5.40730 5.44317 5.53125 5.68618 5.84066 5.91628 5.97741 6.03777 6.14098 6.17999 6.25308 6.41336 6.57019 6.69685 6.82224 7.01797 7.39277 7.63327 7.77659 8.20348 8.53113 8.96227 9.47837 11.01131 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.002363 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.788292 B =11846.868491 C =12182.343430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.171 4.171 5 C 0.019 3.981 6 C 0.204 3.796 7 N -0.382 5.382 8 O 0.089 5.911 9 C 0.218 3.782 10 C 0.134 3.866 11 N -0.526 5.526 12 C 0.032 3.968 13 C 0.164 3.836 14 C -0.513 4.513 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.266 1.266 22 N -0.477 5.477 23 C -0.106 4.106 24 C -0.087 4.087 25 C -0.102 4.102 26 C -0.106 4.106 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.056 0.944 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.021 0.979 36 H 0.035 0.965 37 H -0.008 1.008 38 H 0.265 0.735 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -22.556 12.319 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.077 3.923 4 C -0.192 4.192 5 C 0.017 3.983 6 C -0.066 4.066 7 N -0.088 5.088 8 O 0.029 5.971 9 C -0.003 4.003 10 C 0.004 3.996 11 N -0.252 5.252 12 C -0.116 4.116 13 C 0.039 3.961 14 C -0.551 4.551 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.535 5.535 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.190 1.190 22 N -0.210 5.210 23 C -0.126 4.126 24 C -0.105 4.105 25 C -0.103 4.103 26 C -0.163 4.163 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.010 0.990 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.942 -23.579 11.953 27.095 hybrid contribution 0.149 1.582 0.939 1.846 sum 6.091 -21.997 12.891 26.214 Atomic orbital electron populations 1.23104 0.78145 1.04045 1.01755 1.86056 1.21482 1.26269 1.88815 1.18582 0.91650 0.83990 0.98070 1.21192 1.00616 0.90937 1.06413 1.17052 0.91954 0.87072 1.02236 1.23806 0.87674 0.93037 1.02065 1.74837 1.14938 0.97959 1.21063 1.85289 1.35824 1.11013 1.64953 1.28870 0.79794 0.98488 0.93116 1.20678 1.04240 0.79947 0.94717 1.62010 1.35107 1.18451 1.09604 1.22354 0.88839 0.99386 1.01005 1.20260 0.95450 0.80916 0.99479 1.20953 1.48726 0.94200 0.91268 0.90004 1.24887 0.94746 0.98210 0.95379 1.69883 1.48515 1.17343 1.17800 0.86860 0.78281 0.81679 0.82890 1.20260 1.21067 1.19050 1.72006 1.28722 0.99389 1.20909 1.21146 0.91907 0.99555 1.00030 1.20847 1.00141 0.90426 0.99075 1.19424 0.90529 0.96505 1.03886 1.20645 0.98792 0.94305 1.02532 0.92408 0.88023 0.92520 0.84558 0.87254 0.90455 0.93151 0.89595 0.96017 0.94723 0.99034 0.92508 0.84323 0.84489 0.91092 0.91422 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.13 9.53 -19.47 -0.19 -3.31 16 3 C 0.12 1.36 6.65 -39.27 -0.26 1.10 16 4 C -0.17 -2.09 8.68 -39.10 -0.34 -2.43 16 5 C 0.02 0.25 5.87 -104.91 -0.62 -0.36 16 6 C 0.20 3.21 7.80 -156.12 -1.22 1.99 16 7 N -0.38 -6.22 11.86 30.97 0.37 -5.86 16 8 O 0.09 1.46 11.29 18.04 0.20 1.67 16 9 C 0.22 3.47 7.11 -12.99 -0.09 3.38 16 10 C 0.13 2.08 5.59 -4.98 -0.03 2.05 16 11 N -0.53 -10.38 4.74 -245.82 -1.17 -11.54 16 12 C 0.03 0.61 9.18 60.07 0.55 1.17 16 13 C 0.16 3.69 3.79 -4.98 -0.02 3.67 16 14 C -0.51 -13.97 9.01 -34.44 -0.31 -14.28 16 15 H 0.08 2.46 7.37 -52.49 -0.39 2.07 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -26.78 13.96 55.43 0.77 -26.00 16 18 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 22 N -0.48 -7.66 10.55 -9.88 -0.10 -7.77 16 23 C -0.11 -1.25 9.70 -39.24 -0.38 -1.63 16 24 C -0.09 -0.83 9.68 -39.65 -0.38 -1.22 16 25 C -0.10 -1.02 5.90 -104.42 -0.62 -1.63 16 26 C -0.11 -0.79 9.78 36.01 0.35 -0.43 16 27 H 0.06 0.41 7.66 -51.92 -0.40 0.02 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.14 1.60 6.10 -52.49 -0.32 1.28 16 31 H 0.11 1.47 7.93 -51.93 -0.41 1.05 16 32 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 33 H 0.05 0.91 6.74 -51.93 -0.35 0.56 16 34 H 0.09 1.81 6.76 -51.93 -0.35 1.46 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.76 6.99 -51.93 -0.36 0.40 16 37 H -0.01 -0.18 7.55 -51.93 -0.39 -0.57 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.14 1.59 7.87 -52.49 -0.41 1.18 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 43 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.38 361.33 -7.67 -39.05 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.87 Total: -1.86 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.47 Total: -5.62 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.13 Total: -51.17 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: 0.02 Total: -1.65 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.38 -7.67 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156649354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.981 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds