Wall clock time and date at job start Tue Mar 31 2020 11:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35913 * 117.00023 * 2 1 4 4 C 1.38552 * 119.99418 * 359.97438 * 3 2 1 5 5 C 1.39225 * 119.81491 * 179.97438 * 4 3 2 6 6 C 1.48435 * 120.08837 * 179.97438 * 5 4 3 7 7 N 1.30759 * 126.41326 * 0.02562 * 6 5 4 8 8 O 1.21293 * 110.09597 * 179.97438 * 7 6 5 9 9 C 1.33668 * 110.02851 * 0.02562 * 8 7 6 10 10 C 1.50694 * 126.43726 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47270 * 269.97428 * 10 9 8 12 12 C 1.46905 * 110.99746 * 293.95723 * 11 10 9 13 13 C 1.46899 * 111.00181 * 170.00043 * 11 10 9 14 14 C 1.50701 * 109.46970 * 189.99728 * 13 11 10 15 15 H 1.08002 * 120.00370 * 0.02562 * 14 13 11 16 16 C 1.37877 * 119.99856 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00061 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00150 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47220 * 90.00058 * 18 16 14 20 20 H 1.48499 * 109.47358 * 210.00236 * 18 16 14 21 21 H 1.48503 * 109.47257 * 330.00264 * 18 16 14 22 22 N 1.30977 * 107.11792 * 0.02562 * 9 8 7 23 23 C 1.39363 * 119.82126 * 0.25627 * 5 4 3 24 24 C 1.38036 * 119.98530 * 359.51497 * 23 5 4 25 25 C 1.38248 * 120.17866 * 0.45829 * 24 23 5 26 26 C 1.50699 * 119.90435 * 179.76517 * 25 24 23 27 27 H 1.09008 * 109.47018 * 59.99571 * 1 2 3 28 28 H 1.08990 * 109.47144 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46831 * 300.00284 * 1 2 3 30 30 H 1.07991 * 120.08996 * 359.95898 * 4 3 2 31 31 H 1.09000 * 109.47522 * 29.97457 * 10 9 8 32 32 H 1.09007 * 109.47342 * 149.97444 * 10 9 8 33 33 H 1.09000 * 109.47305 * 59.99687 * 12 11 10 34 34 H 1.08996 * 109.46956 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47316 * 299.99732 * 12 11 10 36 36 H 1.08996 * 109.46950 * 310.00179 * 13 11 10 37 37 H 1.09002 * 109.47094 * 70.00522 * 13 11 10 38 38 H 0.96995 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.00812 * 179.71905 * 23 5 4 40 40 H 1.08000 * 119.90343 * 180.23134 * 24 23 5 41 41 H 1.08997 * 109.47963 * 270.03211 * 26 25 24 42 42 H 1.09000 * 109.46904 * 30.02844 * 26 25 24 43 43 H 1.09005 * 109.47212 * 150.02547 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2913 2.3729 -0.0005 5 6 1.9273 3.6114 0.0000 6 6 1.1247 4.8601 -0.0011 7 7 -0.1802 4.9440 -0.0022 8 8 -0.5230 6.1075 -0.0024 9 6 0.5523 6.9015 -0.0021 10 6 0.5522 8.4085 -0.0028 11 7 0.5536 8.8976 -1.3880 12 6 1.8078 8.5478 -2.0684 13 6 0.3154 10.3464 -1.4350 14 6 0.0797 10.7706 -2.8618 15 1 0.1040 10.0372 -3.6543 16 6 -0.1670 12.0949 -3.1554 17 7 -0.3732 12.4651 -4.4004 18 14 -0.2083 13.3635 -1.7848 19 1 1.1539 13.9195 -1.5837 20 1 -1.1408 14.4592 -2.1523 21 1 -0.6708 12.7203 -0.5287 22 7 1.6060 6.1236 -0.0022 23 6 3.3194 3.6757 -0.0043 24 6 4.0637 2.5132 0.0010 25 6 3.4319 1.2835 0.0010 26 6 4.2506 0.0182 0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2128 2.3180 -0.0016 31 1 -0.3384 8.7720 0.5099 32 1 1.4416 8.7722 0.5119 33 1 1.9248 7.4642 -2.0801 34 1 1.7821 8.9213 -3.0920 35 1 2.6468 8.9981 -1.5379 36 1 -0.5605 10.5902 -0.8339 37 1 1.1852 10.8706 -1.0392 38 1 -0.5471 13.3967 -4.6070 39 1 3.8159 4.6348 -0.0085 40 1 5.1425 2.5645 0.0014 41 1 4.4488 -0.2868 -1.0260 42 1 5.1948 0.1966 0.5160 43 1 3.7004 -0.7704 0.5150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156649354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:35 Heat of formation + Delta-G solvation = 45.257194 kcal Electronic energy + Delta-G solvation = -25448.133897 eV Core-core repulsion = 21689.636332 eV Total energy + Delta-G solvation = -3758.497564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.65519 -41.33870 -38.74292 -38.69746 -36.85948 -34.97382 -34.30317 -33.03816 -31.35292 -30.23550 -28.93280 -28.54570 -28.22475 -26.05541 -25.08863 -23.76753 -22.90022 -22.40953 -21.74799 -19.43386 -19.26925 -18.93024 -17.98861 -17.41823 -16.81893 -16.71404 -16.62834 -16.26441 -16.16225 -15.94655 -15.57698 -14.89196 -14.55902 -14.54075 -14.41300 -14.24277 -13.71754 -13.66972 -13.48322 -13.24861 -13.09458 -12.98357 -12.73236 -12.67850 -12.58154 -12.47168 -12.22025 -12.17058 -12.11645 -12.06988 -11.74366 -11.49954 -11.25612 -10.75406 -9.86795 -9.24939 -9.19847 -8.24241 -6.29190 -0.49076 0.18717 0.29350 1.29205 1.42011 1.44055 1.54277 1.70246 2.20042 2.36358 2.39486 2.64027 2.82310 3.08804 3.22056 3.62934 3.69758 3.94852 4.07319 4.11234 4.21018 4.28378 4.29031 4.34010 4.42327 4.48572 4.53280 4.61291 4.64740 4.67150 4.72312 4.80484 4.86214 4.89158 5.00360 5.12801 5.14876 5.25025 5.35573 5.40247 5.52453 5.65382 5.86779 6.12633 6.25156 6.54357 6.77498 6.98759 7.33957 8.92501 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.002363 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.788292 B =11846.868491 C =12182.343430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.319 6.319 3 C 0.114 3.886 4 C -0.179 4.179 5 C -0.012 4.012 6 C 0.204 3.796 7 N -0.396 5.396 8 O 0.079 5.921 9 C 0.216 3.784 10 C 0.138 3.862 11 N -0.547 5.547 12 C 0.043 3.957 13 C 0.173 3.827 14 C -0.520 4.520 15 H 0.033 0.967 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.235 1.235 22 N -0.483 5.483 23 C -0.111 4.111 24 C -0.080 4.080 25 C -0.101 4.101 26 C -0.105 4.105 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.139 0.861 40 H 0.170 0.830 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -23.361 14.935 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.200 4.200 5 C -0.014 4.014 6 C -0.066 4.066 7 N -0.105 5.105 8 O 0.022 5.978 9 C -0.005 4.005 10 C 0.009 3.991 11 N -0.273 5.273 12 C -0.105 4.105 13 C 0.047 3.953 14 C -0.558 4.558 15 H 0.051 0.949 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.158 1.158 22 N -0.217 5.217 23 C -0.131 4.131 24 C -0.098 4.098 25 C -0.102 4.102 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.156 0.844 40 H 0.188 0.812 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.225 -24.410 14.589 29.341 hybrid contribution -0.217 1.624 0.049 1.639 sum 7.008 -22.786 14.638 27.975 Atomic orbital electron populations 1.23322 0.76857 1.05789 1.01655 1.86052 1.22840 1.25678 1.88641 1.18781 0.92354 0.83961 0.98017 1.21209 1.00674 0.91127 1.06952 1.17247 0.92736 0.86642 1.04765 1.24245 0.87670 0.93701 1.00937 1.74825 1.15468 0.97974 1.22232 1.85264 1.36096 1.11165 1.65318 1.28985 0.79750 0.98704 0.93040 1.20803 1.06647 0.79390 0.92306 1.61774 1.35686 1.17063 1.12774 1.22181 0.89349 0.99578 0.99405 1.20035 0.96418 0.82618 0.96200 1.21229 1.48082 0.93508 0.92976 0.94879 1.25905 0.94282 1.00836 0.98169 1.70063 1.50477 1.17982 1.20695 0.85676 0.78609 0.78209 0.80213 1.19318 1.21377 1.15754 1.71999 1.28882 0.99649 1.21139 1.21269 0.91286 1.00494 1.00098 1.21190 1.01606 0.89407 0.97547 1.19858 0.90388 0.97817 1.02163 1.20713 0.99237 0.92803 1.03334 0.92750 0.85372 0.92416 0.84909 0.84769 0.88069 0.92622 0.92869 0.94470 0.93223 0.97680 0.92486 0.84358 0.81250 0.90243 0.89269 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -6.01 9.53 -92.57 -0.88 -6.89 16 3 C 0.11 2.43 6.65 22.47 0.15 2.58 16 4 C -0.18 -4.38 8.68 22.58 0.20 -4.19 16 5 C -0.01 -0.32 5.87 -20.05 -0.12 -0.44 16 6 C 0.20 6.42 7.80 137.30 1.07 7.49 16 7 N -0.40 -13.04 11.86 -59.13 -0.70 -13.74 16 8 O 0.08 2.58 11.29 74.61 0.84 3.42 16 9 C 0.22 6.66 7.11 88.35 0.63 7.29 16 10 C 0.14 3.93 5.59 85.55 0.48 4.41 16 11 N -0.55 -21.04 4.74 -931.64 -4.42 -25.46 16 12 C 0.04 1.63 9.18 127.69 1.17 2.81 16 13 C 0.17 7.49 3.79 85.56 0.32 7.81 16 14 C -0.52 -28.83 9.01 25.60 0.23 -28.60 16 15 H 0.03 2.10 7.37 -2.91 -0.02 2.08 16 16 C 0.01 0.29 5.47 84.65 0.46 0.75 16 17 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 18 Si 0.95 41.37 27.47 68.60 1.88 43.25 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 22 N -0.48 -15.19 10.55 -302.51 -3.19 -18.38 16 23 C -0.11 -2.50 9.70 22.49 0.22 -2.28 16 24 C -0.08 -1.35 9.68 22.22 0.22 -1.14 16 25 C -0.10 -1.80 5.90 -19.73 -0.12 -1.92 16 26 C -0.10 -1.25 9.78 71.24 0.70 -0.55 16 27 H 0.05 0.77 7.66 -2.38 -0.02 0.75 16 28 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 30 H 0.13 3.21 6.10 -2.92 -0.02 3.19 16 31 H 0.13 3.16 7.93 -2.39 -0.02 3.14 16 32 H 0.10 2.47 8.12 -2.38 -0.02 2.45 16 33 H 0.06 2.02 6.74 -2.39 -0.02 2.00 16 34 H 0.05 2.33 6.76 -2.39 -0.02 2.32 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 2.02 6.99 -2.39 -0.02 2.00 16 37 H 0.01 0.22 7.55 -2.39 -0.02 0.21 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.14 3.04 7.87 -2.91 -0.02 3.02 16 40 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 43 H 0.07 0.88 7.52 -2.38 -0.02 0.86 16 Total: -1.00 -70.31 361.33 1.53 -68.79 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.97 Total: 11.95 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.72 Total: -4.62 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -8.01 Total: -115.90 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.04 Total: -3.47 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Total: -70.31 1.53 -68.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156649354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.045 kcal (2) G-P(sol) polarization free energy of solvation -70.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds