Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00369 * 2 1 4 4 H 1.48501 * 109.47633 * 240.00221 * 3 2 1 5 5 H 1.48504 * 109.47025 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47285 * 120.00236 * 3 2 1 7 7 C 1.37879 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47213 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.46986 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54530 * 291.62628 * 12 11 10 14 14 O 1.42101 * 110.54333 * 68.37799 * 12 11 10 15 15 N 1.65599 * 104.44748 * 180.02562 * 12 11 10 16 16 C 1.46496 * 120.00146 * 65.00260 * 15 12 11 17 17 H 1.09001 * 109.54841 * 24.99890 * 16 15 12 18 18 C 1.53186 * 109.54230 * 264.82315 * 16 15 12 19 19 C 1.53093 * 109.16452 * 183.15230 * 18 16 15 20 20 O 1.42905 * 109.41476 * 57.60639 * 19 18 16 21 21 C 1.42907 * 114.09725 * 298.84384 * 20 19 18 22 22 H 1.08996 * 109.48207 * 301.17246 * 21 20 19 23 23 C 1.53004 * 109.47849 * 181.15204 * 21 20 19 24 24 C 1.52998 * 117.49915 * 128.74658 * 23 21 20 25 25 C 1.52998 * 117.49787 * 60.08852 * 23 21 20 26 26 C 1.53104 * 109.48623 * 61.11153 * 21 20 19 27 27 H 0.97002 * 119.99124 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46554 * 60.00704 * 9 7 2 29 29 H 1.08995 * 109.47565 * 300.00769 * 9 7 2 30 30 H 1.09004 * 109.46811 * 60.00336 * 10 9 7 31 31 H 1.09005 * 109.47229 * 300.00471 * 10 9 7 32 32 H 1.09003 * 109.46593 * 60.00151 * 11 10 9 33 33 H 1.08994 * 109.46870 * 300.00519 * 11 10 9 34 34 H 0.97001 * 120.00004 * 244.99733 * 15 12 11 35 35 H 1.09004 * 109.51920 * 303.05347 * 18 16 15 36 36 H 1.08999 * 109.52297 * 63.18221 * 18 16 15 37 37 H 1.08993 * 109.47921 * 177.59118 * 19 18 16 38 38 H 1.09003 * 109.47809 * 297.62051 * 19 18 16 39 39 H 1.08998 * 115.55019 * 274.41511 * 23 21 20 40 40 H 1.09009 * 117.50018 * 359.97438 * 24 23 21 41 41 H 1.08992 * 117.50441 * 145.01896 * 24 23 21 42 42 H 1.09001 * 117.49732 * 214.97660 * 25 23 21 43 43 H 1.08997 * 117.50234 * 359.97438 * 25 23 21 44 44 H 1.09004 * 109.59078 * 182.57496 * 26 21 20 45 45 H 1.08998 * 109.45414 * 62.38972 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 16 2.6587 -6.3659 -0.0004 13 8 3.3565 -6.4262 -1.2369 14 8 3.3545 -6.4264 1.2371 15 7 1.7083 -7.7220 -0.0019 16 6 0.8501 -8.0138 -1.1528 17 1 1.2609 -7.5389 -2.0437 18 6 -0.5601 -7.4764 -0.8897 19 6 -1.4689 -7.8545 -2.0622 20 8 -1.4688 -9.2743 -2.2247 21 6 -0.1846 -9.8277 -2.5197 22 1 0.2005 -9.3834 -3.4374 23 6 -0.3108 -11.3419 -2.6998 24 6 0.2871 -11.9547 -3.9678 25 6 -1.2319 -11.8466 -3.8123 26 6 0.7775 -9.5287 -1.3669 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6244 -2.5571 0.8895 30 1 2.8717 -3.6045 0.8895 31 1 2.8718 -3.6045 -0.8905 32 1 0.8537 -5.0445 -0.8915 33 1 0.8530 -5.0451 0.8885 34 1 1.7199 -8.3233 0.7592 35 1 -0.9507 -7.9132 0.0295 36 1 -0.5239 -6.3915 -0.7908 37 1 -2.4837 -7.5118 -1.8607 38 1 -1.1005 -7.3842 -2.9740 39 1 -0.2588 -11.9302 -1.7837 40 1 0.7700 -11.2791 -4.6740 41 1 0.7320 -12.9463 -3.8861 42 1 -1.7856 -12.7673 -3.6283 43 1 -1.7483 -11.1001 -4.4157 44 1 1.7692 -9.9102 -1.6102 45 1 0.4148 -10.0082 -0.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162642409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = -117.620443 kcal Electronic energy + Delta-G solvation = -24957.922860 eV Core-core repulsion = 21295.513592 eV Total energy + Delta-G solvation = -3662.409268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08974 -37.28098 -36.90053 -35.87417 -35.69185 -34.72013 -32.23826 -31.25112 -31.06413 -27.85608 -25.11341 -24.18714 -23.64715 -22.60825 -21.02441 -20.90043 -20.65239 -19.23642 -17.57741 -17.03263 -16.63607 -16.53524 -16.00185 -15.73342 -15.25935 -15.19681 -14.92898 -14.61840 -14.48943 -14.15571 -13.86030 -13.41398 -12.67482 -12.38044 -12.26431 -12.04658 -11.98931 -11.96034 -11.88133 -11.82085 -11.73409 -11.56388 -11.43605 -11.26581 -10.98038 -10.91502 -10.85030 -10.70668 -10.44886 -10.34962 -9.97881 -9.83025 -9.72688 -9.36604 -9.12345 -8.42652 -6.07914 -4.11035 0.41639 2.75773 3.12614 3.30639 3.34616 3.37768 3.78564 3.89176 4.16204 4.35854 4.39567 4.41279 4.47202 4.57033 4.68663 4.71233 4.75939 4.92326 5.00164 5.06251 5.10205 5.20140 5.24520 5.28607 5.32120 5.39424 5.48924 5.55812 5.58304 5.73961 5.75780 5.78766 5.85402 5.90632 6.03684 6.23013 6.40876 6.82536 6.85849 6.95884 7.53644 7.63638 7.89858 8.30280 8.94887 9.53753 11.03262 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.002758 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.957699 B =10149.814198 C =10999.031443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.598 3.402 13 O -0.962 6.962 14 O -0.963 6.963 15 N -1.118 6.118 16 C 0.146 3.854 17 H 0.095 0.905 18 C -0.185 4.185 19 C 0.063 3.937 20 O -0.374 6.374 21 C 0.122 3.878 22 H 0.063 0.937 23 C -0.150 4.150 24 C -0.175 4.175 25 C -0.166 4.166 26 C -0.147 4.147 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.055 0.945 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -23.720 -5.100 24.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.742 4.742 12 S 2.694 3.306 13 O -0.952 6.952 14 O -0.953 6.953 15 N -0.874 5.874 16 C 0.038 3.962 17 H 0.113 0.887 18 C -0.224 4.224 19 C -0.015 4.015 20 O -0.293 6.293 21 C 0.063 3.937 22 H 0.081 0.919 23 C -0.168 4.168 24 C -0.212 4.212 25 C -0.203 4.203 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.249 0.751 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.776 -23.614 -5.235 24.346 hybrid contribution -0.103 1.131 0.458 1.225 sum -2.878 -22.483 -4.777 23.165 Atomic orbital electron populations 1.69947 1.06087 1.26911 1.50486 1.25017 0.94897 0.99372 0.95067 0.86611 0.79574 0.82799 0.78776 1.20109 1.21236 1.20116 1.21213 0.93219 0.90897 1.51228 0.92428 1.19054 0.93500 0.90428 0.97702 1.21509 0.99395 0.91622 1.01996 1.30658 1.16353 1.16009 1.11175 1.05368 0.75667 0.75298 0.74252 1.93570 1.70189 1.85742 1.45717 1.93581 1.70790 1.85870 1.45069 1.55781 1.61742 1.42445 1.27442 1.20838 0.89915 0.96747 0.88665 0.88748 1.22949 0.95655 1.02925 1.00902 1.22578 1.00881 0.81228 0.96779 1.87963 1.29016 1.20816 1.91530 1.21581 0.83811 0.91835 0.96447 0.91932 1.22160 1.06514 0.93823 0.94308 1.23046 0.96592 1.02363 0.99161 1.22854 0.92663 1.02943 1.01811 1.22445 1.01017 0.94999 1.00173 0.92826 0.96139 0.96122 0.91545 0.91569 0.85505 0.85164 0.75137 0.89848 0.89606 0.88072 0.92665 0.87240 0.88525 0.88408 0.88743 0.88379 0.89775 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.65 16 10 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -9.07 5.31 37.16 0.20 -8.87 16 12 S 2.60 37.31 5.44 -107.50 -0.58 36.72 16 13 O -0.96 -16.59 17.39 -57.54 -1.00 -17.59 16 14 O -0.96 -16.74 18.08 -57.54 -1.04 -17.78 16 15 N -1.12 -11.60 5.37 -4.73 -0.03 -11.62 16 16 C 0.15 1.40 2.77 -67.75 -0.19 1.21 16 17 H 0.09 0.95 7.48 -51.93 -0.39 0.56 16 18 C -0.18 -1.64 5.70 -26.59 -0.15 -1.79 16 19 C 0.06 0.54 6.84 37.21 0.25 0.79 16 20 O -0.37 -3.65 10.32 -35.23 -0.36 -4.01 16 21 C 0.12 1.03 2.84 -26.68 -0.08 0.96 16 22 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 23 C -0.15 -1.12 5.39 -90.62 -0.49 -1.61 16 24 C -0.17 -1.12 10.18 -26.70 -0.27 -1.39 16 25 C -0.17 -1.16 10.16 -26.70 -0.27 -1.43 16 26 C -0.15 -1.22 4.94 -26.59 -0.13 -1.35 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.13 1.65 6.74 -51.92 -0.35 1.30 16 33 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.41 3.53 8.80 -34.47 -0.30 3.22 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.77 5.88 -51.93 -0.31 0.46 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.77 8.11 -51.93 -0.42 0.35 16 40 H 0.10 0.60 8.05 -51.92 -0.42 0.18 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -34.67 374.44 -11.10 -45.77 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.63 Total: 0.62 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -1.81 Total: -28.59 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.71 Total: -37.25 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -2.40 Total: -39.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 37.31 SS G_CDS: -0.58 Total: 36.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.67 -11.10 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162642409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.846 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds